Index: sm/trunk-jpl/src/m/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,530 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-SOURCES =
-DIST_SOURCES =
-RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \
-	html-recursive info-recursive install-data-recursive \
-	install-dvi-recursive install-exec-recursive \
-	install-html-recursive install-info-recursive \
-	install-pdf-recursive install-ps-recursive install-recursive \
-	installcheck-recursive installdirs-recursive pdf-recursive \
-	ps-recursive uninstall-recursive
-RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive	\
-  distclean-recursive maintainer-clean-recursive
-ETAGS = etags
-CTAGS = ctags
-DIST_SUBDIRS = $(SUBDIRS)
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../
-top_builddir = ../..
-top_srcdir = ../..
-SUBDIRS = classes enum kml model planet qmu shared solutions solvers utils
-all: all-recursive
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-# This directory's subdirectories are mostly independent; you can cd
-# into them and run `make' without going through this Makefile.
-# To change the values of `make' variables: instead of editing Makefiles,
-# (1) if the variable is set in `config.status', edit `config.status'
-#     (which will cause the Makefiles to be regenerated when you run `make');
-# (2) otherwise, pass the desired values on the `make' command line.
-$(RECURSIVE_TARGETS):
-	@failcom='exit 1'; \
-	for f in x $$MAKEFLAGS; do \
-	  case $$f in \
-	    *=* | --[!k]*);; \
-	    *k*) failcom='fail=yes';; \
-	  esac; \
-	done; \
-	dot_seen=no; \
-	target=`echo $@ | sed s/-recursive//`; \
-	list='$(SUBDIRS)'; for subdir in $$list; do \
-	  echo "Making $$target in $$subdir"; \
-	  if test "$$subdir" = "."; then \
-	    dot_seen=yes; \
-	    local_target="$$target-am"; \
-	  else \
-	    local_target="$$target"; \
-	  fi; \
-	  (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
-	  || eval $$failcom; \
-	done; \
-	if test "$$dot_seen" = "no"; then \
-	  $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \
-	fi; test -z "$$fail"
-
-$(RECURSIVE_CLEAN_TARGETS):
-	@failcom='exit 1'; \
-	for f in x $$MAKEFLAGS; do \
-	  case $$f in \
-	    *=* | --[!k]*);; \
-	    *k*) failcom='fail=yes';; \
-	  esac; \
-	done; \
-	dot_seen=no; \
-	case "$@" in \
-	  distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \
-	  *) list='$(SUBDIRS)' ;; \
-	esac; \
-	rev=''; for subdir in $$list; do \
-	  if test "$$subdir" = "."; then :; else \
-	    rev="$$subdir $$rev"; \
-	  fi; \
-	done; \
-	rev="$$rev ."; \
-	target=`echo $@ | sed s/-recursive//`; \
-	for subdir in $$rev; do \
-	  echo "Making $$target in $$subdir"; \
-	  if test "$$subdir" = "."; then \
-	    local_target="$$target-am"; \
-	  else \
-	    local_target="$$target"; \
-	  fi; \
-	  (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
-	  || eval $$failcom; \
-	done && test -z "$$fail"
-tags-recursive:
-	list='$(SUBDIRS)'; for subdir in $$list; do \
-	  test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \
-	done
-ctags-recursive:
-	list='$(SUBDIRS)'; for subdir in $$list; do \
-	  test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \
-	done
-
-ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
-	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
-	unique=`for i in $$list; do \
-	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
-	  done | \
-	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
-	      END { if (nonempty) { for (i in files) print i; }; }'`; \
-	mkid -fID $$unique
-tags: TAGS
-
-TAGS: tags-recursive $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
-		$(TAGS_FILES) $(LISP)
-	tags=; \
-	here=`pwd`; \
-	if ($(ETAGS) --etags-include --version) >/dev/null 2>&1; then \
-	  include_option=--etags-include; \
-	  empty_fix=.; \
-	else \
-	  include_option=--include; \
-	  empty_fix=; \
-	fi; \
-	list='$(SUBDIRS)'; for subdir in $$list; do \
-	  if test "$$subdir" = .; then :; else \
-	    test ! -f $$subdir/TAGS || \
-	      tags="$$tags $$include_option=$$here/$$subdir/TAGS"; \
-	  fi; \
-	done; \
-	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
-	unique=`for i in $$list; do \
-	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
-	  done | \
-	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
-	      END { if (nonempty) { for (i in files) print i; }; }'`; \
-	if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
-	  test -n "$$unique" || unique=$$empty_fix; \
-	  $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
-	    $$tags $$unique; \
-	fi
-ctags: CTAGS
-CTAGS: ctags-recursive $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
-		$(TAGS_FILES) $(LISP)
-	tags=; \
-	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
-	unique=`for i in $$list; do \
-	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
-	  done | \
-	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
-	      END { if (nonempty) { for (i in files) print i; }; }'`; \
-	test -z "$(CTAGS_ARGS)$$tags$$unique" \
-	  || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
-	     $$tags $$unique
-
-GTAGS:
-	here=`$(am__cd) $(top_builddir) && pwd` \
-	  && cd $(top_srcdir) \
-	  && gtags -i $(GTAGS_ARGS) $$here
-
-distclean-tags:
-	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-	list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
-	  if test "$$subdir" = .; then :; else \
-	    test -d "$(distdir)/$$subdir" \
-	    || $(MKDIR_P) "$(distdir)/$$subdir" \
-	    || exit 1; \
-	    distdir=`$(am__cd) $(distdir) && pwd`; \
-	    top_distdir=`$(am__cd) $(top_distdir) && pwd`; \
-	    (cd $$subdir && \
-	      $(MAKE) $(AM_MAKEFLAGS) \
-	        top_distdir="$$top_distdir" \
-	        distdir="$$distdir/$$subdir" \
-		am__remove_distdir=: \
-		am__skip_length_check=: \
-	        distdir) \
-	      || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-recursive
-all-am: Makefile
-installdirs: installdirs-recursive
-installdirs-am:
-install: install-recursive
-install-exec: install-exec-recursive
-install-data: install-data-recursive
-uninstall: uninstall-recursive
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-recursive
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-recursive
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-recursive
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic distclean-tags
-
-dvi: dvi-recursive
-
-dvi-am:
-
-html: html-recursive
-
-info: info-recursive
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-recursive
-
-install-exec-am:
-
-install-html: install-html-recursive
-
-install-info: install-info-recursive
-
-install-man:
-
-install-pdf: install-pdf-recursive
-
