Index: /issm/trunk-jpl/externalpackages/adic/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/adic/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/adic/install.sh	(revision 12156)
@@ -19,11 +19,11 @@
 cd build
 ../source/configure \
-	--with-rose=$ISSM_TIER/externalpackages/rose/install \
-	--with-openanalysis=$ISSM_TIER/externalpackages/openanalysis/openanalysis/x86_64-Linux \
-	--with-boost=$ISSM_TIER/externalpackages/boost/install \
-	--with-xerces=$ISSM_TIER/externalpackages/xerces/src \
-	--with-xaifbooster=$ISSM_TIER/externalpackages/xaifbooster/xaifBooster \
-	--with-colpack=$ISSM_TIER/externalpackages/colpack/install\
-	--prefix=$ISSM_TIER/externalpackages/adic/install 
+	--with-rose=$ISSM_DIR/externalpackages/rose/install \
+	--with-openanalysis=$ISSM_DIR/externalpackages/openanalysis/openanalysis/x86_64-Linux \
+	--with-boost=$ISSM_DIR/externalpackages/boost/install \
+	--with-xerces=$ISSM_DIR/externalpackages/xerces/src \
+	--with-xaifbooster=$ISSM_DIR/externalpackages/xaifbooster/xaifBooster \
+	--with-colpack=$ISSM_DIR/externalpackages/colpack/install\
+	--prefix=$ISSM_DIR/externalpackages/adic/install 
 if [ -z $1 ]; then
 	make
Index: /issm/trunk-jpl/externalpackages/adolc/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/adolc/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/adolc/install.sh	(revision 12156)
@@ -20,5 +20,5 @@
 
 ./configure \
-	--prefix=$ISSM_TIER/externalpackages/adolc/install \
+	--prefix=$ISSM_DIR/externalpackages/adolc/install \
 	--enable-sparse \
 	--enable-docexa \
Index: /issm/trunk-jpl/externalpackages/android/android-sdk/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/android/android-sdk/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/android/android-sdk/install.sh	(revision 12156)
@@ -42,5 +42,5 @@
 
 	#Once this is done, we need to install an emulator. Location will default to ~/.android/avd, 
-	#which we will move to $ISSM_TIER/externalpackages/android-emulators.  
+	#which we will move to $ISSM_DIR/externalpackages/android-emulators.  
 	#For now, it's called: Android-4.0.3
 
Index: /issm/trunk-jpl/externalpackages/autoconf/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/autoconf/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/autoconf/install.sh	(revision 12156)
@@ -15,5 +15,5 @@
 #Compile autoconf
 cd src 
-./configure --prefix="$ISSM_TIER/externalpackages/autoconf/install" 
+./configure --prefix="$ISSM_DIR/externalpackages/autoconf/install" 
 make  
 make install
Index: /issm/trunk-jpl/externalpackages/automake/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/automake/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/automake/install.sh	(revision 12156)
@@ -13,5 +13,5 @@
 #Compile automake
 cd src 
-./configure --prefix="$ISSM_TIER/externalpackages/automake/install" 
+./configure --prefix="$ISSM_DIR/externalpackages/automake/install" 
 make  
 make install
Index: /issm/trunk-jpl/externalpackages/bbftp/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/bbftp/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/bbftp/install.sh	(revision 12156)
@@ -19,5 +19,5 @@
 #Configure and compile
 cd bbftpc
-./configure --prefix=$ISSM_TIER/externalpackages/bbftp/install
+./configure --prefix=$ISSM_DIR/externalpackages/bbftp/install
 make
 make install
Index: /issm/trunk-jpl/externalpackages/boost/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/boost/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/boost/install.sh	(revision 12156)
@@ -22,7 +22,7 @@
 cd src 
 ./bootstrap.sh \
-	--prefix="$ISSM_TIER/externalpackages/boost/install" \
+	--prefix="$ISSM_DIR/externalpackages/boost/install" \
 	--with-python=python3.2 \
-	--with-python-root="$ISSM_TIER/externalpackages/python/install" 
+	--with-python-root="$ISSM_DIR/externalpackages/python/install" 
 
 #Compile boost
Index: /issm/trunk-jpl/externalpackages/bsdtar/install-win7.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/bsdtar/install-win7.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/bsdtar/install-win7.sh	(revision 12156)
@@ -13,5 +13,5 @@
 
 cd src 
-./configure --prefix="$ISSM_TIER/externalpackages/bsdtar/install" 
+./configure --prefix="$ISSM_DIR/externalpackages/bsdtar/install" 
 make
 make install
Index: /issm/trunk-jpl/externalpackages/cccl/install-win7.orig.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/cccl/install-win7.orig.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/cccl/install-win7.orig.sh	(revision 12156)
@@ -15,5 +15,5 @@
 
 #Compile
-./configure --prefix="$ISSM_TIER/externalpackages/cccl/install"
+./configure --prefix="$ISSM_DIR/externalpackages/cccl/install"
 
