Index: /issm/trunk-jpl/src/m/classes/clusters/pfe.m
===================================================================
--- /issm/trunk-jpl/src/m/classes/clusters/pfe.m	(revision 12368)
+++ /issm/trunk-jpl/src/m/classes/clusters/pfe.m	(revision 12369)
@@ -145,46 +145,39 @@
 			 end
 		 end %}}}
-		 function LaunchQueueJob(cluster,md,options)% {{{
-			 
+		 function LaunchQueueJob(cluster,modelname,dirname,filelist)% {{{
+
+			 %compress the files into one zip.
+			 compressstring=['tar -zcf ' dirname '.tar.gz ' modelname '.bin ' modelname '.queue '  modelname '.petsc '];
+			 for i=1:numel(filelist),
+				 compressstring = [compressstring ' ' filelist{i}];
+			 end
+			 if cluster.interactive,
+				 compressstring = [compressstring ' ' modelname '.errlog ' modelname '.outlog '];
+			 end
+			 system(compressstring);
+
+			 disp('uploading input file and queueing script');
+			 if cluster.interactive,
+				 directory=[cluster.executionpath '/Interactive' num2str(cluster.interactive)];
+			 else 
+				 directory=cluster.executionpath;
+			 end
+
+			 if ~cluster.bbftp,
+				 issmscpout(cluster.name,directory,cluster.login,cluster.port,{[dirname '.tar.gz']});
+			 else
+				 issmbbftpout(cluster.name,directory,cluster.login,cluster.port,cluster.numstreams,{[dirname '.tar.gz']});
+			 end
+
 			 %lauch command, to be executed via ssh
 			 if ~cluster.interactive, 
-				launchcommand=['cd ' cluster.executionpath ' && rm -rf ./' md.private.runtimename ' && mkdir ' md.private.runtimename ...
-			                ' && cd ' md.private.runtimename ' && mv ../' md.private.runtimename '.tar.gz ./ && tar -zxf ' md.private.runtimename '.tar.gz  && qsub ' md.miscellaneous.name '.queue '];
-			else
-				launchcommand=['cd ' cluster.executionpath '/Interactive' num2str(cluster.interactive) ' && tar -zxf ' md.private.runtimename '.tar.gz'];
-			end
-
-			if ~strcmpi(options.batch,'yes'),
-				
-				%compress the files into one zip.
-				compressstring=['tar -zcf ' md.private.runtimename '.tar.gz ' md.miscellaneous.name '.bin ' md.miscellaneous.name '.queue '  md.miscellaneous.name '.petsc '];
-				if md.qmu.isdakota,
-					compressstring=[compressstring md.miscellaneous.name '.qmu.in '];
-				end
-				if cluster.interactive,
-					compressstring=[compressstring md.miscellaneous.name '.run ' md.miscellaneous.name '.errlog ' md.miscellaneous.name '.outlog '];
-				end
-				system(compressstring);
-				
-				disp('uploading input file and queueing script');
-				if cluster.interactive,
-					directory=[cluster.executionpath '/Interactive' num2str(cluster.interactive)];
-				else 
-					directory=cluster.executionpath;
-				end
-				
-				if ~cluster.bbftp,
-					issmscpout(cluster.name,directory,cluster.login,cluster.port,{[md.private.runtimename '.tar.gz']});
-				else
-					issmbbftpout(cluster.name,directory,cluster.login,cluster.port,cluster.numstreams,{[md.private.runtimename '.tar.gz']});
-				end
-				
-				disp('launching solution sequence on remote cluster');
-				issmssh(cluster.name,cluster.login,cluster.port,launchcommand);
-
-			else
-				disp('batch mode requested: not launching job interactively');
-				disp('launch solution sequence on remote cluster by hand');
-			end
+				 launchcommand=['cd ' cluster.executionpath ' && rm -rf ./' dirname ' && mkdir ' dirname ...
+					 ' && cd ' dirname ' && mv ../' dirname '.tar.gz ./ && tar -zxf ' dirname '.tar.gz  && qsub ' modelname '.queue '];
+			 else
+				 launchcommand=['cd ' cluster.executionpath '/Interactive' num2str(cluster.interactive) ' && tar -zxf ' dirname '.tar.gz'];
+			 end
+
+			 disp('launching solution sequence on remote cluster');
+			 issmssh(cluster.name,cluster.login,cluster.port,launchcommand);
 		 end
 		 %}}}