-install-ps: install-ps-recursive
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-recursive
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-recursive
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-recursive
-
-pdf-am:
-
-ps: ps-recursive
-
-ps-am:
-
-uninstall-am:
-
-.MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) install-am \
-	install-strip
-
-.PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \
-	all all-am check check-am clean clean-generic ctags \
-	ctags-recursive distclean distclean-generic distclean-tags \
-	distdir dvi dvi-am html html-am info info-am install \
-	install-am install-data install-data-am install-dvi \
-	install-dvi-am install-exec install-exec-am install-html \
-	install-html-am install-info install-info-am install-man \
-	install-pdf install-pdf-am install-ps install-ps-am \
-	install-strip installcheck installcheck-am installdirs \
-	installdirs-am maintainer-clean maintainer-clean-generic \
-	mostlyclean mostlyclean-generic pdf pdf-am ps ps-am tags \
-	tags-recursive uninstall uninstall-am
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/classes/@modellist/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/classes/@modellist/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,404 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/classes/@modellist/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/classes/@modellist
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-SOURCES =
-DIST_SOURCES =
-am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
-am__vpath_adj = case $$p in \
-    $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
-    *) f=$$p;; \
-  esac;
-am__strip_dir = `echo $$p | sed -e 's|^.*/||'`;
-am__installdirs = "$(DESTDIR)$(classesdir)"
-classesDATA_INSTALL = $(INSTALL_DATA)
-DATA = $(classes_DATA)
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/classes/@modellist
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/classes/@modellist
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-classesdir = $(bindir)/@modellist
-classes_DATA = *.m
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/classes/@modellist/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/classes/@modellist/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-classesDATA: $(classes_DATA)
-	@$(NORMAL_INSTALL)
-	test -z "$(classesdir)" || $(MKDIR_P) "$(DESTDIR)$(classesdir)"
-	@list='$(classes_DATA)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  f=$(am__strip_dir) \
-	  echo " $(classesDATA_INSTALL) '$$d$$p' '$(DESTDIR)$(classesdir)/$$f'"; \
-	  $(classesDATA_INSTALL) "$$d$$p" "$(DESTDIR)$(classesdir)/$$f"; \
-	done
-
-uninstall-classesDATA:
-	@$(NORMAL_UNINSTALL)
-	@list='$(classes_DATA)'; for p in $$list; do \
-	  f=$(am__strip_dir) \
-	  echo " rm -f '$(DESTDIR)$(classesdir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(classesdir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(DATA)
-installdirs:
-	for dir in "$(DESTDIR)$(classesdir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am: install-classesDATA
-
-install-dvi: install-dvi-am
-
-install-exec-am:
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-classesDATA
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-classesDATA install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-classesDATA
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/classes/@pairoptions/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/classes/@pairoptions/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,404 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/classes/@pairoptions/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/classes/@pairoptions
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-SOURCES =
-DIST_SOURCES =
-am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
-am__vpath_adj = case $$p in \
-    $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
-    *) f=$$p;; \
-  esac;
-am__strip_dir = `echo $$p | sed -e 's|^.*/||'`;
-am__installdirs = "$(DESTDIR)$(classesdir)"
-classesDATA_INSTALL = $(INSTALL_DATA)
-DATA = $(classes_DATA)
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/classes/@pairoptions
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/classes/@pairoptions
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-classesdir = $(bindir)/@pairoptions
-classes_DATA = *.m
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/classes/@pairoptions/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/classes/@pairoptions/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-classesDATA: $(classes_DATA)
-	@$(NORMAL_INSTALL)
-	test -z "$(classesdir)" || $(MKDIR_P) "$(DESTDIR)$(classesdir)"
-	@list='$(classes_DATA)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  f=$(am__strip_dir) \
-	  echo " $(classesDATA_INSTALL) '$$d$$p' '$(DESTDIR)$(classesdir)/$$f'"; \
-	  $(classesDATA_INSTALL) "$$d$$p" "$(DESTDIR)$(classesdir)/$$f"; \
-	done
-
-uninstall-classesDATA:
-	@$(NORMAL_UNINSTALL)
-	@list='$(classes_DATA)'; for p in $$list; do \
-	  f=$(am__strip_dir) \
-	  echo " rm -f '$(DESTDIR)$(classesdir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(classesdir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(DATA)
-installdirs:
-	for dir in "$(DESTDIR)$(classesdir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am: install-classesDATA
-
-install-dvi: install-dvi-am
-
-install-exec-am:
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-classesDATA
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-classesDATA install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-classesDATA
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/classes/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/classes/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,558 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/classes/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/classes
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \
-	html-recursive info-recursive install-data-recursive \
-	install-dvi-recursive install-exec-recursive \
-	install-html-recursive install-info-recursive \
-	install-pdf-recursive install-ps-recursive install-recursive \
-	installcheck-recursive installdirs-recursive pdf-recursive \
-	ps-recursive uninstall-recursive
-RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive	\
-  distclean-recursive maintainer-clean-recursive
-ETAGS = etags
-CTAGS = ctags
-DIST_SUBDIRS = $(SUBDIRS)
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/classes
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/classes
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../
-top_builddir = ../../..