 make
Index: /issm/trunk-jpl/externalpackages/cmake/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/cmake/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/cmake/install.sh	(revision 12156)
@@ -14,5 +14,5 @@
 #Compile cmake
 cd install 
-./bootstrap --prefix=$ISSM_TIER/externalpackages/cmake/install
+./bootstrap --prefix=$ISSM_DIR/externalpackages/cmake/install
 if [ -z $1 ]; then
 	make
Index: /issm/trunk-jpl/externalpackages/cppcheck/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/cppcheck/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/cppcheck/install.sh	(revision 12156)
@@ -17,4 +17,4 @@
 	make -j $1
 fi  
-make install PREFIX=$ISSM_TIER/externalpackages/cppcheck/install
+make install PREFIX=$ISSM_DIR/externalpackages/cppcheck/install
 cd ..
Index: /issm/trunk-jpl/externalpackages/dakota/install-altix64-cosmos.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/dakota/install-altix64-cosmos.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/dakota/install-altix64-cosmos.sh	(revision 12156)
@@ -29,5 +29,5 @@
 cd src
 ./configure \ 
-	--prefix="$ISSM_TIER/externalpackages/dakota/install" \
+	--prefix="$ISSM_DIR/externalpackages/dakota/install" \
 	--without-graphics  \
 	--with-pic \
Index: /issm/trunk-jpl/externalpackages/dakota/install-linux64-astrid.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/dakota/install-linux64-astrid.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/dakota/install-linux64-astrid.sh	(revision 12156)
@@ -29,5 +29,5 @@
 cd src
 ./configure \
-	--prefix="$ISSM_TIER/externalpackages/dakota/install" \
+	--prefix="$ISSM_DIR/externalpackages/dakota/install" \
 	--without-graphics  \
 	--with-pic \
Index: /issm/trunk-jpl/externalpackages/dakota/install-linux64-murdo.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/dakota/install-linux64-murdo.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/dakota/install-linux64-murdo.sh	(revision 12156)
@@ -29,5 +29,5 @@
 cd src
 ./configure \
-	--prefix="$ISSM_TIER/externalpackages/dakota/install" \
+	--prefix="$ISSM_DIR/externalpackages/dakota/install" \
 	--without-graphics  \
 	--with-pic \
Index: /issm/trunk-jpl/externalpackages/dakota/install-macosx64.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/dakota/install-macosx64.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/dakota/install-macosx64.sh	(revision 12156)
@@ -29,10 +29,10 @@
 cd src
 ./configure \
-   --prefix="$ISSM_TIER/externalpackages/dakota/install" \
+   --prefix="$ISSM_DIR/externalpackages/dakota/install" \
    --without-graphics  \
    --with-pic \
    --disable-mpi \
-   --with-blas="-L$ISSM_TIER/externalpackages/petsc/install/lib -lfblas " \
-   --with-lapack="-L$ISSM_TIER/externalpackages/petsc/install/lib -lflapack -lPLAPACK "
+   --with-blas="-L$ISSM_DIR/externalpackages/petsc/install/lib -lfblas " \
+   --with-lapack="-L$ISSM_DIR/externalpackages/petsc/install/lib -lflapack -lPLAPACK "
 cd ..
 
Index: /issm/trunk-jpl/externalpackages/dakota/install-pleiades.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/dakota/install-pleiades.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/dakota/install-pleiades.sh	(revision 12156)
@@ -29,5 +29,5 @@
 cd src
 ./configure \ 
-	--prefix="$ISSM_TIER/externalpackages/dakota/install" \
+	--prefix="$ISSM_DIR/externalpackages/dakota/install" \
 	--without-graphics  \
 	--with-pic \
Index: /issm/trunk-jpl/externalpackages/doxygen/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/doxygen/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/doxygen/install.sh	(revision 12156)
@@ -8,5 +8,5 @@
 
 #Configure doxygen
-cd install && ./configure --prefix "$ISSM_TIER/externalpackages/doxygen/install"
+cd install && ./configure --prefix "$ISSM_DIR/externalpackages/doxygen/install"
 if [ -z $1 ]; then
 	make
Index: /issm/trunk-jpl/externalpackages/gdal/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/gdal/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/gdal/install.sh	(revision 12156)
@@ -17,5 +17,5 @@
 cd src
 ./configure \
-	--prefix="$ISSM_TIER/externalpackages/gdal/install" \
+	--prefix="$ISSM_DIR/externalpackages/gdal/install" \
 	--without-python \
 	--with-netcdf=no \
Index: /issm/trunk-jpl/externalpackages/gmake/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/gmake/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/gmake/install.sh	(revision 12156)
@@ -16,5 +16,5 @@
 
 #Configure and compile: 
-./configure --prefix=$ISSM_TIER/externalpackages/gmake/install
+./configure --prefix=$ISSM_DIR/externalpackages/gmake/install
 
 if [ -z $1 ]; then
Index: /issm/trunk-jpl/externalpackages/graphviz/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/graphviz/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/graphviz/install.sh	(revision 12156)
@@ -14,5 +14,5 @@
 #Configure dakota
 cd src
-./configure --prefix="$ISSM_TIER/externalpackages/graphviz/install"
+./configure --prefix="$ISSM_DIR/externalpackages/graphviz/install"
 cd ..
 
Index: /issm/trunk-jpl/externalpackages/gsl/install-android-4.0.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/gsl/install-android-4.0.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/gsl/install-android-4.0.sh	(revision 12156)
@@ -24,5 +24,5 @@
     LIB_EXT=a\
     --host="arm-linux"\
-	--prefix="$ISSM_TIER/externalpackages/gsl/install" 
+	--prefix="$ISSM_DIR/externalpackages/gsl/install" 
 
 #Compile gsl
Index: /issm/trunk-jpl/externalpackages/gsl/install-linux64-murdo.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/gsl/install-linux64-murdo.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/gsl/install-linux64-murdo.sh	(revision 12156)
@@ -16,5 +16,5 @@
 
 ./configure \
-	--prefix="$ISSM_TIER/externalpackages/gsl/install" 
+	--prefix="$ISSM_DIR/externalpackages/gsl/install" 
 
 #Compile gsl
Index: /issm/trunk-jpl/externalpackages/gsl/install-macosx64.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/gsl/install-macosx64.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/gsl/install-macosx64.sh	(revision 12156)
@@ -18,5 +18,5 @@
 
 ./configure \
-	--prefix="$ISSM_TIER/externalpackages/gsl/install" 
+	--prefix="$ISSM_DIR/externalpackages/gsl/install" 
 
 #Compile gsl
Index: /issm/trunk-jpl/externalpackages/latex2rtf/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/latex2rtf/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/latex2rtf/install.sh	(revision 12156)
@@ -10,4 +10,4 @@
 #Compile
 cd install
-export PREFIX="$ISSM_TIER/externalpackages/latex2rtf/install/"
+export PREFIX="$ISSM_DIR/externalpackages/latex2rtf/install/"
 make
Index: /issm/trunk-jpl/externalpackages/libtool/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/libtool/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/libtool/install.sh	(revision 12156)
@@ -13,5 +13,5 @@
 #Compile libtool
 cd src 
-./configure --prefix="$ISSM_TIER/externalpackages/libtool/install" 
+./configure --prefix="$ISSM_DIR/externalpackages/libtool/install" 
 make  
 make install
Index: /issm/trunk-jpl/externalpackages/metis/install-5.0.1-linux64.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/metis/install-5.0.1-linux64.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/metis/install-5.0.1-linux64.sh	(revision 12156)
@@ -17,4 +17,4 @@
 
