Index: /issm/trunk-jpl/src/m/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/Makefile	(revision 11472)
@@ -0,0 +1,530 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+SOURCES =
+DIST_SOURCES =
+RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \
+	html-recursive info-recursive install-data-recursive \
+	install-dvi-recursive install-exec-recursive \
+	install-html-recursive install-info-recursive \
+	install-pdf-recursive install-ps-recursive install-recursive \
+	installcheck-recursive installdirs-recursive pdf-recursive \
+	ps-recursive uninstall-recursive
+RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive	\
+  distclean-recursive maintainer-clean-recursive
+ETAGS = etags
+CTAGS = ctags
+DIST_SUBDIRS = $(SUBDIRS)
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../
+top_builddir = ../..
+top_srcdir = ../..
+SUBDIRS = classes enum kml model planet qmu shared solutions solvers utils
+all: all-recursive
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+# This directory's subdirectories are mostly independent; you can cd
+# into them and run `make' without going through this Makefile.
+# To change the values of `make' variables: instead of editing Makefiles,
+# (1) if the variable is set in `config.status', edit `config.status'
+#     (which will cause the Makefiles to be regenerated when you run `make');
+# (2) otherwise, pass the desired values on the `make' command line.
+$(RECURSIVE_TARGETS):
+	@failcom='exit 1'; \
+	for f in x $$MAKEFLAGS; do \
+	  case $$f in \
+	    *=* | --[!k]*);; \
+	    *k*) failcom='fail=yes';; \
+	  esac; \
+	done; \
+	dot_seen=no; \
+	target=`echo $@ | sed s/-recursive//`; \
+	list='$(SUBDIRS)'; for subdir in $$list; do \
+	  echo "Making $$target in $$subdir"; \
+	  if test "$$subdir" = "."; then \
+	    dot_seen=yes; \
+	    local_target="$$target-am"; \
+	  else \
+	    local_target="$$target"; \
+	  fi; \
+	  (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
+	  || eval $$failcom; \
+	done; \
+	if test "$$dot_seen" = "no"; then \
+	  $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \
+	fi; test -z "$$fail"
+
+$(RECURSIVE_CLEAN_TARGETS):
+	@failcom='exit 1'; \
+	for f in x $$MAKEFLAGS; do \
+	  case $$f in \
+	    *=* | --[!k]*);; \
+	    *k*) failcom='fail=yes';; \
+	  esac; \
+	done; \
+	dot_seen=no; \
+	case "$@" in \
+	  distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \
+	  *) list='$(SUBDIRS)' ;; \
+	esac; \
+	rev=''; for subdir in $$list; do \
+	  if test "$$subdir" = "."; then :; else \
+	    rev="$$subdir $$rev"; \
+	  fi; \
+	done; \
+	rev="$$rev ."; \
+	target=`echo $@ | sed s/-recursive//`; \
+	for subdir in $$rev; do \
+	  echo "Making $$target in $$subdir"; \
+	  if test "$$subdir" = "."; then \
+	    local_target="$$target-am"; \
+	  else \
+	    local_target="$$target"; \
+	  fi; \
+	  (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
+	  || eval $$failcom; \
+	done && test -z "$$fail"
+tags-recursive:
+	list='$(SUBDIRS)'; for subdir in $$list; do \
+	  test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \
+	done
+ctags-recursive:
+	list='$(SUBDIRS)'; for subdir in $$list; do \
+	  test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \
+	done
+
+ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
+	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+	      END { if (nonempty) { for (i in files) print i; }; }'`; \
+	mkid -fID $$unique
+tags: TAGS
+
+TAGS: tags-recursive $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	tags=; \
+	here=`pwd`; \
+	if ($(ETAGS) --etags-include --version) >/dev/null 2>&1; then \
+	  include_option=--etags-include; \
+	  empty_fix=.; \
+	else \
+	  include_option=--include; \
+	  empty_fix=; \
+	fi; \
+	list='$(SUBDIRS)'; for subdir in $$list; do \
+	  if test "$$subdir" = .; then :; else \
+	    test ! -f $$subdir/TAGS || \
+	      tags="$$tags $$include_option=$$here/$$subdir/TAGS"; \
+	  fi; \
+	done; \
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+	      END { if (nonempty) { for (i in files) print i; }; }'`; \
+	if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
+	  test -n "$$unique" || unique=$$empty_fix; \
+	  $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+	    $$tags $$unique; \
+	fi
+ctags: CTAGS
+CTAGS: ctags-recursive $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	tags=; \
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+	      END { if (nonempty) { for (i in files) print i; }; }'`; \
+	test -z "$(CTAGS_ARGS)$$tags$$unique" \
+	  || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
+	     $$tags $$unique
+
+GTAGS:
+	here=`$(am__cd) $(top_builddir) && pwd` \
+	  && cd $(top_srcdir) \
+	  && gtags -i $(GTAGS_ARGS) $$here
+
+distclean-tags:
+	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+	list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
+	  if test "$$subdir" = .; then :; else \
+	    test -d "$(distdir)/$$subdir" \
+	    || $(MKDIR_P) "$(distdir)/$$subdir" \
+	    || exit 1; \
+	    distdir=`$(am__cd) $(distdir) && pwd`; \
+	    top_distdir=`$(am__cd) $(top_distdir) && pwd`; \
+	    (cd $$subdir && \
+	      $(MAKE) $(AM_MAKEFLAGS) \
+	        top_distdir="$$top_distdir" \
+	        distdir="$$distdir/$$subdir" \
+		am__remove_distdir=: \
+		am__skip_length_check=: \
+	        distdir) \
+	      || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-recursive
+all-am: Makefile
+installdirs: installdirs-recursive
+installdirs-am:
+install: install-recursive
+install-exec: install-exec-recursive
+install-data: install-data-recursive
+uninstall: uninstall-recursive
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-recursive
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-recursive
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-recursive
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic distclean-tags
+
+dvi: dvi-recursive
+
+dvi-am:
+
+html: html-recursive
+
+info: info-recursive
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-recursive
+
+install-exec-am:
+
+install-html: install-html-recursive
+
+install-info: install-info-recursive
+
+install-man:
+
+install-pdf: install-pdf-recursive
+
+install-ps: install-ps-recursive
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-recursive
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-recursive
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-recursive
+
+pdf-am:
+
+ps: ps-recursive
+
+ps-am:
+
+uninstall-am:
+
+.MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) install-am \
+	install-strip
+
+.PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \
+	all all-am check check-am clean clean-generic ctags \
+	ctags-recursive distclean distclean-generic distclean-tags \
+	distdir dvi dvi-am html html-am info info-am install \
+	install-am install-data install-data-am install-dvi \
+	install-dvi-am install-exec install-exec-am install-html \
+	install-html-am install-info install-info-am install-man \
+	install-pdf install-pdf-am install-ps install-ps-am \
+	install-strip installcheck installcheck-am installdirs \
+	installdirs-am maintainer-clean maintainer-clean-generic \
+	mostlyclean mostlyclean-generic pdf pdf-am ps ps-am tags \