-top_srcdir = ../../..
-SUBDIRS = @pairoptions @modellist
-bin_SCRIPTS = *.m 
-all: all-recursive
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/classes/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/classes/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-
-# This directory's subdirectories are mostly independent; you can cd
-# into them and run `make' without going through this Makefile.
-# To change the values of `make' variables: instead of editing Makefiles,
-# (1) if the variable is set in `config.status', edit `config.status'
-#     (which will cause the Makefiles to be regenerated when you run `make');
-# (2) otherwise, pass the desired values on the `make' command line.
-$(RECURSIVE_TARGETS):
-	@failcom='exit 1'; \
-	for f in x $$MAKEFLAGS; do \
-	  case $$f in \
-	    *=* | --[!k]*);; \
-	    *k*) failcom='fail=yes';; \
-	  esac; \
-	done; \
-	dot_seen=no; \
-	target=`echo $@ | sed s/-recursive//`; \
-	list='$(SUBDIRS)'; for subdir in $$list; do \
-	  echo "Making $$target in $$subdir"; \
-	  if test "$$subdir" = "."; then \
-	    dot_seen=yes; \
-	    local_target="$$target-am"; \
-	  else \
-	    local_target="$$target"; \
-	  fi; \
-	  (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
-	  || eval $$failcom; \
-	done; \
-	if test "$$dot_seen" = "no"; then \
-	  $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \
-	fi; test -z "$$fail"
-
-$(RECURSIVE_CLEAN_TARGETS):
-	@failcom='exit 1'; \
-	for f in x $$MAKEFLAGS; do \
-	  case $$f in \
-	    *=* | --[!k]*);; \
-	    *k*) failcom='fail=yes';; \
-	  esac; \
-	done; \
-	dot_seen=no; \
-	case "$@" in \
-	  distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \
-	  *) list='$(SUBDIRS)' ;; \
-	esac; \
-	rev=''; for subdir in $$list; do \
-	  if test "$$subdir" = "."; then :; else \
-	    rev="$$subdir $$rev"; \
-	  fi; \
-	done; \
-	rev="$$rev ."; \
-	target=`echo $@ | sed s/-recursive//`; \
-	for subdir in $$rev; do \
-	  echo "Making $$target in $$subdir"; \
-	  if test "$$subdir" = "."; then \
-	    local_target="$$target-am"; \
-	  else \
-	    local_target="$$target"; \
-	  fi; \
-	  (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
-	  || eval $$failcom; \
-	done && test -z "$$fail"
-tags-recursive:
-	list='$(SUBDIRS)'; for subdir in $$list; do \
-	  test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \
-	done
-ctags-recursive:
-	list='$(SUBDIRS)'; for subdir in $$list; do \
-	  test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \
-	done
-
-ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
-	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
-	unique=`for i in $$list; do \
-	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
-	  done | \
-	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
-	      END { if (nonempty) { for (i in files) print i; }; }'`; \
-	mkid -fID $$unique
-tags: TAGS
-
-TAGS: tags-recursive $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
-		$(TAGS_FILES) $(LISP)
-	tags=; \
-	here=`pwd`; \
-	if ($(ETAGS) --etags-include --version) >/dev/null 2>&1; then \
-	  include_option=--etags-include; \
-	  empty_fix=.; \
-	else \
-	  include_option=--include; \
-	  empty_fix=; \
-	fi; \
-	list='$(SUBDIRS)'; for subdir in $$list; do \
-	  if test "$$subdir" = .; then :; else \
-	    test ! -f $$subdir/TAGS || \
-	      tags="$$tags $$include_option=$$here/$$subdir/TAGS"; \
-	  fi; \
-	done; \
-	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
-	unique=`for i in $$list; do \
-	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
-	  done | \
-	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
-	      END { if (nonempty) { for (i in files) print i; }; }'`; \
-	if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
-	  test -n "$$unique" || unique=$$empty_fix; \
-	  $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
-	    $$tags $$unique; \
-	fi
-ctags: CTAGS
-CTAGS: ctags-recursive $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
-		$(TAGS_FILES) $(LISP)
-	tags=; \
-	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
-	unique=`for i in $$list; do \
-	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
-	  done | \
-	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
-	      END { if (nonempty) { for (i in files) print i; }; }'`; \
-	test -z "$(CTAGS_ARGS)$$tags$$unique" \
-	  || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
-	     $$tags $$unique
-
-GTAGS:
-	here=`$(am__cd) $(top_builddir) && pwd` \
-	  && cd $(top_srcdir) \
-	  && gtags -i $(GTAGS_ARGS) $$here
-
-distclean-tags:
-	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-	list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
-	  if test "$$subdir" = .; then :; else \
-	    test -d "$(distdir)/$$subdir" \
-	    || $(MKDIR_P) "$(distdir)/$$subdir" \
-	    || exit 1; \
-	    distdir=`$(am__cd) $(distdir) && pwd`; \
-	    top_distdir=`$(am__cd) $(top_distdir) && pwd`; \
-	    (cd $$subdir && \
-	      $(MAKE) $(AM_MAKEFLAGS) \
-	        top_distdir="$$top_distdir" \
-	        distdir="$$distdir/$$subdir" \
-		am__remove_distdir=: \
-		am__skip_length_check=: \
-	        distdir) \
-	      || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-recursive
-all-am: Makefile $(SCRIPTS)
-installdirs: installdirs-recursive
-installdirs-am:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-recursive
-install-exec: install-exec-recursive
-install-data: install-data-recursive
-uninstall: uninstall-recursive
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-recursive
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-recursive
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-recursive
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic distclean-tags
-
-dvi: dvi-recursive
-
-dvi-am:
-
-html: html-recursive
-
-info: info-recursive
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-recursive
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-recursive
-
-install-info: install-info-recursive
-
-install-man:
-
-install-pdf: install-pdf-recursive
-
-install-ps: install-ps-recursive
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-recursive
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-recursive