 #Compile metis
-make config prefix="$ISSM_TIER/externalpackages/metis/install"
+make config prefix="$ISSM_DIR/externalpackages/metis/install"
 make install
Index: /issm/trunk-jpl/externalpackages/mpich2/install-1.0.2-altix64.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/mpich2/install-1.0.2-altix64.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/mpich2/install-1.0.2-altix64.sh	(revision 12156)
@@ -18,5 +18,5 @@
 export FFLAGS="$FFLAGS -fPIC"
 ./configure \
-	--prefix="$ISSM_TIER/externalpackages/mpich2/install" \
+	--prefix="$ISSM_DIR/externalpackages/mpich2/install" \
 	--enable-sharedlibs=gcc \
 	--enable-f91=gfortran 
Index: /issm/trunk-jpl/externalpackages/mpich2/install-1.0.2-linux64.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/mpich2/install-1.0.2-linux64.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/mpich2/install-1.0.2-linux64.sh	(revision 12156)
@@ -18,5 +18,5 @@
 export FFLAGS="$FFLAGS -fPIC"
 ./configure \
-	--prefix="$ISSM_TIER/externalpackages/mpich2/install" \
+	--prefix="$ISSM_DIR/externalpackages/mpich2/install" \
 	--enable-sharedlibs=gcc \
 	--enable-f91=gfortran 
Index: /issm/trunk-jpl/externalpackages/mpich2/install-1.0.2-macosx32.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/mpich2/install-1.0.2-macosx32.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/mpich2/install-1.0.2-macosx32.sh	(revision 12156)
@@ -17,5 +17,5 @@
 export CFLAGS=" -m32"
 ./configure \
-	--prefix="$ISSM_TIER/externalpackages/mpich2/install" \
+	--prefix="$ISSM_DIR/externalpackages/mpich2/install" \
 	--enable-f91=gfortran \
 	--enable-sharedlibs=osx-gcc
Index: /issm/trunk-jpl/externalpackages/mpich2/install-1.0.2-win32.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/mpich2/install-1.0.2-win32.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/mpich2/install-1.0.2-win32.sh	(revision 12156)
@@ -17,5 +17,5 @@
 export CFLAGS="$CFLAGS -fPIC"
 export FFLAGS="$FFLAGS -fPIC"
-./configure --prefix="$ISSM_TIER/externalpackages/mpich2/install" 
+./configure --prefix="$ISSM_DIR/externalpackages/mpich2/install" 
 
 #Apply Patch to examples
Index: /issm/trunk-jpl/externalpackages/mpich2/install-1.4-linux64.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/mpich2/install-1.4-linux64.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/mpich2/install-1.4-linux64.sh	(revision 12156)
@@ -17,5 +17,5 @@
 export FFLAGS="$FFLAGS -fPIC"
 ./configure \
-	--prefix="$ISSM_TIER/externalpackages/mpich2/install" \
+	--prefix="$ISSM_DIR/externalpackages/mpich2/install" \
 	--enable-shared \
 	--enable-sharedlibs=gcc \
Index: /issm/trunk-jpl/externalpackages/mpich2/install-1.4-macosx32.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/mpich2/install-1.4-macosx32.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/mpich2/install-1.4-macosx32.sh	(revision 12156)
@@ -19,5 +19,5 @@
 export CPPFLAGS=" -arch i386"
 ./configure \
-	--prefix="$ISSM_TIER/externalpackages/mpich2/install" \
+	--prefix="$ISSM_DIR/externalpackages/mpich2/install" \
 	--enable-f91=gfortran \
 	--enable-sharedlibs=osx-gcc \
Index: /issm/trunk-jpl/externalpackages/mpich2/install-1.4-macosx64.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/mpich2/install-1.4-macosx64.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/mpich2/install-1.4-macosx64.sh	(revision 12156)
@@ -19,5 +19,5 @@
 export CXXFLAGS=" -arch x86_64"
 ./configure \
-	--prefix="$ISSM_TIER/externalpackages/mpich2/install" \
+	--prefix="$ISSM_DIR/externalpackages/mpich2/install" \
 	--enable-f91 \
 	--enable-sharedlibs=osx-gcc \
Index: /issm/trunk-jpl/externalpackages/ncview/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/ncview/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/ncview/install.sh	(revision 12156)
@@ -15,9 +15,9 @@
 cd install
 ./configure \
-	--prefix "$ISSM_TIER/externalpackages/ncview/install" \
+	--prefix "$ISSM_DIR/externalpackages/ncview/install" \
 	--x-libraries=/usr/X11/lib/ \
 	--x-includes=/usr/X11/include/ \
-	--with-netcdf_incdir="$ISSM_TIER/externalpackages/netcdf/install/include/" \
-	--with-netcdf_libdir="$ISSM_TIER/externalpackages/netcdf/install/lib/"
+	--with-netcdf_incdir="$ISSM_DIR/externalpackages/netcdf/install/include/" \
+	--with-netcdf_libdir="$ISSM_DIR/externalpackages/netcdf/install/lib/"
 