+	tags-recursive uninstall uninstall-am
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+SUBDIRS = classes enum kml model planet qmu shared solutions solvers utils
Index: /issm/trunk-jpl/src/m/classes/@modellist/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/classes/@modellist/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/classes/@modellist/Makefile	(revision 11472)
@@ -0,0 +1,404 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/classes/@modellist/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/classes/@modellist
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+SOURCES =
+DIST_SOURCES =
+am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
+am__vpath_adj = case $$p in \
+    $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
+    *) f=$$p;; \
+  esac;
+am__strip_dir = `echo $$p | sed -e 's|^.*/||'`;
+am__installdirs = "$(DESTDIR)$(classesdir)"
+classesDATA_INSTALL = $(INSTALL_DATA)
+DATA = $(classes_DATA)
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/classes/@modellist
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/classes/@modellist
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+classesdir = $(bindir)/@modellist
+classes_DATA = *.m
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/classes/@modellist/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/classes/@modellist/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-classesDATA: $(classes_DATA)
+	@$(NORMAL_INSTALL)
+	test -z "$(classesdir)" || $(MKDIR_P) "$(DESTDIR)$(classesdir)"
+	@list='$(classes_DATA)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  f=$(am__strip_dir) \
+	  echo " $(classesDATA_INSTALL) '$$d$$p' '$(DESTDIR)$(classesdir)/$$f'"; \
+	  $(classesDATA_INSTALL) "$$d$$p" "$(DESTDIR)$(classesdir)/$$f"; \
+	done
+
+uninstall-classesDATA:
+	@$(NORMAL_UNINSTALL)
+	@list='$(classes_DATA)'; for p in $$list; do \
+	  f=$(am__strip_dir) \
+	  echo " rm -f '$(DESTDIR)$(classesdir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(classesdir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(DATA)
+installdirs:
+	for dir in "$(DESTDIR)$(classesdir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am: install-classesDATA
+
+install-dvi: install-dvi-am
+
+install-exec-am:
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-classesDATA
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-classesDATA install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-classesDATA
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/classes/@modellist/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/classes/@modellist/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/classes/@modellist/Makefile.am	(revision 11472)
@@ -0,0 +1,2 @@
+classesdir=$(bindir)/@modellist
+classes_DATA=*.m
Index: /issm/trunk-jpl/src/m/classes/@pairoptions/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/classes/@pairoptions/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/classes/@pairoptions/Makefile	(revision 11472)
@@ -0,0 +1,404 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/classes/@pairoptions/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/classes/@pairoptions
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+SOURCES =
+DIST_SOURCES =
+am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
+am__vpath_adj = case $$p in \
+    $(srcdir)/*) f=`echo "$$p" | sed "s|^$$srcdirstrip/||"`;; \
+    *) f=$$p;; \
+  esac;
+am__strip_dir = `echo $$p | sed -e 's|^.*/||'`;
+am__installdirs = "$(DESTDIR)$(classesdir)"
+classesDATA_INSTALL = $(INSTALL_DATA)
+DATA = $(classes_DATA)
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/classes/@pairoptions
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/classes/@pairoptions
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+classesdir = $(bindir)/@pairoptions
+classes_DATA = *.m
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/classes/@pairoptions/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/classes/@pairoptions/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-classesDATA: $(classes_DATA)
+	@$(NORMAL_INSTALL)
+	test -z "$(classesdir)" || $(MKDIR_P) "$(DESTDIR)$(classesdir)"
+	@list='$(classes_DATA)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  f=$(am__strip_dir) \
+	  echo " $(classesDATA_INSTALL) '$$d$$p' '$(DESTDIR)$(classesdir)/$$f'"; \
+	  $(classesDATA_INSTALL) "$$d$$p" "$(DESTDIR)$(classesdir)/$$f"; \
+	done
+
+uninstall-classesDATA:
+	@$(NORMAL_UNINSTALL)
+	@list='$(classes_DATA)'; for p in $$list; do \
+	  f=$(am__strip_dir) \
+	  echo " rm -f '$(DESTDIR)$(classesdir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(classesdir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(DATA)
+installdirs:
+	for dir in "$(DESTDIR)$(classesdir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am: install-classesDATA
+
+install-dvi: install-dvi-am
+
+install-exec-am:
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-classesDATA
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-classesDATA install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-classesDATA
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/classes/@pairoptions/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/classes/@pairoptions/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/classes/@pairoptions/Makefile.am	(revision 11472)
@@ -0,0 +1,2 @@
+classesdir=$(bindir)/@pairoptions
+classes_DATA=*.m
Index: /issm/trunk-jpl/src/m/classes/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/classes/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/classes/Makefile	(revision 11472)
@@ -0,0 +1,558 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/classes/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/classes
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \
+	html-recursive info-recursive install-data-recursive \
+	install-dvi-recursive install-exec-recursive \
+	install-html-recursive install-info-recursive \
+	install-pdf-recursive install-ps-recursive install-recursive \
+	installcheck-recursive installdirs-recursive pdf-recursive \
+	ps-recursive uninstall-recursive
+RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive	\
+  distclean-recursive maintainer-clean-recursive
+ETAGS = etags
+CTAGS = ctags
+DIST_SUBDIRS = $(SUBDIRS)
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/classes
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/classes
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../
+top_builddir = ../../..
+top_srcdir = ../../..
+SUBDIRS = @pairoptions @modellist
+bin_SCRIPTS = *.m 
+all: all-recursive
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/classes/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/classes/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+
+# This directory's subdirectories are mostly independent; you can cd
+# into them and run `make' without going through this Makefile.
+# To change the values of `make' variables: instead of editing Makefiles,
+# (1) if the variable is set in `config.status', edit `config.status'
+#     (which will cause the Makefiles to be regenerated when you run `make');
+# (2) otherwise, pass the desired values on the `make' command line.