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-recursive
-
-pdf-am:
-
-ps: ps-recursive
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) install-am \
-	install-strip
-
-.PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \
-	all all-am check check-am clean clean-generic ctags \
-	ctags-recursive distclean distclean-generic distclean-tags \
-	distdir dvi dvi-am html html-am info info-am install \
-	install-am install-binSCRIPTS install-data install-data-am \
-	install-dvi install-dvi-am install-exec install-exec-am \
-	install-html install-html-am install-info install-info-am \
-	install-man install-pdf install-pdf-am install-ps \
-	install-ps-am install-strip installcheck installcheck-am \
-	installdirs installdirs-am maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am tags tags-recursive uninstall uninstall-am \
-	uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: /issm/trunk-jpl/src/m/classes/clusters/greenplanet.m
===================================================================
--- /issm/trunk-jpl/src/m/classes/clusters/greenplanet.m	(revision 11473)
+++ /issm/trunk-jpl/src/m/classes/clusters/greenplanet.m	(revision 11474)
@@ -95,5 +95,5 @@
 
 			 fprintf(fid,'cd %s/%s\n\n',cluster.executionpath,md.private.runtimename);
-			 fprintf(fid,'/sopt/mpi/mvapich-1.1/intel/bin/mpiexec -mpich-p4-no-shmem -np %i %s/issm.exe %s %s %s\n',cluster.np,cluster.codepath,EnumToString(solution),cluster.executionpath,modelname);
+			 fprintf(fid,'mpiexec -np %i %s/issm.exe %s %s %s\n',cluster.np,cluster.codepath,EnumToString(solution),cluster.executionpath,modelname);
 
 			 if ~md.settings.io_gather,
Index: sm/trunk-jpl/src/m/enum/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/enum/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/enum/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/enum
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/enum
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/enum
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../
-top_builddir = ../../..
-top_srcdir = ../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/enum/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/enum/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/kml/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/kml/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/kml/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/kml
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/kml
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/kml
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../
-top_builddir = ../../..
-top_srcdir = ../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/kml/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/kml/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/model/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/model/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/model/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/model
-DIST_COMMON = README $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/model
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/model
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../
-top_builddir = ../../..
-top_srcdir = ../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/model/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/model/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/planet/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/planet/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/planet/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/planet
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/planet
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/planet
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../
-top_builddir = ../../..
-top_srcdir = ../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/planet/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/planet/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/qmu/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/qmu/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/qmu/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/qmu
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/qmu
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/qmu
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../
-top_builddir = ../../..
-top_srcdir = ../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/qmu/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/qmu/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/shared/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/shared/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/shared/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/shared
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/shared
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/shared
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../
-top_builddir = ../../..
-top_srcdir = ../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/shared/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/shared/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/solutions/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/solutions/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/solutions/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/solutions
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/solutions
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/solutions
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../
-top_builddir = ../../..
-top_srcdir = ../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/solutions/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/solutions/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/solvers/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/solvers/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/solvers/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/solvers
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/solvers
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/solvers
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../
-top_builddir = ../../..