 make
Index: /issm/trunk-jpl/externalpackages/netcdf/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/netcdf/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/netcdf/install.sh	(revision 12156)
@@ -15,5 +15,5 @@
 #Configure and compile
 cd install
-./configure  --prefix="$ISSM_TIER/externalpackages/netcdf/install" 
+./configure  --prefix="$ISSM_DIR/externalpackages/netcdf/install" 
 if [ -z $1 ]; then
 	make
Index: /issm/trunk-jpl/externalpackages/pcre/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/pcre/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/pcre/install.sh	(revision 12156)
@@ -13,5 +13,5 @@
 #Configure doxygen
 cd install 
-./configure --prefix "$ISSM_TIER/externalpackages/python/install"
+./configure --prefix "$ISSM_DIR/externalpackages/python/install"
 make
 make install
Index: /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-altix64-castor.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-altix64-castor.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-altix64-castor.sh	(revision 12156)
@@ -17,5 +17,5 @@
 	cd install
 	./config/configure.py \
-		--prefix="$ISSM_TIER/externalpackages/petsc/install" \
+		--prefix="$ISSM_DIR/externalpackages/petsc/install" \
 		--with-batch=1  \
 		--ISSM_ARCH=$ISSM_ARCH \
@@ -41,5 +41,5 @@
 	cd install
 	./config/configure.py  \
-		--prefix="$ISSM_TIER/externalpackages/petsc/install" \
+		--prefix="$ISSM_DIR/externalpackages/petsc/install" \
 		--with-batch=1  \
 		--ISSM_ARCH=$ISSM_ARCH \
Index: /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-cosmos.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-cosmos.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-cosmos.sh	(revision 12156)
@@ -12,5 +12,5 @@
 #configure
 cd install
-PETSC_DIR=$ISSM_TIER/externalpackages/petsc/install
+PETSC_DIR=$ISSM_DIR/externalpackages/petsc/install
 ./config/configure.py  \
 	--prefix=$PETSC_DIR \
Index: /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-linux64-astrid.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-linux64-astrid.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-linux64-astrid.sh	(revision 12156)
@@ -13,8 +13,8 @@
 cd install
 ./config/configure.py  \
-	--prefix="$ISSM_TIER/externalpackages/petsc/install" \
-	--with-mpi-dir=$ISSM_TIER/externalpackages/mpich2/install \
+	--prefix="$ISSM_DIR/externalpackages/petsc/install" \
+	--with-mpi-dir=$ISSM_DIR/externalpackages/mpich2/install \
 	--PETSC_ARCH=linux-gnu-amd64 \
-	--PETSC_DIR="$ISSM_TIER/externalpackages/petsc/install" \
+	--PETSC_DIR="$ISSM_DIR/externalpackages/petsc/install" \
 	--with-fc=gfortran \
 	--with-debugging=1 \
@@ -25,5 +25,5 @@
 	--download-blas=yes \
 	--download-f-blas-lapack=yes \
-	--FFLAGS=-I$ISSM_TIER/externalpackages/mpich2/install/include \
+	--FFLAGS=-I$ISSM_DIR/externalpackages/mpich2/install/include \
 	--download-plapack=yes \
 	--COPTFLAGS="-march=opteron -O2" \
Index: /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-macosx32-eric.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-macosx32-eric.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-macosx32-eric.sh	(revision 12156)
@@ -17,8 +17,8 @@
 	cd install
 	./config/configure.py  \
-		--prefix="$ISSM_TIER/externalpackages/petsc/install" \
-		--with-mpi-dir=$ISSM_TIER/externalpackages/mpich2/install \
+		--prefix="$ISSM_DIR/externalpackages/petsc/install" \
+		--with-mpi-dir=$ISSM_DIR/externalpackages/mpich2/install \
 		--PETSC_ARCH=macosx-gnu \
-		--PETSC_DIR="$ISSM_TIER/externalpackages/petsc/install" \
+		--PETSC_DIR="$ISSM_DIR/externalpackages/petsc/install" \
 		--with-fc=/usr/local/bin/gfortran \
 		--with-debugging=0 \
@@ -29,5 +29,5 @@
 		--download-blas=yes \
 		--download-f-blas-lapack=yes \
-		--FFLAGS="-I$ISSM_TIER/externalpackages/mpich2/install/include -L$ISSM_TIER/externalpackages/mpich2/install/lib -L/usr/local/bin -lmpich -lpmpich -lgfortran  -fPIC -arch i386" \
+		--FFLAGS="-I$ISSM_DIR/externalpackages/mpich2/install/include -L$ISSM_DIR/externalpackages/mpich2/install/lib -L/usr/local/bin -lmpich -lpmpich -lgfortran  -fPIC -arch i386" \
 		--download-plapack=yes \
 		--CXXFLAGS=" -fPIC -arch i386" \
@@ -43,17 +43,17 @@
 	cd install
 	./config/configure.py  \
-		--prefix="$ISSM_TIER/externalpackages/petsc/install" \
-		--with-mpi-dir=$ISSM_TIER/externalpackages/mpich2/install \
+		--prefix="$ISSM_DIR/externalpackages/petsc/install" \
+		--with-mpi-dir=$ISSM_DIR/externalpackages/mpich2/install \
 		--PETSC_ARCH=macosx-gnu \
-		--PETSC_DIR="$ISSM_TIER/externalpackages/petsc/install" \
+		--PETSC_DIR="$ISSM_DIR/externalpackages/petsc/install" \
 		--with-fc=/usr/local/bin/gfortran \
 		--with-debugging=0 \
 		--with-shared=0 \
-		--with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3  \
+		--with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3  \
 		--download-scalapack=yes \
 		--download-blacs=yes \
 		--download-blas=yes \
 		--download-f-blas-lapack=yes \
-		--FFLAGS="-I$ISSM_TIER/externalpackages/mpich2/install/include -L$ISSM_TIER/externalpackages/mpich2/install/lib -L/usr/local/bin -lmpich -lpmpich -lgfortran  -fPIC -arch i386" \
+		--FFLAGS="-I$ISSM_DIR/externalpackages/mpich2/install/include -L$ISSM_DIR/externalpackages/mpich2/install/lib -L/usr/local/bin -lmpich -lpmpich -lgfortran  -fPIC -arch i386" \
 		--download-plapack=yes \
 		--CXXFLAGS=" -fPIC -arch i386" \
Index: /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-macosx32-ogive.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-macosx32-ogive.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-macosx32-ogive.sh	(revision 12156)
@@ -12,8 +12,8 @@
 #configure
 cd install
-./config/configure.py  --prefix="$ISSM_TIER/externalpackages/petsc/install" \
-	--with-mpi-dir=$ISSM_TIER/externalpackages/mpich2/install \
+./config/configure.py  --prefix="$ISSM_DIR/externalpackages/petsc/install" \
+	--with-mpi-dir=$ISSM_DIR/externalpackages/mpich2/install \
 	--PETSC_ARCH=macosx-gnu \
-	--PETSC_DIR="$ISSM_TIER/externalpackages/petsc/install" \
+	--PETSC_DIR="$ISSM_DIR/externalpackages/petsc/install" \
 	--with-fc=/usr/local/bin/gfortran \
 	--with-debugging=0 \
@@ -24,5 +24,5 @@
 	--download-blas=yes \
 	--download-f-blas-lapack=yes \
-	--FFLAGS="-I$ISSM_TIER/externalpackages/mpich2/install/include -L$ISSM_TIER/externalpackages/mpich2/install/lib -L/usr/local/bin -lmpich -lpmpich -lgfortran" \
+	--FFLAGS="-I$ISSM_DIR/externalpackages/mpich2/install/include -L$ISSM_DIR/externalpackages/mpich2/install/lib -L/usr/local/bin -lmpich -lpmpich -lgfortran" \
 	--download-plapack=yes
 
