Index: /issm/trunk-jpl/src/Makefile.am =================================================================== --- /issm/trunk-jpl/src/Makefile.am (revision 11664) +++ /issm/trunk-jpl/src/Makefile.am (revision 11665) @@ -1,8 +1,2 @@ EXTRA_DIST = perl pro SUBDIRS = c mex m - -if ADIC2 -SUBDIRS += ad -endif - - Index: sm/trunk-jpl/src/ad/Makefile.am =================================================================== --- /issm/trunk-jpl/src/ad/Makefile.am (revision 11664) +++ (revision ) @@ -1,965 +1,0 @@ -INCLUDES = @DAKOTAINCL@ @SHAPELIBINCL@ @PETSCINCL@ @SLEPCINCL@ @MPIINCL@ @MATLABINCL@ @METISINCL@ @CHACOINCL@ @SCOTCHINCL@ @PLAPACKINCL@ @BLASLAPACKINCL@ @MKLINCL@ @MUMPSINCL@ @TRIANGLEINCL@ @HYPREINCL@ @MLINCL@ @TAOINCL@ -EXEEXT=$(ISSMEXT) - -#Library declaration {{{1 -#Compile serial library, and then try and compile parallel library -if NOSERIAL -if NOPARALLEL -lib_LIBRARIES = -else -lib_LIBRARIES = libpISSM.a libOverload.a -endif -else -if NOPARALLEL -lib_LIBRARIES = libISSM.a libOverload.a -else -lib_LIBRARIES = libISSM.a libpISSM.a libOverload.a -endif -endif -#}}} - -#sources -#Core sources{{{1 -core_sources = ./include/macros.h\ - ./include/typedefs.h\ - ./include/types.h\ - ./include/include.h\ - ./objects/objects.h\ - ./objects/Object.h\ - ./objects/Gauss/GaussTria.h\ - ./objects/Gauss/GaussTria.cpp\ - ./objects/Update.h\ - ./objects/Element.h\ - ./objects/FemModel.h\ - ./objects/FemModel.cpp\ - ./objects/Material.h\ - ./objects/Load.h\ - ./objects/Contour.h\ - ./objects/Contour.cpp\ - ./objects/OptArgs.h\ - ./objects/OptPars.h\ - ./objects/Loads/Friction.h\ - ./objects/Loads/Friction.cpp\ - ./objects/Inputs/TransientInput.h\ - ./objects/Inputs/TransientInput.cpp\ - ./objects/Constraints/SpcTransient.cpp\ - ./objects/Constraints/SpcTransient.h\ - ./objects/DofIndexing.h\ - ./objects/DofIndexing.cpp\ - ./objects/IoModel.h\ - ./objects/IoModel.cpp\ - ./objects/Node.h\ - ./objects/Node.cpp\ - ./objects/Segment.h\ - ./objects/Segment.cpp\ - ./objects/Vertex.h\ - ./objects/Vertex.cpp\ - ./objects/Hook.h\ - ./objects/Hook.cpp\ - ./objects/Patch.h\ - ./objects/Patch.cpp\ - ./objects/ElementResults/ElementResultLocal.h\ - ./objects/ElementResults/DoubleElementResult.h\ - ./objects/ElementResults/DoubleElementResult.cpp\ - ./objects/ElementResults/TriaP1ElementResult.h\ - ./objects/ElementResults/TriaP1ElementResult.cpp\ - ./objects/ElementResults/BoolElementResult.h\ - ./objects/ElementResults/BoolElementResult.cpp\ - ./objects/ExternalResults/ExternalResult.h\ - ./objects/ExternalResults/BoolExternalResult.h\ - ./objects/ExternalResults/BoolExternalResult.cpp\ - ./objects/ExternalResults/DoubleExternalResult.h\ - ./objects/ExternalResults/DoubleExternalResult.cpp\ - ./objects/ExternalResults/DoubleVecExternalResult.h\ - ./objects/ExternalResults/DoubleVecExternalResult.cpp\ - ./objects/ExternalResults/DoubleMatExternalResult.h\ - ./objects/ExternalResults/DoubleMatExternalResult.cpp\ - ./objects/ExternalResults/IntExternalResult.h\ - ./objects/ExternalResults/IntExternalResult.cpp\ - ./objects/ExternalResults/StringExternalResult.h\ - ./objects/ExternalResults/StringExternalResult.cpp\ - ./objects/ExternalResults/PetscVecExternalResult.h\ - ./objects/ExternalResults/PetscVecExternalResult.cpp\ - ./objects/Elements/Tria.h\ - ./objects/Elements/Tria.cpp\ - ./objects/Elements/TriaHook.h\ - ./objects/Elements/TriaHook.cpp\ - ./objects/Elements/TriaRef.h\ - ./objects/Elements/TriaRef.cpp\ - ./objects/Inputs/Input.h\ - ./objects/Inputs/InputLocal.h\ - ./objects/Inputs/TriaP1Input.h\ - ./objects/Inputs/TriaP1Input.cpp\ - ./objects/Inputs/BoolInput.h\ - ./objects/Inputs/BoolInput.cpp\ - ./objects/Inputs/IntInput.h\ - ./objects/Inputs/IntInput.cpp\ - ./objects/Inputs/DoubleInput.h\ - ./objects/Inputs/DoubleInput.cpp\ - ./objects/Inputs/DatasetInput.h\ - ./objects/Inputs/DatasetInput.cpp\ - ./objects/Materials/Matice.h\ - ./objects/Materials/Matice.cpp\ - ./objects/Materials/Matpar.h\ - ./objects/Materials/Matpar.cpp\ - ./objects/Constraints/Constraint.h\ - ./objects/Constraints/SpcStatic.cpp\ - ./objects/Constraints/SpcStatic.h\ - ./objects/Constraints/SpcDynamic.cpp\ - ./objects/Constraints/SpcDynamic.h\ - ./objects/Loads/Penpair.cpp\ - ./objects/Loads/Penpair.h\ - ./objects/Loads/Pengrid.cpp\ - ./objects/Loads/Pengrid.h\ - ./objects/Loads/Icefront.cpp\ - ./objects/Loads/Icefront.h\ - ./objects/Loads/Numericalflux.cpp\ - ./objects/Loads/Numericalflux.h\ - ./objects/Numerics/ElementMatrix.h\ - ./objects/Numerics/ElementMatrix.cpp\ - ./objects/Numerics/ElementVector.h\ - ./objects/Numerics/ElementVector.cpp\ - ./objects/Params/Param.h\ - ./objects/Params/BoolParam.cpp\ - ./objects/Params/BoolParam.h\ - ./objects/Params/IntParam.cpp\ - ./objects/Params/IntParam.h\ - ./objects/Params/IntVecParam.cpp\ - ./objects/Params/IntVecParam.h\ - ./objects/Params/IntMatParam.cpp\ - ./objects/Params/IntMatParam.h\ - ./objects/Params/DoubleParam.cpp\ - ./objects/Params/DoubleParam.h\ - ./objects/Params/FileParam.cpp\ - ./objects/Params/FileParam.h\ - ./objects/Params/PetscMatParam.cpp\ - ./objects/Params/PetscMatParam.h\ - ./objects/Params/StringArrayParam.cpp\ - ./objects/Params/StringArrayParam.h\ - ./objects/Params/DoubleMatParam.cpp\ - ./objects/Params/DoubleMatParam.h\ - ./objects/Params/DoubleTransientMatParam.cpp\ - ./objects/Params/DoubleTransientMatParam.h\ - ./objects/Params/DoubleMatArrayParam.cpp\ - ./objects/Params/DoubleMatArrayParam.h\ - ./objects/Params/DoubleVecParam.cpp\ - ./objects/Params/DoubleVecParam.h\ - ./objects/Params/PetscVecParam.cpp\ - ./objects/Params/PetscVecParam.h\ - ./objects/Params/StringParam.cpp\ - ./objects/Params/StringParam.h\ - ./Container/Container.h\ - ./Container/Constraints.h\ - ./Container/Constraints.cpp\ - ./Container/DataSet.h\ - ./Container/DataSet.cpp\ - ./Container/Elements.h\ - ./Container/Elements.cpp\ - ./Container/Inputs.h\ - ./Container/Inputs.cpp\ - ./Container/Loads.h\ - ./Container/Loads.cpp\ - ./Container/Materials.h\ - ./Container/Materials.cpp\ - ./Container/Nodes.h\ - ./Container/Nodes.cpp\ - ./Container/Options.h\ - ./Container/Options.cpp\ - ./Container/Parameters.h\ - ./Container/Parameters.cpp\ - ./Container/Results.h\ - ./Container/Results.cpp\ - ./Container/Vertices.h\ - ./Container/Vertices.cpp\ - ./shared/shared.h\ - ./shared/Alloc/alloc.h\ - ./shared/Alloc/alloc.cpp\ - ./shared/Matrix/matrix.h\ - ./shared/Matrix/MatrixUtils.cpp\ - ./shared/Dofs/dofs.h\ - ./shared/Dofs/dofsetgen.cpp\ - ./shared/Numerics/numerics.h\ - ./shared/Numerics/Verbosity.h\ - ./shared/Numerics/Verbosity.cpp\ - ./shared/Numerics/IsInputConverged.cpp\ - ./shared/Numerics/GaussPoints.h\ - ./shared/Numerics/GaussPoints.cpp\ - ./shared/Numerics/cross.cpp\ - ./shared/Numerics/isnan.h\ - ./shared/Numerics/isnan.cpp\ - ./shared/Numerics/extrema.cpp\ - ./shared/Numerics/XZvectorsToCoordinateSystem.cpp\ - ./shared/Numerics/UnitConversion.cpp\ - ./shared/Numerics/PetscOptionsFromAnalysis.cpp\ - ./shared/Exceptions/exceptions.h\ - ./shared/Exceptions/Exceptions.cpp\ - ./shared/Exceptions/exprintf.cpp\ - ./shared/Sorting/binary_search.cpp\ - ./shared/Sorting/sorting.h\ - ./shared/Elements/elements.h\ - ./shared/Elements/Paterson.cpp\ - ./shared/Elements/Arrhenius.cpp\ - ./shared/Elements/GetVerticesCoordinates.cpp\ - ./shared/Elements/GetLocalDofList.cpp\ - ./shared/Elements/GetGlobalDofList.cpp\ - ./shared/Elements/GetNumberOfDofs.cpp\ - ./shared/String/sharedstring.h\ - ./toolkits/petsc\ - ./toolkits/petsc/patches\ - ./toolkits/petsc/patches/SolverEnum.h\ - ./toolkits/petsc/patches/petscpatches.h\ - ./toolkits/petsc/patches/MatlabMatrixToPetscMatrix.cpp\ - ./toolkits/petsc/patches/MatlabVectorToPetscVector.cpp\ - ./toolkits/petsc/patches/PetscMatrixToMatlabMatrix.cpp\ - ./toolkits/petsc/patches/PetscVectorToMatlabVector.cpp\ - ./toolkits/petsc/patches/MatlabMatrixToDoubleMatrix.cpp\ - ./toolkits/petsc/patches/MatlabVectorToDoubleVector.cpp\ - ./toolkits/petsc/patches/PetscDetermineLocalSize.cpp\ - ./toolkits/petsc/patches/VecTranspose.cpp\ - ./toolkits/petsc/patches/VecToMPISerial.cpp\ - ./toolkits/petsc/patches/MatToSerial.cpp\ - ./toolkits/petsc/patches/VecMerge.cpp\ - ./toolkits/petsc/patches/NewVec.cpp\ - ./toolkits/petsc/patches/PetscOptionsDetermineSolverType.cpp\ - ./toolkits/petsc/patches/PetscOptionsInsertMultipleString.cpp\ - ./toolkits/petsc/patches/NewMat.cpp\ - ./toolkits/petsc/patches/SerialToVec.cpp\ - ./toolkits/petsc/patches/VecFree.cpp\ - ./toolkits/petsc/patches/VecDuplicatePatch.cpp\ - ./toolkits/petsc/patches/KSPFree.cpp\ - ./toolkits/petsc/patches/ISFree.cpp\ - ./toolkits/petsc/patches/MatFree.cpp\ - ./toolkits/petsc/patches/GetOwnershipBoundariesFromRange.cpp\ - ./toolkits/petsc/patches/VecPartition.cpp\ - ./toolkits/petsc/patches/MatPartition.cpp\ - ./toolkits/petsc/patches/MatInvert.cpp\ - ./toolkits/petsc/patches/MatMultPatch.cpp\ - ./toolkits/petsc/petscincludes.h\ - ./toolkits/mpi/mpiincludes.h\ - ./toolkits/mpi/patches/mpipatches.h\ - ./toolkits/mpi/patches/MPI_Upperrow.cpp\ - ./toolkits/mpi/patches/MPI_Lowerrow.cpp\ - ./toolkits/mpi/patches/MPI_Boundariesfromrange.cpp\ - ./toolkits/metis/metisincludes.h\ - ./toolkits/metis/patches/metispatches.h\ - ./toolkits/metis/patches/METIS_PartMeshNodalPatch.cpp\ - ./toolkits/triangle/triangleincludes.h\ - ./toolkits.h\ - ./io/io.h\ - ./io/Disk/diskio.h\ - ./io/Disk/pfopen.cpp\ - ./io/Disk/pfclose.cpp\ - ./io/PrintfFunction.cpp\ - ./EnumDefinitions/EnumDefinitions.h\ - ./modules/ModelProcessorx/ModelProcessorx.h\ - ./modules/ModelProcessorx/ModelProcessorx.cpp\ - ./modules/ModelProcessorx/DistributeNumDofs.cpp\ - ./modules/ModelProcessorx/ElementsAndVerticesPartitioning.cpp\ - ./modules/ModelProcessorx/NodesPartitioning.cpp\ - ./modules/ModelProcessorx/SortDataSets.cpp\ - ./modules/ModelProcessorx/UpdateCounters.cpp\ - ./modules/ModelProcessorx/CreateDataSets.cpp\ - ./modules/ModelProcessorx/CreateParameters.cpp\ - ./modules/ModelProcessorx/CreateSingleNodeToElementConnectivity.cpp\ - ./modules/ModelProcessorx/CreateNumberNodeToElementConnectivity.cpp\ - ./modules/ModelProcessorx/CreateElementsVerticesAndMaterials.cpp\ - ./modules/ParsePetscOptionsx/ParsePetscOptionsx.h\ - ./modules/ParsePetscOptionsx/ParsePetscOptionsx.cpp\ - ./modules/NodesDofx/NodesDofx.h\ - ./modules/NodesDofx/NodesDofx.cpp\ - ./modules/NodalValuex/NodalValuex.h\ - ./modules/NodalValuex/NodalValuex.cpp\ - ./modules/VerticesDofx/VerticesDofx.h\ - ./modules/VerticesDofx/VerticesDofx.cpp\ - ./modules/OutputResultsx/OutputResultsx.h\ - ./modules/OutputResultsx/OutputResultsx.cpp\ - ./modules/InputDuplicatex/InputDuplicatex.h\ - ./modules/InputDuplicatex/InputDuplicatex.cpp\ - ./modules/InputScalex/InputScalex.h\ - ./modules/InputScalex/InputScalex.cpp\ - ./modules/SurfaceAreax/SurfaceAreax.h\ - ./modules/SurfaceAreax/SurfaceAreax.cpp\ - ./modules/CreateNodalConstraintsx/CreateNodalConstraintsx.h\ - ./modules/CreateNodalConstraintsx/CreateNodalConstraintsx.cpp\ - ./modules/UpdateDynamicConstraintsx/UpdateDynamicConstraintsx.h\ - ./modules/UpdateDynamicConstraintsx/UpdateDynamicConstraintsx.cpp\ - ./modules/IoModelToConstraintsx/IoModelToConstraintsx.h\ - ./modules/IoModelToConstraintsx/IoModelToConstraintsx.cpp\ - ./modules/InputUpdateFromConstantx/InputUpdateFromConstantx.h\ - ./modules/InputUpdateFromConstantx/InputUpdateFromConstantx.cpp\ - ./modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.h\ - ./modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.cpp\ - ./modules/GetSolutionFromInputsx/GetSolutionFromInputsx.h\ - ./modules/GetSolutionFromInputsx/GetSolutionFromInputsx.cpp\ - ./modules/GetVectorFromInputsx/GetVectorFromInputsx.h\ - ./modules/GetVectorFromInputsx/GetVectorFromInputsx.cpp\ - ./modules/InputUpdateFromVectorx/InputUpdateFromVectorx.h\ - ./modules/InputUpdateFromVectorx/InputUpdateFromVectorx.cpp\ - ./modules/InputArtificialNoisex/InputArtificialNoisex.h\ - ./modules/InputArtificialNoisex/InputArtificialNoisex.cpp\ - ./modules/TimeAdaptx/TimeAdaptx.h\ - ./modules/TimeAdaptx/TimeAdaptx.cpp\ - ./modules/UpdateVertexPositionsx/UpdateVertexPositionsx.h\ - ./modules/UpdateVertexPositionsx/UpdateVertexPositionsx.cpp\ - ./modules/ConfigureObjectsx/ConfigureObjectsx.h\ - ./modules/ConfigureObjectsx/ConfigureObjectsx.cpp\ - ./modules/ComputeBasalStressx/ComputeBasalStressx.h\ - ./modules/ComputeBasalStressx/ComputeBasalStressx.cpp\ - ./modules/ComputeStrainRatex/ComputeStrainRatex.h\ - ./modules/ComputeStrainRatex/ComputeStrainRatex.cpp\ - ./modules/SpcNodesx/SpcNodesx.h\ - ./modules/SpcNodesx/SpcNodesx.cpp\ - ./modules/PositiveDegreeDayx/PositiveDegreeDayx.h\ - ./modules/PositiveDegreeDayx/PositiveDegreeDayx.cpp\ - ./modules/UpdateConstraintsx/UpdateConstraintsx.h\ - ./modules/UpdateConstraintsx/UpdateConstraintsx.cpp\ - ./modules/MeshPartitionx/MeshPartitionx.cpp\ - ./modules/MeshPartitionx/MeshPartitionx.h\ - ./modules/Reducevectorgtofx/Reducevectorgtofx.cpp\ - ./modules/Reducevectorgtofx/Reducevectorgtofx.h\ - ./modules/Reduceloadx/Reduceloadx.h\ - ./modules/Reduceloadx/Reduceloadx.cpp\ - ./modules/EnumToStringx/EnumToStringx.cpp\ - ./modules/EnumToStringx/EnumToStringx.h\ - ./modules/StringToEnumx/StringToEnumx.cpp\ - ./modules/StringToEnumx/StringToEnumx.h\ - ./modules/SystemMatricesx/SystemMatricesx.cpp\ - ./modules/SystemMatricesx/SystemMatricesx.h\ - ./modules/CreateJacobianMatrixx/CreateJacobianMatrixx.cpp\ - ./modules/CreateJacobianMatrixx/CreateJacobianMatrixx.h\ - ./modules/ConstraintsStatex/ConstraintsStatex.cpp\ - ./modules/ConstraintsStatex/ConstraintsStatex.h\ - ./modules/ConstraintsStatex/ConstraintsStateLocal.h\ - ./modules/Responsex/Responsex.h\ - ./modules/Responsex/Responsex.cpp\ - ./modules/RequestedOutputsx/RequestedOutputsx.h\ - ./modules/RequestedOutputsx/RequestedOutputsx.cpp\ - ./modules/ResetConstraintsx/ResetConstraintsx.h\ - ./modules/ResetConstraintsx/ResetConstraintsx.cpp\ - ./modules/ResetCoordinateSystemx/ResetCoordinateSystemx.h\ - ./modules/ResetCoordinateSystemx/ResetCoordinateSystemx.cpp\ - ./modules/Solverx/Solverx.cpp\ - ./modules/Solverx/Solverx.h\ - ./modules/Solverx/DofTypesToIndexSet.cpp\ - ./modules/VecMergex/VecMergex.cpp\ - ./modules/VecMergex/VecMergex.h\ - ./modules/Mergesolutionfromftogx/Mergesolutionfromftogx.cpp\ - ./modules/Mergesolutionfromftogx/Mergesolutionfromftogx.h\ - ./modules/InputToResultx/InputToResultx.cpp\ - ./modules/InputToResultx/InputToResultx.h\ - ./modules/InputConvergencex/InputConvergencex.cpp\ - ./modules/InputConvergencex/InputConvergencex.h\ - ./solutions/convergence.cpp\ - ./solutions/ProcessArguments.cpp\ - ./solutions/WriteLockFile.cpp\ - ./solutions/ResetBoundaryConditions.cpp\ - ./solutions/AnalysisConfiguration.cpp\ - ./solutions/CorePointerFromSolutionEnum.cpp\ - ./solvers/solver_linear.cpp\ - ./solvers/solver_nonlinear.cpp\ - ./solvers/solver_newton.cpp -#}}} -#DAKOTA sources {{{1 -dakota_sources = ./objects/DakotaPlugin.h\ - ./objects/DakotaPlugin.cpp\ - ./modules/InputUpdateFromDakotax/InputUpdateFromDakotax.h\ - ./modules/InputUpdateFromDakotax/InputUpdateFromDakotax.cpp\ - ./modules/DakotaResponsesx/DakotaResponsesx.h\ - ./modules/DakotaResponsesx/DakotaResponsesx.cpp\ - ./modules/InputUpdateFromVectorDakotax/InputUpdateFromVectorDakotax.h\ - ./modules/InputUpdateFromVectorDakotax/InputUpdateFromVectorDakotax.cpp\ - ./modules/InputUpdateFromMatrixDakotax/InputUpdateFromMatrixDakotax.h\ - ./modules/InputUpdateFromMatrixDakotax/InputUpdateFromMatrixDakotax.cpp\ - ./modules/AverageOntoPartitionx/AverageOntoPartitionx.cpp\ - ./modules/AverageOntoPartitionx/AverageOntoPartitionx.h\ - ./modules/Dakotax/Dakotax.h\ - ./modules/Dakotax/Dakotax.cpp\ - ./modules/Dakotax/DakotaMPI_Bcast.cpp\ - ./modules/Dakotax/DakotaFree.cpp\ - ./modules/Dakotax/SpawnCore.cpp\ - ./modules/Dakotax/DescriptorIndex.cpp\ - ./modules/AverageOntoPartitionx/AverageOntoPartitionx.cpp\ - ./modules/ModelProcessorx/Dakota/CreateParametersDakota.cpp\ - ./modules/AverageOntoPartitionx/AverageOntoPartitionx.h -dakota_psources= ./modules/Dakotax/SpawnCoreParallel.cpp -#}}} -#Transient sources {{{1 -transient_sources = ./modules/ModelProcessorx/Transient/UpdateElementsTransient.cpp -transient_psources = ./solutions/transient_core.cpp -#}}} -#Steadystate sources {{{1 -steadystate_psources = ./solutions/steadystate_core.cpp\ - ./solutions/steadystateconvergence.cpp -#}}} -#Prognostic sources {{{1 -prognostic_sources = ./modules/ModelProcessorx/Prognostic/UpdateElementsPrognostic.cpp\ - ./modules/ModelProcessorx/Prognostic/CreateNodesPrognostic.cpp\ - ./modules/ModelProcessorx/Prognostic/CreateConstraintsPrognostic.cpp\ - ./modules/ModelProcessorx/Prognostic/CreateLoadsPrognostic.cpp -prognostic_psources = ./solutions/prognostic_core.cpp -#}}} -#Thermal sources {{{1 -thermal_sources = ./modules/ModelProcessorx/Thermal/UpdateElementsThermal.cpp\ - ./modules/ModelProcessorx/Thermal/CreateNodesThermal.cpp\ - ./modules/ModelProcessorx/Thermal/CreateConstraintsThermal.cpp\ - ./modules/ModelProcessorx/Thermal/CreateLoadsThermal.cpp\ - ./modules/ModelProcessorx/Enthalpy/UpdateElementsEnthalpy.cpp\ - ./modules/ModelProcessorx/Enthalpy/CreateNodesEnthalpy.cpp\ - ./modules/ModelProcessorx/Enthalpy/CreateConstraintsEnthalpy.cpp\ - ./modules/ModelProcessorx/Enthalpy/CreateLoadsEnthalpy.cpp\ - ./modules/ModelProcessorx/Melting/UpdateElementsMelting.cpp\ - ./modules/ModelProcessorx/Melting/CreateNodesMelting.cpp\ - ./modules/ModelProcessorx/Melting/CreateConstraintsMelting.cpp\ - ./modules/ModelProcessorx/Melting/CreateLoadsMelting.cpp\ - ./modules/ConstraintsStatex/ThermalConstraintsState.cpp\ - ./modules/ConstraintsStatex/ThermalIsPresent.cpp\ - ./modules/ResetConstraintsx/ThermalConstraintsReset.cpp - -thermal_psources = ./solutions/thermal_core.cpp\ - ./solutions/thermal_core_step.cpp\ - ./solutions/enthalpy_core.cpp\ - ./solutions/enthalpy_core_step.cpp\ - ./solvers/solver_thermal_nonlinear.cpp -#}}} -#Control sources {{{1 -control_sources= ./modules/ControlInputGetGradientx/ControlInputGetGradientx.cpp\ - ./modules/ControlInputGetGradientx/ControlInputGetGradientx.h\ - ./modules/ControlInputSetGradientx/ControlInputSetGradientx.cpp\ - ./modules/ControlInputSetGradientx/ControlInputSetGradientx.h\ - ./modules/ControlInputScaleGradientx/ControlInputScaleGradientx.cpp\ - ./modules/ControlInputScaleGradientx/ControlInputScaleGradientx.h\ - ./modules/GetVectorFromControlInputsx/GetVectorFromControlInputsx.cpp\ - ./modules/GetVectorFromControlInputsx/GetVectorFromControlInputsx.h\ - ./modules/SetControlInputsFromVectorx/SetControlInputsFromVectorx.cpp\ - ./modules/SetControlInputsFromVectorx/SetControlInputsFromVectorx.h\ - ./modules/ModelProcessorx/Control/CreateParametersControl.cpp\ - ./modules/ModelProcessorx/Control/UpdateElementsAndMaterialsControl.cpp\ - ./modules/InputControlUpdatex/InputControlUpdatex.h\ - ./modules/InputControlUpdatex/InputControlUpdatex.cpp\ - ./modules/SurfaceAbsVelMisfitx/SurfaceAbsVelMisfitx.h\ - ./modules/SurfaceAbsVelMisfitx/SurfaceAbsVelMisfitx.cpp\ - ./modules/SurfaceRelVelMisfitx/SurfaceRelVelMisfitx.h\ - ./modules/SurfaceRelVelMisfitx/SurfaceRelVelMisfitx.cpp\ - ./modules/SurfaceLogVelMisfitx/SurfaceLogVelMisfitx.h\ - ./modules/SurfaceLogVelMisfitx/SurfaceLogVelMisfitx.cpp\ - ./modules/SurfaceLogVxVyMisfitx/SurfaceLogVxVyMisfitx.h\ - ./modules/SurfaceLogVxVyMisfitx/SurfaceLogVxVyMisfitx.cpp\ - ./modules/SurfaceAverageVelMisfitx/SurfaceAverageVelMisfitx.h\ - ./modules/SurfaceAverageVelMisfitx/SurfaceAverageVelMisfitx.cpp\ - ./modules/ThicknessAbsMisfitx/ThicknessAbsMisfitx.h\ - ./modules/ThicknessAbsMisfitx/ThicknessAbsMisfitx.cpp\ - ./modules/CostFunctionx/CostFunctionx.h\ - ./modules/CostFunctionx/CostFunctionx.cpp\ - ./modules/Orthx/Orthx.h\ - ./modules/Orthx/Orthx.cpp\ - ./modules/Gradjx/Gradjx.h\ - ./modules/Gradjx/Gradjx.cpp\ - ./modules/DragCoefficientAbsGradientx/DragCoefficientAbsGradientx.cpp\ - ./modules/DragCoefficientAbsGradientx/DragCoefficientAbsGradientx.h\ - ./modules/ThicknessAbsGradientx/ThicknessAbsGradientx.cpp\ - ./modules/ThicknessAbsGradientx/ThicknessAbsGradientx.h\ - ./modules/RheologyBbarAbsGradientx/RheologyBbarAbsGradientx.cpp\ - ./modules/RheologyBbarAbsGradientx/RheologyBbarAbsGradientx.h\ - ./objects/Inputs/ControlInput.h\ - ./objects/Inputs/ControlInput.cpp\ - ./shared/Numerics/BrentSearch.cpp\ - ./shared/Numerics/OptimalSearch.cpp\ - ./shared/Numerics/OptFunc.cpp - -control_psources=./solutions/control_core.cpp\ - ./solutions/controltao_core.cpp\ - ./solutions/controlrestart.cpp\ - ./solutions/controlconvergence.cpp\ - ./solutions/objectivefunctionC.cpp\ - ./solutions/gradient_core.cpp\ - ./solutions/adjointdiagnostic_core.cpp\ - ./solutions/adjointbalancethickness_core.cpp\ - ./solutions/AdjointCorePointerFromSolutionEnum.cpp\ - ./solvers/solver_adjoint_linear.cpp - -#}}} -#Hydrology sources {{{1 -hydrology_sources = ./modules/ModelProcessorx/Hydrology/UpdateElementsHydrology.cpp\ - ./modules/ModelProcessorx/Hydrology/CreateNodesHydrology.cpp\ - ./modules/ModelProcessorx/Hydrology/CreateConstraintsHydrology.cpp\ - ./modules/ModelProcessorx/Hydrology/CreateLoadsHydrology.cpp - -hydrology_psources = ./solutions/hydrology_core.cpp\ - ./solutions/hydrology_core_step.cpp -#}}} -#Diagnostic sources {{{1 -diagnostic_sources = ./modules/ModelProcessorx/DiagnosticHoriz/UpdateElementsDiagnosticHoriz.cpp\ - ./modules/ModelProcessorx/DiagnosticHoriz/CreateNodesDiagnosticHoriz.cpp \ - ./modules/ModelProcessorx/DiagnosticHoriz/CreateConstraintsDiagnosticHoriz.cpp \ - ./modules/ModelProcessorx/DiagnosticHoriz/CreateLoadsDiagnosticHoriz.cpp\ - ./modules/ModelProcessorx/DiagnosticVert/UpdateElementsDiagnosticVert.cpp\ - ./modules/ModelProcessorx/DiagnosticVert/CreateNodesDiagnosticVert.cpp \ - ./modules/ModelProcessorx/DiagnosticVert/CreateConstraintsDiagnosticVert.cpp \ - ./modules/ModelProcessorx/DiagnosticVert/CreateLoadsDiagnosticVert.cpp\ - ./modules/ModelProcessorx/DiagnosticHutter/UpdateElementsDiagnosticHutter.cpp\ - ./modules/ModelProcessorx/DiagnosticHutter/CreateNodesDiagnosticHutter.cpp \ - ./modules/ModelProcessorx/DiagnosticHutter/CreateConstraintsDiagnosticHutter.cpp \ - ./modules/ModelProcessorx/DiagnosticHutter/CreateLoadsDiagnosticHutter.cpp \ - ./shared/Elements/CoordinateSystemTransform.cpp\ - ./shared/Elements/TransformLoadVectorCoord.cpp \ - ./shared/Elements/TransformStiffnessMatrixCoord.cpp \ - ./shared/Elements/TransformInvStiffnessMatrixCoord.cpp \ - ./shared/Elements/TransformSolutionCoord.cpp -diagnostic_psources =./solutions/diagnostic_core.cpp\ - ./solvers/solver_stokescoupling_nonlinear.cpp -#}}} -#Balanced sources {{{1 -balanced_sources = ./modules/ModelProcessorx/Balancethickness/UpdateElementsBalancethickness.cpp\ - ./modules/ModelProcessorx/Balancethickness/CreateNodesBalancethickness.cpp\ - ./modules/ModelProcessorx/Balancethickness/CreateConstraintsBalancethickness.cpp\ - ./modules/ModelProcessorx/Balancethickness/CreateLoadsBalancethickness.cpp -balanced_psources = ./solutions/balancethickness_core.cpp -#}}} -#Responses sources {{{1 -responses_sources = ./modules/MinVelx/MinVelx.h\ - ./modules/MinVelx/MinVelx.cpp\ - ./modules/MaxVelx/MaxVelx.h\ - ./modules/MaxVelx/MaxVelx.cpp\ - ./modules/MaxAbsVxx/MaxAbsVxx.h\ - ./modules/MaxAbsVxx/MaxAbsVxx.cpp\ - ./modules/MaxAbsVyx/MaxAbsVyx.h\ - ./modules/MaxAbsVyx/MaxAbsVyx.cpp\ - ./modules/MaxAbsVzx/MaxAbsVzx.h\ - ./modules/MaxAbsVzx/MaxAbsVzx.cpp\ - ./modules/MaxVxx/MaxVxx.h\ - ./modules/MaxVxx/MaxVxx.cpp\ - ./modules/MaxVyx/MaxVyx.h\ - ./modules/MaxVyx/MaxVyx.cpp\ - ./modules/MaxVzx/MaxVzx.h\ - ./modules/MaxVzx/MaxVzx.cpp\ - ./modules/MinVxx/MinVxx.h\ - ./modules/MinVxx/MinVxx.cpp\ - ./modules/MinVyx/MinVyx.h\ - ./modules/MinVyx/MinVyx.cpp\ - ./modules/MinVzx/MinVzx.h\ - ./modules/MinVzx/MinVzx.cpp\ - ./modules/IceVolumex/IceVolumex.h\ - ./modules/IceVolumex/IceVolumex.cpp\ - ./modules/ElementResponsex/ElementResponsex.h\ - ./modules/ElementResponsex/ElementResponsex.cpp\ - ./modules/MassFluxx/MassFluxx.cpp\ - ./modules/MassFluxx/MassFluxx.h -#}}} -#Slope sources {{{1 -slope_sources = ./modules/ModelProcessorx/BedSlope/UpdateElementsBedSlope.cpp\ - ./modules/ModelProcessorx/BedSlope/CreateNodesBedSlope.cpp \ - ./modules/ModelProcessorx/BedSlope/CreateConstraintsBedSlope.cpp\ - ./modules/ModelProcessorx/BedSlope/CreateLoadsBedSlope.cpp\ - ./modules/ModelProcessorx/SurfaceSlope/UpdateElementsSurfaceSlope.cpp\ - ./modules/ModelProcessorx/SurfaceSlope/CreateNodesSurfaceSlope.cpp \ - ./modules/ModelProcessorx/SurfaceSlope/CreateConstraintsSurfaceSlope.cpp\ - ./modules/ModelProcessorx/SurfaceSlope/CreateLoadsSurfaceSlope.cpp -slope_psources = ./solutions/surfaceslope_core.cpp\ - ./solutions/bedslope_core.cpp -#}}} -#Groundingline sources {{{1 -groundingline_sources= ./modules/GroundinglineMigrationx/GroundinglineMigrationx.cpp\ - ./modules/GroundinglineMigrationx/GroundinglineMigrationx.h -#}}} -#Rifts sources {{{1 -rifts_sources = ./objects/Loads/Riftfront.cpp\ - ./objects/Loads/Riftfront.h\ - ./modules/ConstraintsStatex/RiftConstraintsState.cpp -#}}} -#3D sources {{{1 -threed_sources = ./objects/Gauss/GaussPenta.h\ - ./objects/Gauss/GaussPenta.cpp\ - ./objects/ElementResults/PentaP1ElementResult.h\ - ./objects/ElementResults/PentaP1ElementResult.cpp\ - ./objects/Inputs/PentaP1Input.h\ - ./objects/Inputs/PentaP1Input.cpp\ - ./objects/Elements/Penta.h\ - ./objects/Elements/Penta.cpp\ - ./objects/Elements/PentaHook.h\ - ./objects/Elements/PentaHook.cpp\ - ./objects/Elements/PentaRef.h\ - ./objects/Elements/PentaRef.cpp -#}}} -#Bamg sources {{{1 -bamg_sources = ./objects/Bamg/BamgGeom.h\ - ./objects/Bamg/BamgGeom.cpp\ - ./objects/Bamg/BamgMesh.h\ - ./objects/Bamg/BamgMesh.cpp\ - ./objects/Bamg/BamgOpts.h\ - ./objects/Bamg/BamgOpts.cpp\ - ./objects/Bamg/CrackedEdge.h\ - ./objects/Bamg/CrackedEdge.cpp\ - ./objects/Bamg/Curve.h\ - ./objects/Bamg/Curve.cpp\ - ./objects/Bamg/Direction.h\ - ./objects/Bamg/Direction.cpp\ - ./objects/Bamg/DoubleAndInt.h\ - ./objects/Bamg/Edge.h\ - ./objects/Bamg/Edge.cpp\ - ./objects/Bamg/GeomEdge.h\ - ./objects/Bamg/GeomEdge.cpp\ - ./objects/Bamg/GeomSubDomain.h\ - ./objects/Bamg/GeomSubDomain.cpp\ - ./objects/Bamg/GeomVertex.h\ - ./objects/Bamg/GeomVertex.cpp\ - ./objects/Bamg/Geometry.cpp\ - ./objects/Bamg/Geometry.h\ - ./objects/Bamg/ListofIntersectionTriangles.cpp\ - ./objects/Bamg/ListofIntersectionTriangles.h\ - ./objects/Bamg/EigenMetric.cpp\ - ./objects/Bamg/Metric.cpp\ - ./objects/Bamg/Metric.h\ - ./objects/Bamg/QuadTree.cpp\ - ./objects/Bamg/QuadTree.h\ - ./objects/Bamg/R2.h\ - ./objects/Bamg/SetOfE4.cpp\ - ./objects/Bamg/SetOfE4.h\ - ./objects/Bamg/SubDomain.h\ - ./objects/Bamg/SubDomain.cpp\ - ./objects/Bamg/AdjacentTriangle.h\ - ./objects/Bamg/AdjacentTriangle.cpp\ - ./objects/Bamg/Triangle.cpp\ - ./objects/Bamg/Triangle.h\ - ./objects/Bamg/BamgVertex.cpp\ - ./objects/Bamg/BamgVertex.h\ - ./objects/Bamg/VertexOnEdge.h\ - ./objects/Bamg/VertexOnEdge.cpp\ - ./objects/Bamg/VertexOnGeom.h\ - ./objects/Bamg/VertexOnGeom.cpp\ - ./objects/Bamg/VertexOnVertex.h\ - ./objects/Bamg/VertexOnVertex.cpp\ - ./objects/Bamg/Mesh.cpp\ - ./objects/Bamg/Mesh.h\ - ./shared/Bamg/Abs.h \ - ./shared/Bamg/BigPrimeNumber.h\ - ./shared/Bamg/BigPrimeNumber.cpp\ - ./shared/Bamg/BinaryRand.h \ - ./shared/Bamg/det.h \ - ./shared/Bamg/Exchange.h \ - ./shared/Bamg/extrema.h \ - ./shared/Bamg/HeapSort.h \ - ./shared/Bamg/OppositeAngle.h \ - ./modules/Bamgx/Bamgx.cpp\ - ./modules/Bamgx/Bamgx.h\ - ./modules/BamgConvertMeshx/BamgConvertMeshx.cpp\ - ./modules/BamgConvertMeshx/BamgConvertMeshx.h\ - ./modules/BamgTriangulatex/BamgTriangulatex.cpp\ - ./modules/BamgTriangulatex/BamgTriangulatex.h -#}}} -#Kml sources {{{1 -kml_sources = ./modules/Exp2Kmlx/Exp2Kmlx.h\ - ./modules/Exp2Kmlx/Exp2Kmlx.cpp\ - ./modules/Kml2Expx/Kml2Expx.h\ - ./modules/Kml2Expx/Kml2Expx.cpp\ - ./modules/Shp2Kmlx/Shp2Kmlx.h\ - ./modules/Shp2Kmlx/Shp2Kmlx.cpp\ - ./modules/KMLFileReadx/KMLFileReadx.h\ - ./modules/KMLFileReadx/KMLFileReadx.cpp\ - ./modules/KMLMeshWritex/KMLMeshWritex.h\ - ./modules/KMLMeshWritex/KMLMeshWritex.cpp\ - ./modules/KMLOverlayx/KMLOverlayx.h\ - ./modules/KMLOverlayx/KMLOverlayx.cpp\ - ./objects/KML/KML_Attribute.cpp\ - ./objects/KML/KML_Attribute.h\ - ./objects/KML/KML_Comment.cpp\ - ./objects/KML/KML_Comment.h\ - ./objects/KML/KML_ColorStyle.cpp\ - ./objects/KML/KML_ColorStyle.h\ - ./objects/KML/KML_Container.cpp\ - ./objects/KML/KML_Container.h\ - ./objects/KML/KML_Document.cpp\ - ./objects/KML/KML_Document.h\ - ./objects/KML/KML_Feature.cpp\ - ./objects/KML/KML_Feature.h\ - ./objects/KML/KML_File.cpp\ - ./objects/KML/KML_File.h\ - ./objects/KML/KML_Folder.cpp\ - ./objects/KML/KML_Folder.h\ - ./objects/KML/KML_Geometry.cpp\ - ./objects/KML/KML_Geometry.h\ - ./objects/KML/KML_GroundOverlay.cpp\ - ./objects/KML/KML_GroundOverlay.h\ - ./objects/KML/KML_Icon.cpp\ - ./objects/KML/KML_Icon.h\ - ./objects/KML/KML_LatLonBox.cpp\ - ./objects/KML/KML_LatLonBox.h\ - ./objects/KML/KML_LinearRing.cpp\ - ./objects/KML/KML_LinearRing.h\ - ./objects/KML/KML_LineString.cpp\ - ./objects/KML/KML_LineString.h\ - ./objects/KML/KML_LineStyle.cpp\ - ./objects/KML/KML_LineStyle.h\ - ./objects/KML/KML_MultiGeometry.cpp\ - ./objects/KML/KML_MultiGeometry.h\ - ./objects/KML/KML_Object.cpp\ - ./objects/KML/KML_Object.h\ - ./objects/KML/KML_Overlay.cpp\ - ./objects/KML/KML_Overlay.h\ - ./objects/KML/KML_Point.cpp\ - ./objects/KML/KML_Point.h\ - ./objects/KML/KML_Placemark.cpp\ - ./objects/KML/KML_Placemark.h\ - ./objects/KML/KML_Polygon.cpp\ - ./objects/KML/KML_Polygon.h\ - ./objects/KML/KML_PolyStyle.cpp\ - ./objects/KML/KML_PolyStyle.h\ - ./objects/KML/KML_Style.cpp\ - ./objects/KML/KML_Style.h\ - ./objects/KML/KML_StyleSelector.cpp\ - ./objects/KML/KML_StyleSelector.h\ - ./objects/KML/KML_SubStyle.cpp\ - ./objects/KML/KML_SubStyle.h\ - ./objects/KML/KML_Unknown.cpp\ - ./objects/KML/KML_Unknown.h\ - ./objects/KML/KMLFileReadUtils.cpp\ - ./objects/KML/KMLFileReadUtils.h -#}}} -#Matlab sources {{{1 -matlab_sources= ./shared/Matlab/matlabshared.h\ - ./shared/Matlab/ModuleBoot.cpp\ - ./shared/Matlab/ModuleEnd.cpp\ - ./shared/Matlab/mxGetAssignedField.cpp\ - ./shared/Matlab/mxGetField.cpp\ - ./shared/Matlab/CheckNumMatlabArguments.cpp\ - ./toolkits/matlab/matlabincludes.h\ - ./toolkits/matlab/MatlabNArrayToNArray.cpp\ - ./io/Matlab/matlabio.h\ - ./io/Matlab/WriteMatlabData.cpp\ - ./io/Matlab/FetchMatlabData.cpp\ - ./io/Matlab/OptionParse.cpp -#}}} -#Serialsources {{{1 -serial_sources= ./objects/Options/Option.cpp\ - ./objects/Options/Option.h\ - ./objects/Options/OptionDouble.cpp\ - ./objects/Options/OptionDouble.h\ - ./objects/Options/OptionLogical.cpp\ - ./objects/Options/OptionLogical.h\ - ./objects/Options/OptionChar.cpp\ - ./objects/Options/OptionChar.h\ - ./objects/Options/OptionStruct.cpp\ - ./objects/Options/OptionStruct.h\ - ./objects/Options/OptionCell.cpp\ - ./objects/Options/OptionCell.h\ - ./objects/Options/OptionUtilities.cpp\ - ./objects/Options/OptionUtilities.h\ - ./shared/Threads/issm_threads.h\ - ./shared/Threads/LaunchThread.cpp\ - ./shared/Threads/PartitionRange.cpp\ - ./shared/Exp/exp.h\ - ./shared/Exp/IsInPoly.cpp\ - ./shared/Exp/IsInPolySerial.cpp\ - ./shared/Exp/DomainOutlineRead.cpp\ - ./shared/Exp/DomainOutlineWrite.cpp\ - ./shared/TriMesh/trimesh.h\ - ./shared/TriMesh/AssociateSegmentToElement.cpp\ - ./shared/TriMesh/GridInsideHole.cpp\ - ./shared/TriMesh/OrderSegments.cpp\ - ./shared/TriMesh/SplitMeshForRifts.cpp\ - ./shared/TriMesh/TriMeshUtils.cpp\ - ./modules/AddExternalResultx/AddExternalResultx.h\ - ./modules/AddExternalResultx/AddExternalResultx.cpp\ - ./modules/Chacox/Chacox.h\ - ./modules/Chacox/Chacox.cpp\ - ./modules/Chacox/input_parse.cpp\ - ./modules/Chacox/chaco_seconds.cpp\ - ./modules/Chacox/user_params.cpp\ - ./modules/Dakotax/SpawnCoreSerial.cpp\ - ./modules/TriaSearchx/TriaSearchx.h\ - ./modules/TriaSearchx/TriaSearchx.cpp\ - ./modules/PointCloudFindNeighborsx/PointCloudFindNeighborsx.h\ - ./modules/PointCloudFindNeighborsx/PointCloudFindNeighborsx.cpp\ - ./modules/PointCloudFindNeighborsx/PointCloudFindNeighborsxt.cpp\ - ./modules/Xy2llx/Xy2llx.h\ - ./modules/Xy2llx/Xy2llx.cpp\ - ./modules/Ll2xyx/Ll2xyx.h\ - ./modules/Ll2xyx/Ll2xyx.cpp\ - ./modules/InterpFromGridToMeshx/InterpFromGridToMeshx.cpp\ - ./modules/InterpFromGridToMeshx/InterpFromGridToMeshx.h\ - ./modules/InterpFromMesh2dx/InterpFromMesh2dx.cpp\ - ./modules/InterpFromMesh2dx/InterpFromMesh2dxt.cpp\ - ./modules/InterpFromMesh2dx/InterpFromMesh2dx.h\ - ./modules/InterpFromMeshToMesh2dx/InterpFromMeshToMesh2dx.cpp\ - ./modules/InterpFromMeshToMesh2dx/InterpFromMeshToMesh2dx.h\ - ./modules/InterpFromMeshToMesh3dx/InterpFromMeshToMesh3dx.cpp\ - ./modules/InterpFromMeshToMesh3dx/InterpFromMeshToMesh3dx.h\ - ./modules/InterpFromMeshToGridx/InterpFromMeshToGridx.cpp\ - ./modules/InterpFromMeshToGridx/InterpFromMeshToGridx.h\ - ./modules/HoleFillerx/HoleFillerx.cpp\ - ./modules/HoleFillerx/HoleFillerx.h\ - ./modules/AverageFilterx/AverageFilterx.cpp\ - ./modules/AverageFilterx/AverageFilterx.h\ - ./modules/MeshProfileIntersectionx/MeshProfileIntersectionx.cpp\ - ./modules/MeshProfileIntersectionx/MeshProfileIntersectionx.h\ - ./modules/MeshProfileIntersectionx/MeshSegmentsIntersection.cpp\ - ./modules/MeshProfileIntersectionx/ElementSegmentsIntersection.cpp\ - ./modules/MeshProfileIntersectionx/ElementSegment.cpp\ - ./modules/MeshProfileIntersectionx/SegmentIntersect.cpp\ - ./modules/MeshProfileIntersectionx/NodeInElement.cpp\ - ./modules/ContourToMeshx/ContourToMeshx.cpp\ - ./modules/ContourToMeshx/ContourToMeshxt.cpp\ - ./modules/ContourToMeshx/ContourToMeshx.h\ - ./modules/ContourToNodesx/ContourToNodesx.cpp\ - ./modules/ContourToNodesx/ContourToNodesx.h\ - ./modules/Reducevectorgtosx/Reducevectorgtosx.cpp\ - ./modules/Reducevectorgtosx/Reducevectorgtosx.h\ - ./modules/NodeConnectivityx/NodeConnectivityx.cpp\ - ./modules/NodeConnectivityx/NodeConnectivityx.h\ - ./modules/ElementConnectivityx/ElementConnectivityx.cpp\ - ./modules/ElementConnectivityx/ElementConnectivityx.h\ - ./modules/Scotchx/Scotchx.cpp\ - ./modules/Scotchx/Scotchx.h\ - ./modules/PropagateFlagsFromConnectivityx/PropagateFlagsFromConnectivityx.cpp\ - ./modules/PropagateFlagsFromConnectivityx/PropagateFlagsFromConnectivityx.h -#}}} - -#ISSM sources are a combination of core sources and sources related to specific capabilities (which can -#be activated by autotools conditionals -#{{{1 - -#First the core -issm_sources = $(core_sources) -issm_psources = - -#Now the optional source -if DAKOTA -issm_sources += $(dakota_sources) -issm_psources += $(dakota_psources) -endif - -if TRANSIENT -issm_sources += $(transient_sources) -issm_psources += $(transient_psources) -endif - -if STEADYSTATE -issm_sources += $(steadystate_sources) -issm_psources += $(steadystate_psources) -endif - -if PROGNOSTIC -issm_sources += $(prognostic_sources) -issm_psources += $(prognostic_psources) -endif - -if THERMAL -issm_sources += $(thermal_sources) -issm_psources += $(thermal_psources) -endif - -if CONTROL -issm_sources += $(control_sources) -issm_psources += $(control_psources) -endif - -if HYDROLOGY -issm_sources += $(hydrology_sources) -issm_psources += $(hydrology_psources) -endif - -if DIAGNOSTIC -issm_sources += $(diagnostic_sources) -issm_psources += $(diagnostic_psources) -endif - -if BALANCED -issm_sources += $(balanced_sources) -issm_psources += $(balanced_psources) -endif - -if RESPONSES -issm_sources += $(responses_sources) -endif - -if SLOPE -issm_sources += $(slope_sources) -issm_psources += $(slope_psources) -endif - -if GROUNDINGLINE -issm_sources += $(groundingline_sources) -endif - -if RIFTS -issm_sources += $(rifts_sources) -endif - -if THREED -issm_sources += $(threed_sources) -endif -#}}} - -#ISSM serial library {{{1 -libISSM_a_SOURCES = $(issm_sources) -libISSM_a_SOURCES += $(serial_sources) -libISSM_a_SOURCES += $(bamg_sources) -libISSM_a_SOURCES += $(kml_sources) -libISSM_a_SOURCES += $(matlab_sources) - -libISSM_a_CXXFLAGS = -fPIC -DMATLAB -D_SERIAL_ -D_GNU_SOURCE -fno-omit-frame-pointer -pthread -D_CPP_ $(CXXFLAGS) $(CXXOPTFLAGS) -if LARGEARRAYS -libISSM_a_CXXFLAGS += -D__GCC4BUILD__ -else -libISSM_a_CXXFLAGS += -DMX_COMPAT_32 -endif -#}}} -#ISSM parallel library {{{1 -libpISSM_a_SOURCES = $(issm_sources) -libpISSM_a_SOURCES += $(issm_psources) -libpISSM_a_CXXFLAGS = -fPIC -D_PARALLEL_ -D_C_ $(CXXFLAGS) $(CXXOPTFLAGS) -#}}} -#Overload library, to overload any non-standard symbols. {{{1 -libOverload_a_SOURCES = ./shared/String/stricmp.c -libOverload_a_CFLAGS = -fPIC -D_PARALLEL_ -D_C_ $(COPTFLAGS) $(CFLAGS) -#}}} - -#Executable {{{1 -if NOPARALLEL -bin_PROGRAMS = -else -bin_PROGRAMS = issm -endif - -#Standard libraries -LDADD = ./libpISSM.a ./libOverload.a - -#External packages -LDADD += $(PETSCLIB) $(TAOLIB) $(FLIBS) $(PLAPACKLIB) $(MUMPSLIB) $(SCALAPACKLIB) $(BLACSLIB) $(HYPRELIB) $(MLLIB) $(DAKOTALIB) $(METISLIB) $(CHACOLIB) $(SCOTCHLIB) $(BLASLAPACKLIB) $(MKLLIB) $(MPILIB) $(MATHLIB) $(FORTRANLIB) $(GRAPHICSLIB) $(MULTITHREADINGLIB) $(OSLIBS) - -issm_SOURCES = solutions/issm.cpp -issm_CXXFLAGS= -fPIC -D_PARALLEL_ $(CXXFLAGS) $(CXXOPTFLAGS) $(COPTFLAGS) -#}}} - -#Automatic differentiation: append this fold to the end of the src/c/Makefile.am to get this Makefile.am {{{ -if ADIC2 -lib_LIBRARIES += libAD.a libpISSMRose.a - -#ADIC2 library, for automatic differentiation -#libAD_a_SOURCES = ./mini1.ad.c -libAD_a_SOURCES = -libAD_a_CFLAGS = -fPIC -D_PARALLEL_ -D_C_ $(COPTFLAGS) - - - -#test rose preprocessing -%.r2cpp.cpp : %.cpp - testTranslator -rose:o $@ -rose:skipfinalCompileStep -DHAVE_CONFIG_H -D_PARALLEL_ -D_C_ -I. -I../.. $(INCLUDES) $< -libpISSMRose_a_SOURCES = $(libpISSM_a_SOURCES:.cpp=.r2cpp.cpp) -libpISSMRose_a_CXXFLAGS= -fPIC -D_PARALLEL_ -D_C_ $(CXXOPTFLAGS) - - - -#Automatic differentiation rules: -%.ad.c: %.c - adic2 -mforward $< --nary - - - -#Executable -bin_PROGRAMS += issmRose.exe -issmRose_exe_LDADD = ./libpISSMRose.a $(LDADD) -issmRose_exe_SOURCES = solutions/issm.cpp -issmRose_exe_CXXFLAGS= -fPIC -D_PARALLEL_ $(CXXOPTFLAGS) $(COPTFLAGS) -LDADD += $(ADIC2LIB) - -endif #}}} Index: sm/trunk-jpl/src/ad/eraselinks.sh =================================================================== --- /issm/trunk-jpl/src/ad/eraselinks.sh (revision 11664) +++ (revision ) @@ -1,14 +1,0 @@ -#/bin/bash -#This script soflinks all files in trunk/src/c/ directory necessary for compilation -#of trunk/src/ad/ -rm include -rm objects -rm Container -rm shared -rm toolkits -rm io -rm EnumDefinitions -rm modules -rm solutions -rm solvers -rm issm.h Index: sm/trunk-jpl/src/ad/softlink.sh =================================================================== --- /issm/trunk-jpl/src/ad/softlink.sh (revision 11664) +++ (revision ) @@ -1,14 +1,0 @@ -#/bin/bash -#This script soflinks all files in trunk/src/c/ directory necessary for compilation -#of trunk/src/ad/ -ln -s ../c/include -ln -s ../c/objects -ln -s ../c/Container -ln -s ../c/shared -ln -s ../c/toolkits -ln -s ../c/io -ln -s ../c/EnumDefinitions -ln -s ../c/modules -ln -s ../c/solutions -ln -s ../c/solvers -ln -s ../c/issm.h Index: /issm/trunk-jpl/src/c/Makefile.am =================================================================== --- /issm/trunk-jpl/src/c/Makefile.am (revision 11664) +++ /issm/trunk-jpl/src/c/Makefile.am (revision 11665) @@ -930,2 +930,35 @@ issm_CXXFLAGS= -fPIC -D_PARALLEL_ $(CXXFLAGS) $(CXXOPTFLAGS) $(COPTFLAGS) #}}} +#Automatic differentiation: append this fold to the end of the src/c/Makefile.am to get this Makefile.am {{{ +if ADIC2 +lib_LIBRARIES += libAD.a libpISSMRose.a + +#ADIC2 library, for automatic differentiation +#libAD_a_SOURCES = ./mini1.ad.c +libAD_a_SOURCES = +libAD_a_CFLAGS = -fPIC -D_PARALLEL_ -D_C_ $(COPTFLAGS) + + + +#test rose preprocessing +%.r2cpp.cpp : %.cpp + testTranslator -rose:o $@ -rose:skipfinalCompileStep -DHAVE_CONFIG_H -D_PARALLEL_ -D_C_ -I. -I../.. $(INCLUDES) $< +libpISSMRose_a_SOURCES = $(libpISSM_a_SOURCES:.cpp=.r2cpp.cpp) +libpISSMRose_a_CXXFLAGS= -fPIC -D_PARALLEL_ -D_C_ $(CXXOPTFLAGS) + + + +#Automatic differentiation rules: +%.ad.c: %.c + adic2 -mforward $< --nary + + + +#Executable +bin_PROGRAMS += issmRose.exe +issmRose_exe_LDADD = ./libpISSMRose.a $(LDADD) +issmRose_exe_SOURCES = solutions/issm.cpp +issmRose_exe_CXXFLAGS= -fPIC -D_PARALLEL_ $(CXXOPTFLAGS) $(COPTFLAGS) +LDADD += $(ADIC2LIB) + +endif #}}}