-top_srcdir = ../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/solvers/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/solvers/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/Analysis/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Analysis/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/Analysis/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/Analysis
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Analysis
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Analysis
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Analysis/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/Analysis/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/Array/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Array/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/Array/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/Array
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Array
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Array
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Array/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/Array/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/BC/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/BC/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/BC/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/BC
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/BC
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/BC
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/BC/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/BC/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/Basins/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Basins/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/Basins/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/Basins
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Basins
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Basins
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Basins/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/Basins/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/Cluster/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Cluster/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/Cluster/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/Cluster
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Cluster
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Cluster
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Cluster/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/Cluster/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/DataProcessing/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/DataProcessing/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/DataProcessing/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/DataProcessing
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/DataProcessing
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/DataProcessing
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/DataProcessing/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/DataProcessing/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/Ecco3/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Ecco3/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/Ecco3/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/Ecco3
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Ecco3
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Ecco3
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Ecco3/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/Ecco3/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/Exp/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Exp/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/Exp/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/Exp
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Exp
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Exp
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Exp/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/Exp/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/Geometry/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Geometry/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/Geometry/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/Geometry
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Geometry
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Geometry
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Geometry/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/Geometry/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/ImageProcessing/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/ImageProcessing/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/ImageProcessing/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/ImageProcessing
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/ImageProcessing
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/ImageProcessing
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/ImageProcessing/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/ImageProcessing/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/Interp/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Interp/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/Interp/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/Interp
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Interp
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Interp
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Interp/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/Interp/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/Kml/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Kml/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/Kml/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/Kml
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Kml
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Kml
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Kml/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/Kml/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/LatLong/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/LatLong/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/LatLong/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/LatLong
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/LatLong
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/LatLong
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/LatLong/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/LatLong/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,558 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \
-	html-recursive info-recursive install-data-recursive \
-	install-dvi-recursive install-exec-recursive \
-	install-html-recursive install-info-recursive \
-	install-pdf-recursive install-ps-recursive install-recursive \
-	installcheck-recursive installdirs-recursive pdf-recursive \
-	ps-recursive uninstall-recursive
-RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive	\
-  distclean-recursive maintainer-clean-recursive
-ETAGS = etags
-CTAGS = ctags
-DIST_SUBDIRS = $(SUBDIRS)
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../
-top_builddir = ../../..
-top_srcdir = ../../..
-SUBDIRS = Analysis Array BC Basins Cluster DataProcessing Ecco3 Exp Geometry ImageProcessing Interp Kml LatLong Math Meca Mesh Miscellaneous Model Numerics OS Plot Shell String consistency qmu
-bin_SCRIPTS = *.m 
-all: all-recursive
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-
-# This directory's subdirectories are mostly independent; you can cd
-# into them and run `make' without going through this Makefile.
-# To change the values of `make' variables: instead of editing Makefiles,
-# (1) if the variable is set in `config.status', edit `config.status'
-#     (which will cause the Makefiles to be regenerated when you run `make');
-# (2) otherwise, pass the desired values on the `make' command line.
-$(RECURSIVE_TARGETS):
-	@failcom='exit 1'; \
-	for f in x $$MAKEFLAGS; do \
-	  case $$f in \
-	    *=* | --[!k]*);; \
-	    *k*) failcom='fail=yes';; \
-	  esac; \
-	done; \
-	dot_seen=no; \
-	target=`echo $@ | sed s/-recursive//`; \
-	list='$(SUBDIRS)'; for subdir in $$list; do \
-	  echo "Making $$target in $$subdir"; \
-	  if test "$$subdir" = "."; then \
-	    dot_seen=yes; \
-	    local_target="$$target-am"; \
-	  else \
-	    local_target="$$target"; \
-	  fi; \
-	  (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
-	  || eval $$failcom; \
-	done; \
-	if test "$$dot_seen" = "no"; then \
-	  $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \
-	fi; test -z "$$fail"
-
-$(RECURSIVE_CLEAN_TARGETS):
-	@failcom='exit 1'; \
-	for f in x $$MAKEFLAGS; do \
-	  case $$f in \
-	    *=* | --[!k]*);; \
-	    *k*) failcom='fail=yes';; \
-	  esac; \
-	done; \
-	dot_seen=no; \
-	case "$@" in \
-	  distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \
-	  *) list='$(SUBDIRS)' ;; \
-	esac; \
-	rev=''; for subdir in $$list; do \
-	  if test "$$subdir" = "."; then :; else \
-	    rev="$$subdir $$rev"; \
-	  fi; \
-	done; \
-	rev="$$rev ."; \
-	target=`echo $@ | sed s/-recursive//`; \
-	for subdir in $$rev; do \
-	  echo "Making $$target in $$subdir"; \
-	  if test "$$subdir" = "."; then \
-	    local_target="$$target-am"; \
-	  else \
-	    local_target="$$target"; \
-	  fi; \
-	  (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
-	  || eval $$failcom; \
-	done && test -z "$$fail"
-tags-recursive:
-	list='$(SUBDIRS)'; for subdir in $$list; do \
-	  test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \
-	done
-ctags-recursive:
-	list='$(SUBDIRS)'; for subdir in $$list; do \
-	  test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \
-	done
-
-ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
-	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
-	unique=`for i in $$list; do \
-	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
-	  done | \
-	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
-	      END { if (nonempty) { for (i in files) print i; }; }'`; \
-	mkid -fID $$unique
-tags: TAGS
-
-TAGS: tags-recursive $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