Index: /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-macosx64.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-macosx64.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-macosx64.sh	(revision 12156)
@@ -13,8 +13,8 @@
 cd src
 ./config/configure.py \
-  --prefix="$ISSM_TIER/externalpackages/petsc/install" \
-  --PETSC_DIR="$ISSM_TIER/externalpackages/petsc/src" \
+  --prefix="$ISSM_DIR/externalpackages/petsc/install" \
+  --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
   --PETSC_ARCH=macosx-gnu \
-  --with-mpi-dir="$ISSM_TIER/externalpackages/mpich2/install" \
+  --with-mpi-dir="$ISSM_DIR/externalpackages/mpich2/install" \
   --with-debugging=0 \
   --with-shared-libraries=0 \
Index: /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-pleiades.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-pleiades.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-pleiades.sh	(revision 12156)
@@ -17,5 +17,5 @@
 	cd install
 	./config/configure.py  \
-		--prefix="$ISSM_TIER/externalpackages/petsc/install" \
+		--prefix="$ISSM_DIR/externalpackages/petsc/install" \
 		--with-batch=1  \
 		--PETSC_ARCH=$ISSM_ARCH \
@@ -44,5 +44,5 @@
 	cd install
 	./config/configure.py  \
-		--prefix="$ISSM_TIER/externalpackages/petsc/install" \
+		--prefix="$ISSM_DIR/externalpackages/petsc/install" \
 		--with-batch=1  \
 		--PETSC_ARCH=$ISSM_ARCH \
Index: /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-win32-eric.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-win32-eric.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-win32-eric.sh	(revision 12156)
@@ -14,7 +14,7 @@
 ./config/configure.py  \
 	--with-parallel-no \
-	--prefix="$ISSM_TIER/externalpackages/petsc/install" \
+	--prefix="$ISSM_DIR/externalpackages/petsc/install" \
 	--PETSC_ARCH=cygwin-intel \
-	--PETSC_DIR="$ISSM_TIER/externalpackages/petsc/install" \
+	--PETSC_DIR="$ISSM_DIR/externalpackages/petsc/install" \
 	--with-debugging=0 \
 	--with-mpi=0 \
Index: /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-win7.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-win7.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/petsc/install-2.3.2-win7.sh	(revision 12156)
@@ -14,7 +14,7 @@
 ./config/configure.py  \
 	--with-parallel-no \
-	--prefix="$ISSM_TIER/externalpackages/petsc/install" \
+	--prefix="$ISSM_DIR/externalpackages/petsc/install" \
 	--PETSC_ARCH=cygwin-intel \
-	--PETSC_DIR="$ISSM_TIER/externalpackages/petsc/install" \
+	--PETSC_DIR="$ISSM_DIR/externalpackages/petsc/install" \
 	--with-debugging=0 \
 	--with-mpi=0 \
Index: /issm/trunk-jpl/externalpackages/petsc/install-3.1-altix64-castor.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-3.1-altix64-castor.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/petsc/install-3.1-altix64-castor.sh	(revision 12156)
@@ -17,6 +17,6 @@
 	cd src
 	./config/configure.py \
-	  --prefix="$ISSM_TIER/externalpackages/petsc/install" \
-	  --PETSC_DIR="$ISSM_TIER/externalpackages/petsc/src" \
+	  --prefix="$ISSM_DIR/externalpackages/petsc/install" \
+	  --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
 	  --ISSM_ARCH=$ISSM_ARCH \
 	  --with-debugging=no \
@@ -41,6 +41,6 @@
 	cd src
 	./config/configure.py \
-		--prefix="$ISSM_TIER/externalpackages/petsc/install" \
-		--PETSC_DIR="$ISSM_TIER/externalpackages/petsc/src" \
+		--prefix="$ISSM_DIR/externalpackages/petsc/install" \
+		--PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
 		--with-batch=1  \
 		--ISSM_ARCH=$ISSM_ARCH \
Index: /issm/trunk-jpl/externalpackages/petsc/install-3.1-cosmos.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-3.1-cosmos.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/petsc/install-3.1-cosmos.sh	(revision 12156)
@@ -13,6 +13,6 @@
 cd src
 ./config/configure.py \
-	--prefix="$ISSM_TIER/externalpackages/petsc/install" \
-	--PETSC_DIR="$ISSM_TIER/externalpackages/petsc/src" \
+	--prefix="$ISSM_DIR/externalpackages/petsc/install" \
+	--PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
 	--with-batch=1  \
 	--ISSM_ARCH=$ISSM_ARCH \
Index: /issm/trunk-jpl/externalpackages/petsc/install-3.1-linux64-astrid.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-3.1-linux64-astrid.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/petsc/install-3.1-linux64-astrid.sh	(revision 12156)
@@ -13,8 +13,8 @@
 cd src
 ./config/configure.py \
- --prefix="$ISSM_TIER/externalpackages/petsc/install" \
- --with-mpi-dir=$ISSM_TIER/externalpackages/mpich2/install \
+ --prefix="$ISSM_DIR/externalpackages/petsc/install" \
+ --with-mpi-dir=$ISSM_DIR/externalpackages/mpich2/install \
  --PETSC_ARCH=linux-gnu-amd64 \
- --PETSC_DIR="$ISSM_TIER/externalpackages/petsc/src" \
+ --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
  --with-debugging=0 \
  --with-shared=0 \
@@ -25,5 +25,5 @@
  --download-f-blas-lapack=yes \
  --download-parmetis=yes \
- --FFLAGS=-I$ISSM_TIER/externalpackages/mpich2/install/include \
+ --FFLAGS=-I$ISSM_DIR/externalpackages/mpich2/install/include \
  --download-plapack=yes \
  --COPTFLAGS="-march=opteron -O2" \
Index: /issm/trunk-jpl/externalpackages/petsc/install-3.1-macosx32-mathieu.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-3.1-macosx32-mathieu.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/petsc/install-3.1-macosx32-mathieu.sh	(revision 12156)
@@ -13,8 +13,8 @@
 cd src
 ./config/configure.py  \
- --prefix="$ISSM_TIER/externalpackages/petsc/install" \
- --PETSC_DIR="$ISSM_TIER/externalpackages/petsc/src" \
+ --prefix="$ISSM_DIR/externalpackages/petsc/install" \
+ --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
  --PETSC_ARCH=macosx-gnu \
- --with-mpi-dir=$ISSM_TIER/externalpackages/mpich2/install \
+ --with-mpi-dir=$ISSM_DIR/externalpackages/mpich2/install \
  --with-debugging=0 \
  --with-shared=0 \
@@ -25,5 +25,5 @@
  --download-f-blas-lapack=yes \
  --download-plapack=yes \
- --FFLAGS="-I$ISSM_TIER/externalpackages/mpich2/install/include -arch i386" \
+ --FFLAGS="-I$ISSM_DIR/externalpackages/mpich2/install/include -arch i386" \
  --COPTFLAGS="-march=opteron -O2 -arch i386" \
  --FOPTFLAGS="-march=opteron -O2 -arch i386" \
Index: /issm/trunk-jpl/externalpackages/petsc/install-3.1-macosx32-ogive.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-3.1-macosx32-ogive.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/petsc/install-3.1-macosx32-ogive.sh	(revision 12156)
@@ -13,7 +13,7 @@
 cd src
 ./config/configure.py \
-	--prefix="$ISSM_TIER/externalpackages/petsc/install" \
-	--PETSC_DIR="$ISSM_TIER/externalpackages/petsc/src" \
-	--with-mpi-dir=$ISSM_TIER/externalpackages/mpich2/install \
+	--prefix="$ISSM_DIR/externalpackages/petsc/install" \
+	--PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
+	--with-mpi-dir=$ISSM_DIR/externalpackages/mpich2/install \
 	--PETSC_ARCH=macosx-gnu \
 	--with-fc=/usr/local/bin/gfortran \
@@ -30,5 +30,5 @@
 	--FOPTFLAGS="-march=opteron -O2 " \
 	--CXXOPTFLAGS="-march=opteron -O2 " \
-	--FFLAGS="-I$ISSM_TIER/externalpackages/mpich2/install/include -L$ISSM_TIER/externalpackages/mpich2/install/lib -L/usr/local/bin -lmpich -lpmpich -lgfortran " 
+	--FFLAGS="-I$ISSM_DIR/externalpackages/mpich2/install/include -L$ISSM_DIR/externalpackages/mpich2/install/lib -L/usr/local/bin -lmpich -lpmpich -lgfortran " 
 