+$(RECURSIVE_TARGETS):
+	@failcom='exit 1'; \
+	for f in x $$MAKEFLAGS; do \
+	  case $$f in \
+	    *=* | --[!k]*);; \
+	    *k*) failcom='fail=yes';; \
+	  esac; \
+	done; \
+	dot_seen=no; \
+	target=`echo $@ | sed s/-recursive//`; \
+	list='$(SUBDIRS)'; for subdir in $$list; do \
+	  echo "Making $$target in $$subdir"; \
+	  if test "$$subdir" = "."; then \
+	    dot_seen=yes; \
+	    local_target="$$target-am"; \
+	  else \
+	    local_target="$$target"; \
+	  fi; \
+	  (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
+	  || eval $$failcom; \
+	done; \
+	if test "$$dot_seen" = "no"; then \
+	  $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \
+	fi; test -z "$$fail"
+
+$(RECURSIVE_CLEAN_TARGETS):
+	@failcom='exit 1'; \
+	for f in x $$MAKEFLAGS; do \
+	  case $$f in \
+	    *=* | --[!k]*);; \
+	    *k*) failcom='fail=yes';; \
+	  esac; \
+	done; \
+	dot_seen=no; \
+	case "$@" in \
+	  distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \
+	  *) list='$(SUBDIRS)' ;; \
+	esac; \
+	rev=''; for subdir in $$list; do \
+	  if test "$$subdir" = "."; then :; else \
+	    rev="$$subdir $$rev"; \
+	  fi; \
+	done; \
+	rev="$$rev ."; \
+	target=`echo $@ | sed s/-recursive//`; \
+	for subdir in $$rev; do \
+	  echo "Making $$target in $$subdir"; \
+	  if test "$$subdir" = "."; then \
+	    local_target="$$target-am"; \
+	  else \
+	    local_target="$$target"; \
+	  fi; \
+	  (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
+	  || eval $$failcom; \
+	done && test -z "$$fail"
+tags-recursive:
+	list='$(SUBDIRS)'; for subdir in $$list; do \
+	  test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \
+	done
+ctags-recursive:
+	list='$(SUBDIRS)'; for subdir in $$list; do \
+	  test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \
+	done
+
+ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
+	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+	      END { if (nonempty) { for (i in files) print i; }; }'`; \
+	mkid -fID $$unique
+tags: TAGS
+
+TAGS: tags-recursive $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	tags=; \
+	here=`pwd`; \
+	if ($(ETAGS) --etags-include --version) >/dev/null 2>&1; then \
+	  include_option=--etags-include; \
+	  empty_fix=.; \
+	else \
+	  include_option=--include; \
+	  empty_fix=; \
+	fi; \
+	list='$(SUBDIRS)'; for subdir in $$list; do \
+	  if test "$$subdir" = .; then :; else \
+	    test ! -f $$subdir/TAGS || \
+	      tags="$$tags $$include_option=$$here/$$subdir/TAGS"; \
+	  fi; \
+	done; \
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+	      END { if (nonempty) { for (i in files) print i; }; }'`; \
+	if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
+	  test -n "$$unique" || unique=$$empty_fix; \
+	  $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+	    $$tags $$unique; \
+	fi
+ctags: CTAGS
+CTAGS: ctags-recursive $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	tags=; \
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+	      END { if (nonempty) { for (i in files) print i; }; }'`; \
+	test -z "$(CTAGS_ARGS)$$tags$$unique" \
+	  || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
+	     $$tags $$unique
+
+GTAGS:
+	here=`$(am__cd) $(top_builddir) && pwd` \
+	  && cd $(top_srcdir) \
+	  && gtags -i $(GTAGS_ARGS) $$here
+
+distclean-tags:
+	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+	list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
+	  if test "$$subdir" = .; then :; else \
+	    test -d "$(distdir)/$$subdir" \
+	    || $(MKDIR_P) "$(distdir)/$$subdir" \
+	    || exit 1; \
+	    distdir=`$(am__cd) $(distdir) && pwd`; \
+	    top_distdir=`$(am__cd) $(top_distdir) && pwd`; \
+	    (cd $$subdir && \
+	      $(MAKE) $(AM_MAKEFLAGS) \
+	        top_distdir="$$top_distdir" \
+	        distdir="$$distdir/$$subdir" \
+		am__remove_distdir=: \
+		am__skip_length_check=: \
+	        distdir) \
+	      || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-recursive
+all-am: Makefile $(SCRIPTS)
+installdirs: installdirs-recursive
+installdirs-am:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-recursive
+install-exec: install-exec-recursive
+install-data: install-data-recursive
+uninstall: uninstall-recursive
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-recursive
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-recursive
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-recursive
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic distclean-tags
+
+dvi: dvi-recursive
+
+dvi-am:
+
+html: html-recursive
+
+info: info-recursive
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-recursive
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-recursive
+
+install-info: install-info-recursive
+
+install-man:
+
+install-pdf: install-pdf-recursive
+
+install-ps: install-ps-recursive
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-recursive
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-recursive
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-recursive
+
+pdf-am:
+
+ps: ps-recursive
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) install-am \
+	install-strip
+
+.PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \
+	all all-am check check-am clean clean-generic ctags \
+	ctags-recursive distclean distclean-generic distclean-tags \
+	distdir dvi dvi-am html html-am info info-am install \
+	install-am install-binSCRIPTS install-data install-data-am \
+	install-dvi install-dvi-am install-exec install-exec-am \
+	install-html install-html-am install-info install-info-am \
+	install-man install-pdf install-pdf-am install-ps \
+	install-ps-am install-strip installcheck installcheck-am \
+	installdirs installdirs-am maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am tags tags-recursive uninstall uninstall-am \
+	uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/classes/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/classes/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/classes/Makefile.am	(revision 11472)
@@ -0,0 +1,2 @@
+SUBDIRS = @pairoptions @modellist
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/enum/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/enum/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/enum/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/enum/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/enum
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/enum
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/enum
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../
+top_builddir = ../../..
+top_srcdir = ../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/enum/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/enum/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/enum/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/enum/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/enum/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/kml/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/kml/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/kml/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/kml/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/kml
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/kml
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/kml
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../
+top_builddir = ../../..
+top_srcdir = ../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/kml/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/kml/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/kml/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/kml/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/kml/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/model/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/model/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/model/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/model/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/model
+DIST_COMMON = README $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/model
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/model
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../
+top_builddir = ../../..