-		$(TAGS_FILES) $(LISP)
-	tags=; \
-	here=`pwd`; \
-	if ($(ETAGS) --etags-include --version) >/dev/null 2>&1; then \
-	  include_option=--etags-include; \
-	  empty_fix=.; \
-	else \
-	  include_option=--include; \
-	  empty_fix=; \
-	fi; \
-	list='$(SUBDIRS)'; for subdir in $$list; do \
-	  if test "$$subdir" = .; then :; else \
-	    test ! -f $$subdir/TAGS || \
-	      tags="$$tags $$include_option=$$here/$$subdir/TAGS"; \
-	  fi; \
-	done; \
-	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
-	unique=`for i in $$list; do \
-	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
-	  done | \
-	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
-	      END { if (nonempty) { for (i in files) print i; }; }'`; \
-	if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
-	  test -n "$$unique" || unique=$$empty_fix; \
-	  $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
-	    $$tags $$unique; \
-	fi
-ctags: CTAGS
-CTAGS: ctags-recursive $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
-		$(TAGS_FILES) $(LISP)
-	tags=; \
-	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
-	unique=`for i in $$list; do \
-	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
-	  done | \
-	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
-	      END { if (nonempty) { for (i in files) print i; }; }'`; \
-	test -z "$(CTAGS_ARGS)$$tags$$unique" \
-	  || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
-	     $$tags $$unique
-
-GTAGS:
-	here=`$(am__cd) $(top_builddir) && pwd` \
-	  && cd $(top_srcdir) \
-	  && gtags -i $(GTAGS_ARGS) $$here
-
-distclean-tags:
-	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-	list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
-	  if test "$$subdir" = .; then :; else \
-	    test -d "$(distdir)/$$subdir" \
-	    || $(MKDIR_P) "$(distdir)/$$subdir" \
-	    || exit 1; \
-	    distdir=`$(am__cd) $(distdir) && pwd`; \
-	    top_distdir=`$(am__cd) $(top_distdir) && pwd`; \
-	    (cd $$subdir && \
-	      $(MAKE) $(AM_MAKEFLAGS) \
-	        top_distdir="$$top_distdir" \
-	        distdir="$$distdir/$$subdir" \
-		am__remove_distdir=: \
-		am__skip_length_check=: \
-	        distdir) \
-	      || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-recursive
-all-am: Makefile $(SCRIPTS)
-installdirs: installdirs-recursive
-installdirs-am:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-recursive
-install-exec: install-exec-recursive
-install-data: install-data-recursive
-uninstall: uninstall-recursive
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-recursive
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-recursive
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-recursive
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic distclean-tags
-
-dvi: dvi-recursive
-
-dvi-am:
-
-html: html-recursive
-
-info: info-recursive
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-recursive
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-recursive
-
-install-info: install-info-recursive
-
-install-man:
-
-install-pdf: install-pdf-recursive
-
-install-ps: install-ps-recursive
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-recursive
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-recursive
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-recursive
-
-pdf-am:
-
-ps: ps-recursive
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) install-am \
-	install-strip
-
-.PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \
-	all all-am check check-am clean clean-generic ctags \
-	ctags-recursive distclean distclean-generic distclean-tags \
-	distdir dvi dvi-am html html-am info info-am install \
-	install-am install-binSCRIPTS install-data install-data-am \
-	install-dvi install-dvi-am install-exec install-exec-am \
-	install-html install-html-am install-info install-info-am \
-	install-man install-pdf install-pdf-am install-ps \
-	install-ps-am install-strip installcheck installcheck-am \
-	installdirs installdirs-am maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am tags tags-recursive uninstall uninstall-am \
-	uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/Math/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Math/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/Math/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/Math
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Math
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Math
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Math/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/Math/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/Meca/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Meca/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/Meca/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/Meca
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Meca
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Meca
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Meca/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/Meca/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/Mesh/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Mesh/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/Mesh/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/Mesh
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Mesh
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Mesh
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Mesh/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/Mesh/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/Miscellaneous/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Miscellaneous/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/Miscellaneous/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/Miscellaneous
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Miscellaneous
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Miscellaneous
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Miscellaneous/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/Miscellaneous/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/Model/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Model/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/Model/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/Model
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Model
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Model
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Model/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/Model/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/Numerics/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Numerics/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/Numerics/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/Numerics
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Numerics
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Numerics
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Numerics/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/Numerics/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/OS/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/OS/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/OS/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/OS
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/OS
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/OS
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/OS/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/OS/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/Plot/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Plot/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/Plot/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/Plot
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Plot
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Plot
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Plot/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/Plot/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/Shell/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Shell/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/Shell/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/Shell
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Shell
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Shell
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Shell/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/Shell/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/String/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/String/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/String/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/String
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/String
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/String
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/String/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/String/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/consistency/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/consistency/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/consistency/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/consistency
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/consistency
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/consistency
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/consistency/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/consistency/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT:
Index: sm/trunk-jpl/src/m/utils/qmu/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/qmu/Makefile	(revision 11473)
+++ 	(revision )
@@ -1,399 +1,0 @@
-# Makefile.in generated by automake 1.10.2 from Makefile.am.
-# src/m/utils/qmu/Makefile.  Generated from Makefile.in by configure.
-
-# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
-# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
-# This Makefile.in is free software; the Free Software Foundation
-# gives unlimited permission to copy and/or distribute it,
-# with or without modifications, as long as this notice is preserved.
-
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
-# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
-# PARTICULAR PURPOSE.