 #Compile petsc and install it
Index: /issm/trunk-jpl/externalpackages/petsc/install-3.1-pleiades.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-3.1-pleiades.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/petsc/install-3.1-pleiades.sh	(revision 12156)
@@ -17,8 +17,8 @@
 	cd src
 	./config/configure.py \
-		--prefix="$ISSM_TIER/externalpackages/petsc/install" \
+		--prefix="$ISSM_DIR/externalpackages/petsc/install" \
 		--with-batch=1  \
 		--PETSC_ARCH="$ISSM_ARCH" \
-		--PETSC_DIR="$ISSM_TIER/externalpackages/petsc/src" \
+		--PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
 		--with-debugging=no \
 		--with-shared=0 \
@@ -44,8 +44,8 @@
 	cd src
 	./config/configure.py \
-	 --prefix="$ISSM_TIER/externalpackages/petsc/install" \
+	 --prefix="$ISSM_DIR/externalpackages/petsc/install" \
 	 --with-batch=1  \
 	 --PETSC_ARCH="$ISSM_ARCH" \
-	 --PETSC_DIR="$ISSM_TIER/externalpackages/petsc/src" \
+	 --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
 	 --with-debugging=no \
 	 --with-shared=0 \
@@ -57,5 +57,5 @@
 	 --download-scalapack=yes \
 	 --download-blacs=yes  \
-	 --with-plapack-dir=$ISSM_TIER/externalpackages/petsc/src/$ISSM_ARCH \
+	 --with-plapack-dir=$ISSM_DIR/externalpackages/petsc/src/$ISSM_ARCH \
 	 --download-parmetis=yes \
 	 --FFLAGS=-I/usr/include \
Index: /issm/trunk-jpl/externalpackages/petsc/install-3.1-win7.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-3.1-win7.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/petsc/install-3.1-win7.sh	(revision 12156)
@@ -14,7 +14,7 @@
 ./config/configure.py  \
 	--with-parallel-no \
-	--prefix="$ISSM_TIER/externalpackages/petsc/install" \
+	--prefix="$ISSM_DIR/externalpackages/petsc/install" \
 	--PETSC_ARCH=cygwin-intel \
-	--PETSC_DIR="$ISSM_TIER/externalpackages/petsc/src" \
+	--PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
 	--with-debugging=0 \
 	--with-mpi=0 \
@@ -26,8 +26,8 @@
 