+top_srcdir = ../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/model/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/model/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/model/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/model/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/model/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/planet/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/planet/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/planet/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/planet/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/planet
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/planet
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/planet
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../
+top_builddir = ../../..
+top_srcdir = ../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/planet/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/planet/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/planet/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/planet/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/planet/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/qmu/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/qmu/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/qmu/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/qmu/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/qmu
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/qmu
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/qmu
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../
+top_builddir = ../../..
+top_srcdir = ../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/qmu/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/qmu/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/qmu/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/qmu/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/qmu/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/shared/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/shared/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/shared/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/shared/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/shared
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/shared
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/shared
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../
+top_builddir = ../../..
+top_srcdir = ../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/shared/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/shared/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/shared/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/shared/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/shared/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/solutions/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/solutions/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/solutions/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/solutions/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/solutions
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/solutions
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/solutions
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../
+top_builddir = ../../..
+top_srcdir = ../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/solutions/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/solutions/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/solutions/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/solutions/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/solutions/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/solvers/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/solvers/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/solvers/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/solvers/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/solvers
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/solvers
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/solvers
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../
+top_builddir = ../../..
+top_srcdir = ../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/solvers/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/solvers/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/solvers/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/solvers/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/solvers/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/Analysis/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Analysis/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Analysis/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/Analysis/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/Analysis
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Analysis
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Analysis
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Analysis/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/Analysis/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/Analysis/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/Analysis/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Analysis/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/Array/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Array/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Array/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/Array/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/Array
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Array
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Array
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Array/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/Array/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/Array/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/Array/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Array/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/BC/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/BC/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/BC/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/BC/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/BC
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/BC
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/BC
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/BC/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/BC/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/BC/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/BC/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/BC/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/Basins/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Basins/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Basins/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/Basins/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/Basins
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Basins
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Basins
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Basins/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/Basins/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/Basins/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/Basins/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Basins/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/Cluster/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Cluster/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Cluster/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/Cluster/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/Cluster
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Cluster
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Cluster
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Cluster/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/Cluster/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/Cluster/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/Cluster/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Cluster/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/DataProcessing/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/DataProcessing/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/DataProcessing/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/DataProcessing/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/DataProcessing
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/DataProcessing
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/DataProcessing
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/DataProcessing/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/DataProcessing/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/DataProcessing/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/DataProcessing/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/DataProcessing/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/Ecco3/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Ecco3/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Ecco3/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/Ecco3/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/Ecco3
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Ecco3
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Ecco3
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Ecco3/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/Ecco3/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/Ecco3/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/Ecco3/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Ecco3/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/Exp/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Exp/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Exp/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/Exp/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/Exp
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Exp
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Exp
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Exp/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/Exp/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/Exp/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/Exp/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Exp/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/Geometry/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Geometry/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Geometry/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/Geometry/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/Geometry
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Geometry
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Geometry
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Geometry/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/Geometry/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/Geometry/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/Geometry/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Geometry/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/ImageProcessing/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/ImageProcessing/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/ImageProcessing/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/ImageProcessing/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/ImageProcessing
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/ImageProcessing
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/ImageProcessing
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/ImageProcessing/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/ImageProcessing/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/ImageProcessing/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/ImageProcessing/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/ImageProcessing/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/Interp/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Interp/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Interp/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/Interp/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/Interp
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Interp
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Interp
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Interp/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/Interp/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/Interp/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/Interp/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Interp/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/Kml/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Kml/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Kml/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/Kml/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/Kml
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Kml
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Kml
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Kml/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/Kml/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/Kml/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/Kml/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Kml/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/LatLong/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/LatLong/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/LatLong/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/LatLong/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/LatLong
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/LatLong
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/LatLong
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/LatLong/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/LatLong/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/LatLong/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/LatLong/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/LatLong/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Makefile	(revision 11472)
@@ -0,0 +1,558 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+RECURSIVE_TARGETS = all-recursive check-recursive dvi-recursive \
+	html-recursive info-recursive install-data-recursive \
+	install-dvi-recursive install-exec-recursive \
+	install-html-recursive install-info-recursive \
+	install-pdf-recursive install-ps-recursive install-recursive \
+	installcheck-recursive installdirs-recursive pdf-recursive \
+	ps-recursive uninstall-recursive
+RECURSIVE_CLEAN_TARGETS = mostlyclean-recursive clean-recursive	\
+  distclean-recursive maintainer-clean-recursive
+ETAGS = etags
+CTAGS = ctags
+DIST_SUBDIRS = $(SUBDIRS)
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../
+top_builddir = ../../..
+top_srcdir = ../../..
+SUBDIRS = Analysis Array BC Basins Cluster DataProcessing Ecco3 Exp Geometry ImageProcessing Interp Kml LatLong Math Meca Mesh Miscellaneous Model Numerics OS Plot Shell String consistency qmu
+bin_SCRIPTS = *.m 
+all: all-recursive
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+
+# This directory's subdirectories are mostly independent; you can cd
+# into them and run `make' without going through this Makefile.
+# To change the values of `make' variables: instead of editing Makefiles,
+# (1) if the variable is set in `config.status', edit `config.status'
+#     (which will cause the Makefiles to be regenerated when you run `make');
+# (2) otherwise, pass the desired values on the `make' command line.