-
-
-
-
-pkgdatadir = $(datadir)/issm
-pkglibdir = $(libdir)/issm
-pkgincludedir = $(includedir)/issm
-am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
-install_sh_DATA = $(install_sh) -c -m 644
-install_sh_PROGRAM = $(install_sh) -c
-install_sh_SCRIPT = $(install_sh) -c
-INSTALL_HEADER = $(INSTALL_DATA)
-transform = $(program_transform_name)
-NORMAL_INSTALL = :
-PRE_INSTALL = :
-POST_INSTALL = :
-NORMAL_UNINSTALL = :
-PRE_UNINSTALL = :
-POST_UNINSTALL = :
-build_triplet = i386-apple-darwin11.2.0
-host_triplet = i386-apple-darwin11.2.0
-target_triplet = i386-apple-darwin11.2.0
-subdir = src/m/utils/qmu
-DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
-ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
-am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
-	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
-am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
-	$(ACLOCAL_M4)
-mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
-CONFIG_CLEAN_FILES =
-am__installdirs = "$(DESTDIR)$(bindir)"
-binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
-SCRIPTS = $(bin_SCRIPTS)
-SOURCES =
-DIST_SOURCES =
-DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
-ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
-ADIC2INCL = 
-ADIC2LIB = 
-AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
-AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
-AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
-AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
-AWK = awk
-BLACSINCL = 
-BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
-BLASLAPACKINCL = 
-BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
-CC = gcc
-CCDEPMODE = depmode=gcc3
-CFLAGS = -g -O2
-CHACOINCL = 
-CHACOLIB = 
-CPP = gcc -E
-CPPFLAGS = 
-CXX = g++
-CXXDEPMODE = depmode=gcc3
-CXXFLAGS = -g -O2
-CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
-CYGPATH_W = echo
-DAKOTAINCL = 
-DAKOTALIB = 
-DEFS = -DHAVE_CONFIG_H
-DEPDIR = .deps
-ECHO_C = 
-ECHO_N = -n
-ECHO_T = 
-EXEEXT = 
-F77 = gfortran
-FFLAGS = -g -O2
-FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
-FORTRANLIB = /usr/local/lib/libgfortran.a
-GRAPHICSLIB = /usr/X11/lib/libX11.dylib
-HYPREINCL = 
-HYPRELIB = 
-INSTALL = /usr/bin/install -c
-INSTALL_DATA = ${INSTALL} -m 644
-INSTALL_PROGRAM = ${INSTALL}
-INSTALL_SCRIPT = ${INSTALL}
-INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
-LDFLAGS = 
-LIBOBJS = 
-LIBS = 
-LTLIBOBJS = 
-MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
-MATHLIB = /usr/lib/libm.dylib
-MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
-MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
-MATLAB_MAJOR = 7
-MATLAB_MINOR = 10
-MATLAB_VERSION = R2010a
-METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
-METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
-MEX = 
-MEXEXT = .mexmaci64
-MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
-MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
-MKDIR_P = ../../../.././install-sh -c -d
-MKLINCL = 
-MKLLIB = 
-MLINCL = 
-MLLIB = 
-MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
-MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
-MULTITHREADINGLIB = -lpthread
-MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
-MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
-OBJEXT = o
-PACKAGE = issm
-PACKAGE_BUGREPORT = issm@jpl.nasa.gov
-PACKAGE_NAME = ISSM
-PACKAGE_STRING = ISSM 4.0
-PACKAGE_TARNAME = issm
-PACKAGE_VERSION = 4.0
-PATH_SEPARATOR = :
-PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
-PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
-PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
-PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
-RANLIB = ranlib
-ROSEINCL = 
-ROSELIB = 
-SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
-SCOTCHINCL = 
-SCOTCHLIB = 
-SET_MAKE = 
-SHAPELIBINCL = 
-SHAPELIBLIB = 
-SHELL = /bin/sh
-SLEPCINCL = 
-SLEPCLIB = 
-STRIP = 
-TAOINCL = 
-TAOLIB = 
-TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
-TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
-VERSION = 4.0
-XMKMF = 
-X_CFLAGS = 
-X_EXTRA_LIBS = 
-X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
-X_PRE_LIBS =  -lSM -lICE
-abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/qmu
-abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/qmu
-abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
-abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
-ac_ct_CC = gcc
-ac_ct_CXX = g++
-ac_ct_F77 = gfortran
-am__include = include
-am__leading_dot = .
-am__quote = 
-am__tar = ${AMTAR} chof - "$$tardir"
-am__untar = ${AMTAR} xf -
-bindir = ${exec_prefix}/bin
-build = i386-apple-darwin11.2.0
-build_alias = 
-build_cpu = i386
-build_os = darwin11.2.0
-build_vendor = apple
-builddir = .
-datadir = ${datarootdir}
-datarootdir = ${prefix}/share
-docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
-dvidir = ${docdir}
-exec_prefix = ${prefix}
-host = i386-apple-darwin11.2.0
-host_alias = 
-host_cpu = i386
-host_os = darwin11.2.0
-host_vendor = apple
-htmldir = ${docdir}
-includedir = ${prefix}/include
-infodir = ${datarootdir}/info
-install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
-libdir = ${exec_prefix}/lib
-libexecdir = ${exec_prefix}/libexec
-localedir = ${datarootdir}/locale
-localstatedir = ${prefix}/var
-mandir = ${datarootdir}/man
-mkdir_p = $(top_builddir)/./install-sh -c -d
-oldincludedir = /usr/include
-pdfdir = ${docdir}
-prefix = /Users/larour/issm-uci//trunk-jpl
-program_transform_name = s,x,x,
-psdir = ${docdir}
-sbindir = ${exec_prefix}/sbin
-sharedstatedir = ${prefix}/com
-srcdir = .