 #./config/configure.py  \
-# --prefix="$ISSM_TIER/externalpackages/petsc/install" \
-# --PETSC_DIR="$ISSM_TIER/externalpackages/petsc/src" \
+# --prefix="$ISSM_DIR/externalpackages/petsc/install" \
+# --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
 # --PETSC_ARCH=macosx-gnu \
-# --with-mpi-dir=$ISSM_TIER/externalpackages/mpich2/install \
+# --with-mpi-dir=$ISSM_DIR/externalpackages/mpich2/install \
 # --with-debugging=0 \
 # --with-shared=0 \
@@ -38,5 +38,5 @@
 # --download-f-blas-lapack=yes \
 # --download-plapack=yes \
-# --FFLAGS="-I$ISSM_TIER/externalpackages/mpich2/install/include -arch i386" \
+# --FFLAGS="-I$ISSM_DIR/externalpackages/mpich2/install/include -arch i386" \
 # --COPTFLAGS="-march=opteron -O2 -arch i386" \
 # --FOPTFLAGS="-march=opteron -O2 -arch i386" \
Index: /issm/trunk-jpl/externalpackages/petsc/install-3.2-greenplanet.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-3.2-greenplanet.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/petsc/install-3.2-greenplanet.sh	(revision 12156)
@@ -13,6 +13,6 @@
 cd src
 ./config/configure.py \
-	--prefix="$ISSM_TIER/externalpackages/petsc/install" \
-	--PETSC_DIR="$ISSM_TIER/externalpackages/petsc/src" \
+	--prefix="$ISSM_DIR/externalpackages/petsc/install" \
+	--PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
 	--PETSC_ARCH="$ISSM_ARCH" \
 	--with-batch=1 \
Index: /issm/trunk-jpl/externalpackages/petsc/install-3.2-linux64.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-3.2-linux64.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/petsc/install-3.2-linux64.sh	(revision 12156)
@@ -13,9 +13,9 @@
 cd src
 ./config/configure.py \
-	--prefix="$ISSM_TIER/externalpackages/petsc/install" \
-	--with-mpi-dir=$ISSM_TIER/externalpackages/mpich2/install \
+	--prefix="$ISSM_DIR/externalpackages/petsc/install" \
+	--with-mpi-dir=$ISSM_DIR/externalpackages/mpich2/install \
 	--with-clanguage=C++ \
 	--PETSC_ARCH=linux-gnu-amd64 \
-	--PETSC_DIR="$ISSM_TIER/externalpackages/petsc/src" \
+	--PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
 	--with-debugging=0 \
 	--with-shared-libraries=0 \
Index: /issm/trunk-jpl/externalpackages/petsc/install-3.2-macosx64.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-3.2-macosx64.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/petsc/install-3.2-macosx64.sh	(revision 12156)
@@ -13,8 +13,8 @@
 cd src
 ./config/configure.py \
-  --prefix="$ISSM_TIER/externalpackages/petsc/install" \
-  --PETSC_DIR="$ISSM_TIER/externalpackages/petsc/src" \
+  --prefix="$ISSM_DIR/externalpackages/petsc/install" \
+  --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
   --PETSC_ARCH=macosx-gnu \
-  --with-mpi-dir="$ISSM_TIER/externalpackages/mpich2/install" \
+  --with-mpi-dir="$ISSM_DIR/externalpackages/mpich2/install" \
   --with-debugging=0 \
   --with-shared-libraries=0 \
Index: /issm/trunk-jpl/externalpackages/petsc/install-3.2-pleiades.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-3.2-pleiades.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/petsc/install-3.2-pleiades.sh	(revision 12156)
@@ -17,8 +17,8 @@
 	cd src
 	./config/configure.py \
-		--prefix="$ISSM_TIER/externalpackages/petsc/install" \
+		--prefix="$ISSM_DIR/externalpackages/petsc/install" \
 		--with-batch=1  \
 		--PETSC_ARCH="$ISSM_ARCH" \
-		--PETSC_DIR="$ISSM_TIER/externalpackages/petsc/src" \
+		--PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
 		--with-debugging=0 \
 		--with-shared-libraries=0 \
@@ -44,8 +44,8 @@
 	cd src
 	./config/configure.py \
-	 --prefix="$ISSM_TIER/externalpackages/petsc/install" \
+	 --prefix="$ISSM_DIR/externalpackages/petsc/install" \
 	 --with-batch=1  \
 	 --PETSC_ARCH="$ISSM_ARCH" \
-	 --PETSC_DIR="$ISSM_TIER/externalpackages/petsc/src" \
+	 --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
 	 --with-debugging=0 \
 	 --with-shared-libraries=0 \
@@ -57,5 +57,5 @@
 	 --download-scalapack=yes \
 	 --download-blacs=yes  \
-	 --with-plapack-dir=$ISSM_TIER/externalpackages/petsc/src/$ISSM_ARCH \
+	 --with-plapack-dir=$ISSM_DIR/externalpackages/petsc/src/$ISSM_ARCH \
 	 --download-parmetis=yes \
 	 --FFLAGS=-I/usr/include \
Index: /issm/trunk-jpl/externalpackages/petsc/install-dev-linux64.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/petsc/install-dev-linux64.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/petsc/install-dev-linux64.sh	(revision 12156)
@@ -29,9 +29,9 @@
 	cd src
 	./config/configure.py \
-	--prefix="$ISSM_TIER/externalpackages/petsc/install" \
-	--with-mpi-dir="$ISSM_TIER/externalpackages/mpich2/install" \
+	--prefix="$ISSM_DIR/externalpackages/petsc/install" \
+	--with-mpi-dir="$ISSM_DIR/externalpackages/mpich2/install" \
 	--with-clanguage=C++ \
 	--PETSC_ARCH=linux-gnu-amd64 \
-	--PETSC_DIR="$ISSM_TIER/externalpackages/petsc/src" \
+	--PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
 	--with-debugging=0 \
 	--with-shared-libraries=0 \
Index: /issm/trunk-jpl/externalpackages/python/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/python/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/python/install.sh	(revision 12156)
@@ -20,5 +20,5 @@
 #Configure doxygen
 cd src 
-./configure --prefix="$ISSM_TIER/externalpackages/python/install" --enable-framework="$ISSM_TIER/externalpackages/python/install"
+./configure --prefix="$ISSM_DIR/externalpackages/python/install" --enable-framework="$ISSM_DIR/externalpackages/python/install"
 if [ -z $1 ]; then
 	make
Index: /issm/trunk-jpl/externalpackages/qhull/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/qhull/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/qhull/install.sh	(revision 12156)
@@ -15,5 +15,5 @@
 #Configure qhull
 cd src
-./configure --prefix="$ISSM_TIER/externalpackages/qhull/install"
+./configure --prefix="$ISSM_DIR/externalpackages/qhull/install"
 make
 make install
Index: /issm/trunk-jpl/externalpackages/rats/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/rats/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/rats/install.sh	(revision 12156)
@@ -12,5 +12,5 @@
 #compile
 cd src
-./configure --prefix=$ISSM_TIER/externalpackages/rats/install
+./configure --prefix=$ISSM_DIR/externalpackages/rats/install
 make
 make install
Index: /issm/trunk-jpl/externalpackages/rose/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/rose/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/rose/install.sh	(revision 12156)
@@ -15,7 +15,7 @@
 cd build
 ../source/configure \
-	--prefix=$ISSM_TIER/externalpackages/rose/install \
-	--with-boost=$ISSM_TIER/externalpackages/boost/install\
-	--srcdir=$ISSM_TIER/externalpackages/rose/source
+	--prefix=$ISSM_DIR/externalpackages/rose/install \
+	--with-boost=$ISSM_DIR/externalpackages/boost/install\
+	--srcdir=$ISSM_DIR/externalpackages/rose/source
 
 if [ -z $1 ]; then
Index: /issm/trunk-jpl/externalpackages/swig/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/swig/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/swig/install.sh	(revision 12156)
@@ -13,14 +13,14 @@
 #Copy pcre prototype in include directory
 cd install 
-#cp $ISSM_TIER/externalpackages/pcre/install/pcre.h  ./Source/Include/
-#cp $ISSM_TIER/externalpackages/pcre/install/.libs/*  ./Source/Include/
-export CFLAGS="$CFLAGS -I$ISSM_TIER/externalpackages/pcre/install"
-export LDFLAGS="-L$ISSM_TIER/externalpackages/pcre/install/.libs/"
+#cp $ISSM_DIR/externalpackages/pcre/install/pcre.h  ./Source/Include/
+#cp $ISSM_DIR/externalpackages/pcre/install/.libs/*  ./Source/Include/
+export CFLAGS="$CFLAGS -I$ISSM_DIR/externalpackages/pcre/install"
+export LDFLAGS="-L$ISSM_DIR/externalpackages/pcre/install/.libs/"
 export LIBS="-lpcre"
 #Configure doxygen
 ./configure \
- --prefix="$ISSM_TIER/externalpackages/python/install" \
- --with-pcre-prefix="$ISSM_TIER/externalpackages/pcre/install" \
- --with-pcre-exec-prefix="$ISSM_TIER/externalpackages/pcre/install"
+ --prefix="$ISSM_DIR/externalpackages/python/install" \
+ --with-pcre-prefix="$ISSM_DIR/externalpackages/pcre/install" \
+ --with-pcre-exec-prefix="$ISSM_DIR/externalpackages/pcre/install"
 make 
 make install
Index: /issm/trunk-jpl/externalpackages/tao/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/tao/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/tao/install.sh	(revision 12156)
@@ -14,5 +14,5 @@
 rm -rf tao-2.0-p3
 cd install
-export TAO_DIR="$ISSM_TIER/externalpackages/tao/install/"
+export TAO_DIR="$ISSM_DIR/externalpackages/tao/install/"
 
 #petsc needs to be compiled with --with-clanguage=C++
Index: /issm/trunk-jpl/externalpackages/valgrind/install-altix64.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/valgrind/install-altix64.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/valgrind/install-altix64.sh	(revision 12156)
@@ -14,5 +14,5 @@
 #configure
 cd install
-./configure --prefix="$ISSM_TIER/externalpackages/valgrind/install"
+./configure --prefix="$ISSM_DIR/externalpackages/valgrind/install"
 
 #Compile valgrind
Index: /issm/trunk-jpl/externalpackages/valgrind/install-linux64.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/valgrind/install-linux64.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/valgrind/install-linux64.sh	(revision 12156)
@@ -14,5 +14,5 @@
 #configure
 cd install
-./configure  --prefix="$ISSM_TIER/externalpackages/valgrind/install"
+./configure  --prefix="$ISSM_DIR/externalpackages/valgrind/install"
 
 #Compile valgrind
Index: /issm/trunk-jpl/externalpackages/valgrind/install-macosx32.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/valgrind/install-macosx32.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/valgrind/install-macosx32.sh	(revision 12156)
@@ -14,5 +14,5 @@
 #configure
 cd install
-./configure  --prefix="$ISSM_TIER/externalpackages/valgrind/install" --enable-only32bit
+./configure  --prefix="$ISSM_DIR/externalpackages/valgrind/install" --enable-only32bit
 
 #Compile valgrind
Index: /issm/trunk-jpl/externalpackages/valgrind/install-macosx64.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/valgrind/install-macosx64.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/valgrind/install-macosx64.sh	(revision 12156)
@@ -14,5 +14,5 @@
 #configure
 cd install
-./configure  --prefix="$ISSM_TIER/externalpackages/valgrind/install" --enable-only64bit
+./configure  --prefix="$ISSM_DIR/externalpackages/valgrind/install" --enable-only64bit
 
 #Compile valgrind
Index: /issm/trunk-jpl/externalpackages/valgrind/install-win32.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/valgrind/install-win32.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/valgrind/install-win32.sh	(revision 12156)
@@ -14,5 +14,5 @@
 #configure
 cd install
-./configure  --prefix="$ISSM_TIER/externalpackages/valgrind/install"
+./configure  --prefix="$ISSM_DIR/externalpackages/valgrind/install"
 
 #Compile valgrind
Index: /issm/trunk-jpl/externalpackages/vim/install.sh
===================================================================
--- /issm/trunk-jpl/externalpackages/vim/install.sh	(revision 12155)
+++ /issm/trunk-jpl/externalpackages/vim/install.sh	(revision 12156)
@@ -19,5 +19,5 @@
 cd src/src 
 ./configure \
-	--prefix "$ISSM_TIER/externalpackages/vim/install" \
+	--prefix "$ISSM_DIR/externalpackages/vim/install" \
 	--with-gcc "/usr/bin/gcc"