+$(RECURSIVE_TARGETS):
+	@failcom='exit 1'; \
+	for f in x $$MAKEFLAGS; do \
+	  case $$f in \
+	    *=* | --[!k]*);; \
+	    *k*) failcom='fail=yes';; \
+	  esac; \
+	done; \
+	dot_seen=no; \
+	target=`echo $@ | sed s/-recursive//`; \
+	list='$(SUBDIRS)'; for subdir in $$list; do \
+	  echo "Making $$target in $$subdir"; \
+	  if test "$$subdir" = "."; then \
+	    dot_seen=yes; \
+	    local_target="$$target-am"; \
+	  else \
+	    local_target="$$target"; \
+	  fi; \
+	  (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
+	  || eval $$failcom; \
+	done; \
+	if test "$$dot_seen" = "no"; then \
+	  $(MAKE) $(AM_MAKEFLAGS) "$$target-am" || exit 1; \
+	fi; test -z "$$fail"
+
+$(RECURSIVE_CLEAN_TARGETS):
+	@failcom='exit 1'; \
+	for f in x $$MAKEFLAGS; do \
+	  case $$f in \
+	    *=* | --[!k]*);; \
+	    *k*) failcom='fail=yes';; \
+	  esac; \
+	done; \
+	dot_seen=no; \
+	case "$@" in \
+	  distclean-* | maintainer-clean-*) list='$(DIST_SUBDIRS)' ;; \
+	  *) list='$(SUBDIRS)' ;; \
+	esac; \
+	rev=''; for subdir in $$list; do \
+	  if test "$$subdir" = "."; then :; else \
+	    rev="$$subdir $$rev"; \
+	  fi; \
+	done; \
+	rev="$$rev ."; \
+	target=`echo $@ | sed s/-recursive//`; \
+	for subdir in $$rev; do \
+	  echo "Making $$target in $$subdir"; \
+	  if test "$$subdir" = "."; then \
+	    local_target="$$target-am"; \
+	  else \
+	    local_target="$$target"; \
+	  fi; \
+	  (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) $$local_target) \
+	  || eval $$failcom; \
+	done && test -z "$$fail"
+tags-recursive:
+	list='$(SUBDIRS)'; for subdir in $$list; do \
+	  test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) tags); \
+	done
+ctags-recursive:
+	list='$(SUBDIRS)'; for subdir in $$list; do \
+	  test "$$subdir" = . || (cd $$subdir && $(MAKE) $(AM_MAKEFLAGS) ctags); \
+	done
+
+ID: $(HEADERS) $(SOURCES) $(LISP) $(TAGS_FILES)
+	list='$(SOURCES) $(HEADERS) $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+	      END { if (nonempty) { for (i in files) print i; }; }'`; \
+	mkid -fID $$unique
+tags: TAGS
+
+TAGS: tags-recursive $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	tags=; \
+	here=`pwd`; \
+	if ($(ETAGS) --etags-include --version) >/dev/null 2>&1; then \
+	  include_option=--etags-include; \
+	  empty_fix=.; \
+	else \
+	  include_option=--include; \
+	  empty_fix=; \
+	fi; \
+	list='$(SUBDIRS)'; for subdir in $$list; do \
+	  if test "$$subdir" = .; then :; else \
+	    test ! -f $$subdir/TAGS || \
+	      tags="$$tags $$include_option=$$here/$$subdir/TAGS"; \
+	  fi; \
+	done; \
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+	      END { if (nonempty) { for (i in files) print i; }; }'`; \
+	if test -z "$(ETAGS_ARGS)$$tags$$unique"; then :; else \
+	  test -n "$$unique" || unique=$$empty_fix; \
+	  $(ETAGS) $(ETAGSFLAGS) $(AM_ETAGSFLAGS) $(ETAGS_ARGS) \
+	    $$tags $$unique; \
+	fi
+ctags: CTAGS
+CTAGS: ctags-recursive $(HEADERS) $(SOURCES)  $(TAGS_DEPENDENCIES) \
+		$(TAGS_FILES) $(LISP)
+	tags=; \
+	list='$(SOURCES) $(HEADERS)  $(LISP) $(TAGS_FILES)'; \
+	unique=`for i in $$list; do \
+	    if test -f "$$i"; then echo $$i; else echo $(srcdir)/$$i; fi; \
+	  done | \
+	  $(AWK) '{ files[$$0] = 1; nonempty = 1; } \
+	      END { if (nonempty) { for (i in files) print i; }; }'`; \
+	test -z "$(CTAGS_ARGS)$$tags$$unique" \
+	  || $(CTAGS) $(CTAGSFLAGS) $(AM_CTAGSFLAGS) $(CTAGS_ARGS) \
+	     $$tags $$unique
+
+GTAGS:
+	here=`$(am__cd) $(top_builddir) && pwd` \
+	  && cd $(top_srcdir) \
+	  && gtags -i $(GTAGS_ARGS) $$here
+
+distclean-tags:
+	-rm -f TAGS ID GTAGS GRTAGS GSYMS GPATH tags
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+	list='$(DIST_SUBDIRS)'; for subdir in $$list; do \
+	  if test "$$subdir" = .; then :; else \
+	    test -d "$(distdir)/$$subdir" \
+	    || $(MKDIR_P) "$(distdir)/$$subdir" \
+	    || exit 1; \
+	    distdir=`$(am__cd) $(distdir) && pwd`; \
+	    top_distdir=`$(am__cd) $(top_distdir) && pwd`; \
+	    (cd $$subdir && \
+	      $(MAKE) $(AM_MAKEFLAGS) \
+	        top_distdir="$$top_distdir" \
+	        distdir="$$distdir/$$subdir" \
+		am__remove_distdir=: \
+		am__skip_length_check=: \
+	        distdir) \
+	      || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-recursive
+all-am: Makefile $(SCRIPTS)
+installdirs: installdirs-recursive
+installdirs-am:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-recursive
+install-exec: install-exec-recursive
+install-data: install-data-recursive
+uninstall: uninstall-recursive
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-recursive
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-recursive
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-recursive
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic distclean-tags
+
+dvi: dvi-recursive
+
+dvi-am:
+
+html: html-recursive
+
+info: info-recursive
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-recursive
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-recursive
+
+install-info: install-info-recursive
+
+install-man:
+
+install-pdf: install-pdf-recursive
+
+install-ps: install-ps-recursive
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-recursive
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-recursive
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-recursive
+
+pdf-am:
+
+ps: ps-recursive
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) install-am \
+	install-strip
+
+.PHONY: $(RECURSIVE_CLEAN_TARGETS) $(RECURSIVE_TARGETS) CTAGS GTAGS \
+	all all-am check check-am clean clean-generic ctags \
+	ctags-recursive distclean distclean-generic distclean-tags \
+	distdir dvi dvi-am html html-am info info-am install \
+	install-am install-binSCRIPTS install-data install-data-am \
+	install-dvi install-dvi-am install-exec install-exec-am \
+	install-html install-html-am install-info install-info-am \
+	install-man install-pdf install-pdf-am install-ps \
+	install-ps-am install-strip installcheck installcheck-am \
+	installdirs installdirs-am maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am tags tags-recursive uninstall uninstall-am \
+	uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Makefile.am	(revision 11472)
@@ -0,0 +1,2 @@
+SUBDIRS = Analysis Array BC Basins Cluster DataProcessing Ecco3 Exp Geometry ImageProcessing Interp Kml LatLong Math Meca Mesh Miscellaneous Model Numerics OS Plot Shell String consistency qmu
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/Math/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Math/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Math/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/Math/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/Math
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Math
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Math
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Math/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/Math/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/Math/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/Math/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Math/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/Meca/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Meca/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Meca/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/Meca/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/Meca
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Meca
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Meca
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Meca/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/Meca/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/Meca/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/Meca/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Meca/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/Mesh/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Mesh/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Mesh/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/Mesh/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/Mesh
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Mesh
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Mesh
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Mesh/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/Mesh/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/Mesh/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/Mesh/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Mesh/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/Miscellaneous/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Miscellaneous/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Miscellaneous/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/Miscellaneous/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/Miscellaneous
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Miscellaneous
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Miscellaneous
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Miscellaneous/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/Miscellaneous/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/Miscellaneous/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/Miscellaneous/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Miscellaneous/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/Model/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Model/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Model/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/Model/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/Model
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Model
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Model
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Model/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/Model/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/Model/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/Model/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Model/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/Numerics/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Numerics/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Numerics/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/Numerics/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/Numerics
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Numerics
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Numerics
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Numerics/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/Numerics/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/Numerics/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/Numerics/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Numerics/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/OS/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/OS/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/OS/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/OS/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/OS
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/OS
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/OS
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/OS/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/OS/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/OS/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/OS/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/OS/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/Plot/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Plot/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Plot/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/Plot/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/Plot
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Plot
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Plot
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Plot/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/Plot/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/Plot/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/Plot/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Plot/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/Shell/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/Shell/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Shell/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/Shell/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/Shell
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Shell
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/Shell
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/Shell/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/Shell/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/Shell/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/Shell/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/Shell/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/String/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/String/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/String/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/String/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/String
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/String
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/String
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/String/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/String/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/String/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/String/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/String/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/consistency/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/consistency/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/consistency/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/consistency/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/consistency
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/consistency
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/consistency
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/consistency/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/consistency/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/consistency/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/consistency/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/consistency/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
Index: /issm/trunk-jpl/src/m/utils/qmu/Makefile
===================================================================
--- /issm/trunk-jpl/src/m/utils/qmu/Makefile	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/qmu/Makefile	(revision 11472)
@@ -0,0 +1,399 @@
+# Makefile.in generated by automake 1.10.2 from Makefile.am.
+# src/m/utils/qmu/Makefile.  Generated from Makefile.in by configure.
+
+# Copyright (C) 1994, 1995, 1996, 1997, 1998, 1999, 2000, 2001, 2002,
+# 2003, 2004, 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
+# This Makefile.in is free software; the Free Software Foundation
+# gives unlimited permission to copy and/or distribute it,
+# with or without modifications, as long as this notice is preserved.
+
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY, to the extent permitted by law; without
+# even the implied warranty of MERCHANTABILITY or FITNESS FOR A
+# PARTICULAR PURPOSE.
+
+
+
+
+pkgdatadir = $(datadir)/issm
+pkglibdir = $(libdir)/issm
+pkgincludedir = $(includedir)/issm
+am__cd = CDPATH="$${ZSH_VERSION+.}$(PATH_SEPARATOR)" && cd
+install_sh_DATA = $(install_sh) -c -m 644
+install_sh_PROGRAM = $(install_sh) -c
+install_sh_SCRIPT = $(install_sh) -c
+INSTALL_HEADER = $(INSTALL_DATA)
+transform = $(program_transform_name)
+NORMAL_INSTALL = :
+PRE_INSTALL = :
+POST_INSTALL = :
+NORMAL_UNINSTALL = :
+PRE_UNINSTALL = :
+POST_UNINSTALL = :
+build_triplet = i386-apple-darwin11.2.0
+host_triplet = i386-apple-darwin11.2.0
+target_triplet = i386-apple-darwin11.2.0
+subdir = src/m/utils/qmu
+DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
+ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
+am__aclocal_m4_deps = $(top_srcdir)/m4/issm_options.m4 \
+	$(top_srcdir)/m4/matlab.m4 $(top_srcdir)/configure.ac
+am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
+	$(ACLOCAL_M4)
+mkinstalldirs = $(install_sh) -d
+CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_CLEAN_FILES =
+am__installdirs = "$(DESTDIR)$(bindir)"
+binSCRIPT_INSTALL = $(INSTALL_SCRIPT)
+SCRIPTS = $(bin_SCRIPTS)
+SOURCES =
+DIST_SOURCES =
+DISTFILES = $(DIST_COMMON) $(DIST_SOURCES) $(TEXINFOS) $(EXTRA_DIST)
+ACLOCAL = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run aclocal-1.10
+ADIC2INCL = 
+ADIC2LIB = 
+AMTAR = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run tar
+AUTOCONF = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoconf
+AUTOHEADER = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run autoheader
+AUTOMAKE = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run automake-1.10
+AWK = awk
+BLACSINCL = 
+BLACSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lblacs
+BLASLAPACKINCL = 
+BLASLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install -lflapack -lfblas 
+CC = gcc
+CCDEPMODE = depmode=gcc3
+CFLAGS = -g -O2
+CHACOINCL = 
+CHACOLIB = 
+CPP = gcc -E
+CPPFLAGS = 
+CXX = g++
+CXXDEPMODE = depmode=gcc3
+CXXFLAGS = -g -O2
+CXXOPTFLAGS =  -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w 
+CYGPATH_W = echo
+DAKOTAINCL = 
+DAKOTALIB = 
+DEFS = -DHAVE_CONFIG_H
+DEPDIR = .deps
+ECHO_C = 
+ECHO_N = -n
+ECHO_T = 
+EXEEXT = 
+F77 = gfortran
+FFLAGS = -g -O2
+FLIBS =  -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2 -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin11/4.6.2/../../.. -lgfortran -lquadmath -lm
+FORTRANLIB = /usr/local/lib/libgfortran.a
+GRAPHICSLIB = /usr/X11/lib/libX11.dylib
+HYPREINCL = 
+HYPRELIB = 
+INSTALL = /usr/bin/install -c
+INSTALL_DATA = ${INSTALL} -m 644
+INSTALL_PROGRAM = ${INSTALL}
+INSTALL_SCRIPT = ${INSTALL}
+INSTALL_STRIP_PROGRAM = $(install_sh) -c -s
+LDFLAGS = 
+LIBOBJS = 
+LIBS = 
+LTLIBOBJS = 
+MAKEINFO = ${SHELL} /Users/larour/issm-uci/trunk-jpl/missing --run makeinfo
+MATHLIB = /usr/lib/libm.dylib
+MATLAB = /Users/larour/issm-uci/trunk-jpl/externalpackages/matlab/install
+MATLABINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/include
+MATLAB_MAJOR = 7
+MATLAB_MINOR = 10
+MATLAB_VERSION = R2010a
+METISINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/Lib
+METISLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/metis/install/ -lmetis
+MEX = 
+MEXEXT = .mexmaci64
+MEXLIB =  mexversion.o -L/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/bin/maci/ -lmx -lmex -lmat -lstdc++ -largeArrayDims
+MEXLINK = -O -Wl,-flat_namespace -undefined suppress -bundle -Wl,-exported_symbols_list,/Users/larour/issm-uci//trunk-jpl/externalpackages/matlab/install/extern/lib/maci64/mexFunction.map
+MKDIR_P = ../../../.././install-sh -c -d
+MKLINCL = 
+MKLLIB = 
+MLINCL = 
+MLLIB = 
+MPIINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/include/
+MPILIB =  /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libpmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpich.a /Users/larour/issm-uci//trunk-jpl/externalpackages/mpich2/install/lib/libmpl.a 
+MULTITHREADINGLIB = -lpthread
+MUMPSINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//include
+MUMPSLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install//lib -ldmumps -lcmumps  -lmumps_common -lpord -lparmetis
+OBJEXT = o
+PACKAGE = issm
+PACKAGE_BUGREPORT = issm@jpl.nasa.gov
+PACKAGE_NAME = ISSM
+PACKAGE_STRING = ISSM 4.0
+PACKAGE_TARNAME = issm
+PACKAGE_VERSION = 4.0
+PATH_SEPARATOR = :
+PETSCINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/macosx-gnu/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/bmake/macosx-gnu -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/src/mat/impls/dense/mpi/plapack/
+PETSCLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/macosx-gnu/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu/ -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/lib/macosx-gnu -lpetsc
+PLAPACKINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/include/ 
+PLAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install/ -lPLAPACK
+RANLIB = ranlib
+ROSEINCL = 
+ROSELIB = 
+SCALAPACKLIB = -L/Users/larour/issm-uci//trunk-jpl/externalpackages/petsc/install// -lscalapack
+SCOTCHINCL = 
+SCOTCHLIB = 
+SET_MAKE = 
+SHAPELIBINCL = 
+SHAPELIBLIB = 
+SHELL = /bin/sh
+SLEPCINCL = 
+SLEPCLIB = 
+STRIP = 
+TAOINCL = 
+TAOLIB = 
+TRIANGLEINCL = -I/Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/
+TRIANGLELIB = /Users/larour/issm-uci//trunk-jpl/externalpackages/triangle/install/triangle.a
+VERSION = 4.0
+XMKMF = 
+X_CFLAGS = 
+X_EXTRA_LIBS = 
+X_LIBS =  -L/usr/X11/lib -R/usr/X11/lib
+X_PRE_LIBS =  -lSM -lICE
+abs_builddir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/qmu
+abs_srcdir = /Users/larour/issm-uci/trunk-jpl/src/m/utils/qmu
+abs_top_builddir = /Users/larour/issm-uci/trunk-jpl
+abs_top_srcdir = /Users/larour/issm-uci/trunk-jpl
+ac_ct_CC = gcc
+ac_ct_CXX = g++
+ac_ct_F77 = gfortran
+am__include = include
+am__leading_dot = .
+am__quote = 
+am__tar = ${AMTAR} chof - "$$tardir"
+am__untar = ${AMTAR} xf -
+bindir = ${exec_prefix}/bin
+build = i386-apple-darwin11.2.0
+build_alias = 
+build_cpu = i386
+build_os = darwin11.2.0
+build_vendor = apple
+builddir = .
+datadir = ${datarootdir}
+datarootdir = ${prefix}/share
+docdir = ${datarootdir}/doc/${PACKAGE_TARNAME}
+dvidir = ${docdir}
+exec_prefix = ${prefix}
+host = i386-apple-darwin11.2.0
+host_alias = 
+host_cpu = i386
+host_os = darwin11.2.0
+host_vendor = apple
+htmldir = ${docdir}
+includedir = ${prefix}/include
+infodir = ${datarootdir}/info
+install_sh = $(SHELL) /Users/larour/issm-uci/trunk-jpl/install-sh
+libdir = ${exec_prefix}/lib
+libexecdir = ${exec_prefix}/libexec
+localedir = ${datarootdir}/locale
+localstatedir = ${prefix}/var
+mandir = ${datarootdir}/man
+mkdir_p = $(top_builddir)/./install-sh -c -d
+oldincludedir = /usr/include
+pdfdir = ${docdir}
+prefix = /Users/larour/issm-uci//trunk-jpl
+program_transform_name = s,x,x,
+psdir = ${docdir}
+sbindir = ${exec_prefix}/sbin
+sharedstatedir = ${prefix}/com
+srcdir = .
+sysconfdir = ${prefix}/etc
+target = i386-apple-darwin11.2.0
+target_alias = 
+target_cpu = i386
+target_os = darwin11.2.0
+target_vendor = apple
+top_build_prefix = ../../../../
+top_builddir = ../../../..
+top_srcdir = ../../../..
+bin_SCRIPTS = *.m 
+all: all-am
+
+.SUFFIXES:
+$(srcdir)/Makefile.in:  $(srcdir)/Makefile.am  $(am__configure_deps)
+	@for dep in $?; do \
+	  case '$(am__configure_deps)' in \
+	    *$$dep*) \
+	      ( cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh ) \
+	        && { if test -f $@; then exit 0; else break; fi; }; \
+	      exit 1;; \
+	  esac; \
+	done; \
+	echo ' cd $(top_srcdir) && $(AUTOMAKE) --gnu  src/m/utils/qmu/Makefile'; \
+	cd $(top_srcdir) && \
+	  $(AUTOMAKE) --gnu  src/m/utils/qmu/Makefile
+.PRECIOUS: Makefile
+Makefile: $(srcdir)/Makefile.in $(top_builddir)/config.status
+	@case '$?' in \
+	  *config.status*) \
+	    cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh;; \
+	  *) \
+	    echo ' cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe)'; \
+	    cd $(top_builddir) && $(SHELL) ./config.status $(subdir)/$@ $(am__depfiles_maybe);; \
+	esac;
+
+$(top_builddir)/config.status: $(top_srcdir)/configure $(CONFIG_STATUS_DEPENDENCIES)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+
+$(top_srcdir)/configure:  $(am__configure_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+$(ACLOCAL_M4):  $(am__aclocal_m4_deps)
+	cd $(top_builddir) && $(MAKE) $(AM_MAKEFLAGS) am--refresh
+install-binSCRIPTS: $(bin_SCRIPTS)
+	@$(NORMAL_INSTALL)
+	test -z "$(bindir)" || $(MKDIR_P) "$(DESTDIR)$(bindir)"
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  if test -f "$$p"; then d=; else d="$(srcdir)/"; fi; \
+	  if test -f $$d$$p; then \
+	    f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	    echo " $(binSCRIPT_INSTALL) '$$d$$p' '$(DESTDIR)$(bindir)/$$f'"; \
+	    $(binSCRIPT_INSTALL) "$$d$$p" "$(DESTDIR)$(bindir)/$$f"; \
+	  else :; fi; \
+	done
+
+uninstall-binSCRIPTS:
+	@$(NORMAL_UNINSTALL)
+	@list='$(bin_SCRIPTS)'; for p in $$list; do \
+	  f=`echo "$$p" | sed 's|^.*/||;$(transform)'`; \
+	  echo " rm -f '$(DESTDIR)$(bindir)/$$f'"; \
+	  rm -f "$(DESTDIR)$(bindir)/$$f"; \
+	done
+tags: TAGS
+TAGS:
+
+ctags: CTAGS
+CTAGS:
+
+
+distdir: $(DISTFILES)
+	@srcdirstrip=`echo "$(srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	topsrcdirstrip=`echo "$(top_srcdir)" | sed 's/[].[^$$\\*]/\\\\&/g'`; \
+	list='$(DISTFILES)'; \
+	  dist_files=`for file in $$list; do echo $$file; done | \
+	  sed -e "s|^$$srcdirstrip/||;t" \
+	      -e "s|^$$topsrcdirstrip/|$(top_builddir)/|;t"`; \
+	case $$dist_files in \
+	  */*) $(MKDIR_P) `echo "$$dist_files" | \
+			   sed '/\//!d;s|^|$(distdir)/|;s,/[^/]*$$,,' | \
+			   sort -u` ;; \
+	esac; \
+	for file in $$dist_files; do \
+	  if test -f $$file || test -d $$file; then d=.; else d=$(srcdir); fi; \
+	  if test -d $$d/$$file; then \
+	    dir=`echo "/$$file" | sed -e 's,/[^/]*$$,,'`; \
+	    if test -d $(srcdir)/$$file && test $$d != $(srcdir); then \
+	      cp -pR $(srcdir)/$$file $(distdir)$$dir || exit 1; \
+	    fi; \
+	    cp -pR $$d/$$file $(distdir)$$dir || exit 1; \
+	  else \
+	    test -f $(distdir)/$$file \
+	    || cp -p $$d/$$file $(distdir)/$$file \
+	    || exit 1; \
+	  fi; \
+	done
+check-am: all-am
+check: check-am
+all-am: Makefile $(SCRIPTS)
+installdirs:
+	for dir in "$(DESTDIR)$(bindir)"; do \
+	  test -z "$$dir" || $(MKDIR_P) "$$dir"; \
+	done
+install: install-am
+install-exec: install-exec-am
+install-data: install-data-am
+uninstall: uninstall-am
+
+install-am: all-am
+	@$(MAKE) $(AM_MAKEFLAGS) install-exec-am install-data-am
+
+installcheck: installcheck-am
+install-strip:
+	$(MAKE) $(AM_MAKEFLAGS) INSTALL_PROGRAM="$(INSTALL_STRIP_PROGRAM)" \
+	  install_sh_PROGRAM="$(INSTALL_STRIP_PROGRAM)" INSTALL_STRIP_FLAG=-s \
+	  `test -z '$(STRIP)' || \
+	    echo "INSTALL_PROGRAM_ENV=STRIPPROG='$(STRIP)'"` install
+mostlyclean-generic:
+
+clean-generic:
+
+distclean-generic:
+	-test -z "$(CONFIG_CLEAN_FILES)" || rm -f $(CONFIG_CLEAN_FILES)
+
+maintainer-clean-generic:
+	@echo "This command is intended for maintainers to use"
+	@echo "it deletes files that may require special tools to rebuild."
+clean: clean-am
+
+clean-am: clean-generic mostlyclean-am
+
+distclean: distclean-am
+	-rm -f Makefile
+distclean-am: clean-am distclean-generic
+
+dvi: dvi-am
+
+dvi-am:
+
+html: html-am
+
+info: info-am
+
+info-am:
+
+install-data-am:
+
+install-dvi: install-dvi-am
+
+install-exec-am: install-binSCRIPTS
+
+install-html: install-html-am
+
+install-info: install-info-am
+
+install-man:
+
+install-pdf: install-pdf-am
+
+install-ps: install-ps-am
+
+installcheck-am:
+
+maintainer-clean: maintainer-clean-am
+	-rm -f Makefile
+maintainer-clean-am: distclean-am maintainer-clean-generic
+
+mostlyclean: mostlyclean-am
+
+mostlyclean-am: mostlyclean-generic
+
+pdf: pdf-am
+
+pdf-am:
+
+ps: ps-am
+
+ps-am:
+
+uninstall-am: uninstall-binSCRIPTS
+
+.MAKE: install-am install-strip
+
+.PHONY: all all-am check check-am clean clean-generic distclean \
+	distclean-generic distdir dvi dvi-am html html-am info info-am \
+	install install-am install-binSCRIPTS install-data \
+	install-data-am install-dvi install-dvi-am install-exec \
+	install-exec-am install-html install-html-am install-info \
+	install-info-am install-man install-pdf install-pdf-am \
+	install-ps install-ps-am install-strip installcheck \
+	installcheck-am installdirs maintainer-clean \
+	maintainer-clean-generic mostlyclean mostlyclean-generic pdf \
+	pdf-am ps ps-am uninstall uninstall-am uninstall-binSCRIPTS
+
+# Tell versions [3.59,3.63) of GNU make to not export all variables.
+# Otherwise a system limit (for SysV at least) may be exceeded.
+.NOEXPORT:
Index: /issm/trunk-jpl/src/m/utils/qmu/Makefile.am
===================================================================
--- /issm/trunk-jpl/src/m/utils/qmu/Makefile.am	(revision 11472)
+++ /issm/trunk-jpl/src/m/utils/qmu/Makefile.am	(revision 11472)
@@ -0,0 +1,1 @@
+bin_SCRIPTS=*.m 