-sysconfdir = ${prefix}/etc
-target = i386-apple-darwin11.2.0
-target_alias = 
-target_cpu = i386
-target_os = darwin11.2.0
-target_vendor = apple
-top_build_prefix = ../../../../
-top_builddir = ../../../..
-top_srcdir = ../../../..
-bin_SCRIPTS = *.m 
-all: all-am
-
-.SUFFIXES:
-$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
-	@for dep in $?; do \
-	  case '$(am__configure_deps)' in \
-	    *$$dep*) \
-	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
-	        && { if test -f $@; then exit 0; else break; fi; }; \
-	      exit 1;; \
-	  esac; \
-	done; \
-	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/qmu/Makefile'; \
-	cd $(top_srcdir) && \
-	  $(AUTOMAKE) --gnu  src/m/utils/qmu/Makefile
-.PRECIOUS: Makefile
-Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
-	@case '$?' in \
-	  *config.status*) \
-	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
-	  *) \
-	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
-	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
-	esac;
-
-$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-
-$(top_srcdir)/configure:  $(am__configure_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
-	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
-install-binSCRIPTS: $(bin_SCRIPTS)
-	@$(NORMAL_INSTALL)
-	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
-	  if test -f $$d$$p; then \
-	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
-	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
-	  else :; fi; \
-	done
-
-uninstall-binSCRIPTS:
-	@$(NORMAL_UNINSTALL)
-	@list='$(bin_SCRIPTS)'; for p in $$list; do \
-	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
-	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
-	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
-	done
-tags: TAGS
-TAGS:
-
-ctags: CTAGS
-CTAGS:
-
-
-distdir: $(DISTFILES)
-	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
-	list='$(DISTFILES)'; \
-	  dist_files=`for file in $$list; do echo $$file; done | \
-	  sed -e "s|^$$srcdirstrip/||;t" \
-	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
-	case $$dist_files in \
-	  */*) $(MKDIR_P) `echo "$$dist_files" | \
-			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
-			   sort -u` ;; \
-	esac; \
-	for file in $$dist_files; do \
-	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
-	  if test -d $$d/$$file; then \
-	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
-	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
-	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
-	    fi; \
-	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
-	  else \
-	    test -f $(distdir)/$$file \
-	    || cp -p $$d/$$file $(distdir)/$$file \
-	    || exit 1; \
-	  fi; \
-	done
-check-am: all-am
-check: check-am
-all-am: Makefile $(SCRIPTS)
-installdirs:
-	for dir in "$(DESTDIR)$(bindir)"; do \
-	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
-	done
-install: install-am
-install-exec: install-exec-am
-install-data: install-data-am
-uninstall: uninstall-am
-
-install-am: all-am
-	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
-
-installcheck: installcheck-am
-install-strip:
-	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
-	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
-	  `test -z '$(STRIP)' || \
-	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
-mostlyclean-generic:
-
-clean-generic:
-
-distclean-generic:
-	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
-
-maintainer-clean-generic:
-	@echo "This command is intended for maintainers to use"
-	@echo "it deletes files that may require special tools to rebuild."
-clean: clean-am
-
-clean-am: clean-generic mostlyclean-am
-
-distclean: distclean-am
-	-rm -f Makefile
-distclean-am: clean-am distclean-generic
-
-dvi: dvi-am
-
-dvi-am:
-
-html: html-am
-
-info: info-am
-
-info-am:
-
-install-data-am:
-
-install-dvi: install-dvi-am
-
-install-exec-am: install-binSCRIPTS
-
-install-html: install-html-am
-
-install-info: install-info-am
-
-install-man:
-
-install-pdf: install-pdf-am
-
-install-ps: install-ps-am
-
-installcheck-am:
-
-maintainer-clean: maintainer-clean-am
-	-rm -f Makefile
-maintainer-clean-am: distclean-am maintainer-clean-generic
-
-mostlyclean: mostlyclean-am
-
-mostlyclean-am: mostlyclean-generic
-
-pdf: pdf-am
-
-pdf-am:
-
-ps: ps-am
-
-ps-am:
-
-uninstall-am: uninstall-binSCRIPTS
-
-.MAKE: install-am install-strip
-
-.PHONY: all all-am check check-am clean clean-generic distclean \
-	distclean-generic distdir dvi dvi-am html html-am info info-am \
-	install install-am install-binSCRIPTS install-data \
-	install-data-am install-dvi install-dvi-am install-exec \
-	install-exec-am install-html install-html-am install-info \
-	install-info-am install-man install-pdf install-pdf-am \
-	install-ps install-ps-am install-strip installcheck \
-	installcheck-am installdirs maintainer-clean \
-	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
-	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
-
-# Tell versions [3.59,3.63) of GNU make to not export all variables.
-# Otherwise a system limit (for SysV at least) may be exceeded.
-.NOEXPORT: