Index: /issm/trunk-jpl/configs/config-altix64-castor.sh
===================================================================
--- /issm/trunk-jpl/configs/config-altix64-castor.sh	(revision 11174)
+++ /issm/trunk-jpl/configs/config-altix64-castor.sh	(revision 11174)
@@ -0,0 +1,3 @@
+#!/bin/csh
+
+./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/usr/include  --with-mpi-lib="-L/usr/lib -lmpi" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-mkl-dir=/opt/intel/mkl/9.1.023/lib/64 --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-graphics-lib=/usr/X11R6/lib/libX11.so
Index: /issm/trunk-jpl/configs/config-cosmos.sh
===================================================================
--- /issm/trunk-jpl/configs/config-cosmos.sh	(revision 11174)
+++ /issm/trunk-jpl/configs/config-cosmos.sh	(revision 11174)
@@ -0,0 +1,3 @@
+#!/bin/csh
+
+./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/opt/mpich/gm/intel10.1/include  --with-mpi-lib="-L/opt/mpich/gm/intel10.1/lib -lmpich -L/usr/local/gm/lib/ -lgm  -lpthread  -lrt" --with-petsc-arch=$ISSM_ARCH --with-mkl-dir=/opt/intel/mkl/10.0.5.025/lib/32/  --with-plapack-dir="-L$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH  --with-vendor=intel-linux --with-graphics-lib=/usr/X11R6/lib/libX11.so
Index: /issm/trunk-jpl/configs/config-linux64-astrid-ad.sh
===================================================================
--- /issm/trunk-jpl/configs/config-linux64-astrid-ad.sh	(revision 11174)
+++ /issm/trunk-jpl/configs/config-linux64-astrid-ad.sh	(revision 11174)
@@ -0,0 +1,36 @@
+#!/bin/sh
+
+./configure \
+ --prefix=$ISSM_TIER \
+ --with-serial=no\
+ --with-metis-dir=$ISSM_TIER/externalpackages/metis/install \
+ --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install \
+ --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include  \
+ --with-mpi-lib="-L$ISSM_TIER/externalpackages/mpich2/install/lib/ -lmpich" \
+ --with-petsc-arch=$ISSM_ARCH \
+ --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install \
+ --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/ -lPLAPACK" \
+ --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/INCLUDE" \
+ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-graphics-lib=/usr/lib64/libX11.so \
+ --with-cxxoptflags="-march=opteron -O2" \
+ --with-fortran-lib="-L/usr/lib/gcc/x86_64-redhat-linux/4.1.1/ -lgfortran" \
+ --with-rose-dir=$ISSM_TIER/externalpackages/rose/install/ \
+ --with-adic2-dir=$ISSM_TIER/externalpackages/adic/install/ \
+ --with-numthreads=24 \
+ --without-thermal \
+ --without-control \
+ --without-hydrology \
+ --without-diagnostic \
+ --without-balanced \
+ --without-responses \
+ --without-slope \
+ --without-rifts \
+ --without-steadystate \
+ --without-transient \
+ --without-3d \
+ --without-groundingline
+ 
+#--without-prognostic \
Index: /issm/trunk-jpl/configs/config-linux64-astrid-petsc2.sh
===================================================================
--- /issm/trunk-jpl/configs/config-linux64-astrid-petsc2.sh	(revision 11174)
+++ /issm/trunk-jpl/configs/config-linux64-astrid-petsc2.sh	(revision 11174)
@@ -0,0 +1,7 @@
+#!/bin/sh
+
+#External packages versions:
+#petsc 2.6
+#mpich 1.0.2
+
+./configure --prefix=$ISSM_TIER --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include  --with-mpi-lib="-L$ISSM_TIER/externalpackages/mpich2/install/lib/ -lmpich" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH --with-fortran-lib="-L/usr/lib/gcc/x86_64-redhat-linux/4.1.1/ -lgfortran" --with-graphics-lib=/usr/lib64/libX11.so --with-cxxoptflags="-march=opteron -O2" --with-numthreads=32 --with-scotch-dir=$ISSM_TIER/externalpackages/scotch/install --with-chaco-dir=$ISSM_TIER/externalpackages/chaco/install --enable-debugging --with-shapelib-dir=$ISSM_TIER/externalpackages/shapelib/install\
Index: /issm/trunk-jpl/configs/config-linux64-astrid.sh
===================================================================
--- /issm/trunk-jpl/configs/config-linux64-astrid.sh	(revision 11174)
+++ /issm/trunk-jpl/configs/config-linux64-astrid.sh	(revision 11174)
@@ -0,0 +1,31 @@
+#!/bin/sh
+
+#External packages versions:
+#petsc 3.1 or 3.2
+#mpich 1.0.2
+
+./configure \
+ --prefix=$ISSM_TIER \
+ --with-matlab-dir=$MATLAB_DIR \
+ --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install \
+ --with-metis-dir=$ISSM_TIER/externalpackages/metis/install \
+ --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install \
+ --with-tao-dir=$ISSM_TIER/externalpackages/tao/install \
+ --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include  \
+ --with-mpi-lib="-L$ISSM_TIER/externalpackages/mpich2/install/lib/ -lmpich " \
+ --with-petsc-arch=$ISSM_ARCH \
+ --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install \
+ --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install \
+ --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/ -lPLAPACK" \
+ --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/INCLUDE" \
+ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-scotch-dir="$ISSM_TIER/externalpackages/scotch/install" \
+ --with-chaco-dir="$ISSM_TIER/externalpackages/chaco/install" \
+ --with-shapelib-dir="$ISSM_TIER/externalpackages/shapelib/install" \
+ --with-fortran-lib="-L/usr/lib/gcc/x86_64-redhat-linux/4.1.1/ -lgfortran" \
+ --with-graphics-lib=/usr/lib64/libX11.so \
+ --with-cxxoptflags="-march=opteron -O2" \
+ --with-numthreads=32 \
+ --enable-debugging
Index: /issm/trunk-jpl/configs/config-linux64-murdo-ad.sh
===================================================================
--- /issm/trunk-jpl/configs/config-linux64-murdo-ad.sh	(revision 11174)
+++ /issm/trunk-jpl/configs/config-linux64-murdo-ad.sh	(revision 11174)
@@ -0,0 +1,37 @@
+#!/bin/sh
+
+./configure \
+ --prefix=$ISSM_TIER \
+ --with-serial=no\
+ --with-metis-dir=$ISSM_TIER/externalpackages/metis/install \
+ --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install \
+ --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include  \
+ --with-mpi-lib="-L$ISSM_TIER/externalpackages/mpich2/install/lib/ -lmpich" \
+ --with-petsc-arch=$ISSM_ARCH \
+ --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install \
+ --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/ -lPLAPACK" \
+ --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/INCLUDE" \
+ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-hypre-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-ml-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-graphics-lib=/usr/lib64/libX11.so \
+ --with-cxxoptflags="-mtune=barcelona -ffast-math -O3 -msse4.2 -Wno-write-strings "\
+ --with-fortran-lib="-L/usr/lib/gcc/x86_64-redhat-linux/3.4.6/ -lg2c  /usr/lib/gcc/x86_64-redhat-linux/4.1.1/libgfortran.a" \
+ --with-adic2-dir=$ISSM_TIER/externalpackages/adic/install/ \
+--with-numthreads=24 \
+ --without-thermal \
+ --without-control \
+ --without-hydrology \
+ --without-diagnostic \
+ --without-balanced \
+ --without-responses \
+ --without-slope \
+ --without-rifts \
+ --without-steadystate \
+ --without-transient \
+ --without-3d \
+ --without-groundingline
+ 
+#--without-prognostic \
Index: /issm/trunk-jpl/configs/config-linux64-murdo.sh
===================================================================
--- /issm/trunk-jpl/configs/config-linux64-murdo.sh	(revision 11174)
+++ /issm/trunk-jpl/configs/config-linux64-murdo.sh	(revision 11174)
@@ -0,0 +1,28 @@
+#!/bin/sh
+
+./configure \
+ --prefix=$ISSM_TIER \
+ --with-matlab-dir=$MATLAB_DIR \
+ --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install \
+ --with-metis-dir=$ISSM_TIER/externalpackages/metis/install \
+ --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install \
+ --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include  \
+ --with-mpi-lib="-L$ISSM_TIER/externalpackages/mpich2/install/lib/ -lmpich" \
+ --with-petsc-arch=$ISSM_ARCH \
+ --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install \
+ --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/ -lPLAPACK" \
+ --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/INCLUDE" \
+ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-scotch-dir="$ISSM_TIER/externalpackages/scotch/install" \
+ --with-chaco-dir="$ISSM_TIER/externalpackages/chaco/install" \
+ --with-graphics-lib=/usr/lib64/libX11.so \
+ --with-cxxoptflags="-mtune=barcelona -ffast-math -O3 -msse4.2 -Wno-write-strings "\
+ --with-numthreads=18 \
+ --with-ml-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-hypre-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --enable-debugging
+ 
+ #--with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install \
+ 
Index: /issm/trunk-jpl/configs/config-macosx32-mathieu.sh
===================================================================
--- /issm/trunk-jpl/configs/config-macosx32-mathieu.sh	(revision 11174)
+++ /issm/trunk-jpl/configs/config-macosx32-mathieu.sh	(revision 11174)
@@ -0,0 +1,31 @@
+#!/bin/sh
+
+#petsc 3.1 or 3.2
+#mpich 1.4
+
+export FCFLAGS=" -m32"
+export FFLAGS=" -m32"
+export CFLAGS=" -arch i386"
+export CXXFLAGS=" -arch i386"
+
+./configure \
+	--prefix=$ISSM_TIER \
+	--with-matlab-dir=$MATLAB_DIR \
+	--with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install \
+	--with-metis-dir=$ISSM_TIER/externalpackages/metis/install \
+	--with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install  \
+	--with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include  \
+	--with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpl.a " \
+	--with-petsc-arch=$ISSM_ARCH \
+	--with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install \
+	--with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install \
+	--with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/ -lPLAPACK" \
+	--with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/include/ " \
+	--with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+	--with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+	--with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+	--with-fortran-lib="/usr/local/lib/libgfortran.a" \
+	--with-math-lib="/usr/lib/libm.dylib" \
+	--with-graphics-lib="/usr/X11/lib/libX11.dylib" \
+	--with-cxxoptflags=" -DMATLAB_MEX_FILE -fno-common -no-cpp-precomp -fexceptions -arch i386  -DMX_COMPAT_32 -O3 -DNDEBUG -w " \
+	--with-numthreads=8
Index: /issm/trunk-jpl/configs/config-macosx32-ogive.sh
===================================================================
--- /issm/trunk-jpl/configs/config-macosx32-ogive.sh	(revision 11174)
+++ /issm/trunk-jpl/configs/config-macosx32-ogive.sh	(revision 11174)
@@ -0,0 +1,26 @@
+#!/bin/sh
+
+#petsc 3.1 or 3.2
+#mpich 1.4
+
+./configure \
+	--prefix=$ISSM_TIER \
+	--with-matlab-dir=$MATLAB_DIR \
+	--with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install \
+	--with-metis-dir=$ISSM_TIER/externalpackages/metis/install \
+	--with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install  \
+	--with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include  \
+	--with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpl.a " \
+	--with-petsc-arch=$ISSM_ARCH \
+	--with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install \
+	--with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install \
+	--with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/ -lPLAPACK" \
+	--with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/include/ " \
+	--with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+	--with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+	--with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+	--with-fortran-lib="/usr/local/gfortran/lib/libgfortran.a" \
+	--with-math-lib="/usr/lib/libm.dylib" \
+	--with-graphics-lib="/usr/X11/lib/libX11.dylib" \
+	--with-cxxoptflags=" -fno-common -no-cpp-precomp -fexceptions -arch i386 -g -O3 -DNDEBUG -DMX_COMPAT_32" \
+	--with-numthreads=8
Index: /issm/trunk-jpl/configs/config-macosx64-mathieu.sh
===================================================================
--- /issm/trunk-jpl/configs/config-macosx64-mathieu.sh	(revision 11174)
+++ /issm/trunk-jpl/configs/config-macosx64-mathieu.sh	(revision 11174)
@@ -0,0 +1,26 @@
+#!/bin/sh
+
+#petsc 3.2
+#mpich 1.4
+
+./configure \
+	--prefix=$ISSM_TIER \
+	--with-matlab-dir=$MATLAB_DIR \
+	--with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install \
+	--with-metis-dir=$ISSM_TIER/externalpackages/metis/install \
+	--with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install  \
+	--with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include  \
+	--with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpl.a " \
+	--with-petsc-arch=$ISSM_ARCH \
+	--with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install \
+	--with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install \
+	--with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/ -lPLAPACK" \
+	--with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/include/ " \
+	--with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+	--with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+	--with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+	--with-fortran-lib="/usr/local/lib/libgfortran.a" \
+	--with-math-lib="/usr/lib/libm.dylib" \
+	--with-graphics-lib="/usr/X11/lib/libX11.dylib" \
+	--with-cxxoptflags=" -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w "\
+	--with-numthreads=8
Index: /issm/trunk-jpl/configs/config-macosx64-ogive.sh
===================================================================
--- /issm/trunk-jpl/configs/config-macosx64-ogive.sh	(revision 11174)
+++ /issm/trunk-jpl/configs/config-macosx64-ogive.sh	(revision 11174)
@@ -0,0 +1,31 @@
+#!/bin/sh
+
+#petsc 3.2
+#mpich 1.4
+export FCFLAGS=" -m64"
+export FFLAGS=" -m64"
+export CFLAGS=" -arch x86_64"
+export CXXFLAGS=" -arch x86_64"
+
+./configure \
+	--prefix=$ISSM_TIER \
+	--with-matlab-dir=$MATLAB_DIR \
+	--with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install \
+	--with-metis-dir=$ISSM_TIER/externalpackages/metis/install \
+	--with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install  \
+	--with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include  \
+	--with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpl.a " \
+	--with-petsc-arch=$ISSM_ARCH \
+	--with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install \
+	--with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install \
+	--with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/ -lPLAPACK" \
+	--with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/include/ " \
+	--with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+	--with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+	--with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+	--with-fortran-lib="/usr/local/gfortran/lib/x86_64/libgfortran.a" \
+	--with-math-lib="/usr/lib/libm.dylib" \
+	--with-graphics-lib="/usr/X11/lib/libX11.dylib" \
+	--with-cxxoptflags=" -fno-common -no-cpp-precomp -fexceptions -arch x86_64 -mmacosx-version-min=10.5  -O3 -DNDEBUG -w "\
+	--with-numthreads=8
+	#--with-fortran-lib="/usr/local/gfortran/lib/libgfortran.a" \
Index: /issm/trunk-jpl/configs/config-macosx64-sophie.sh
===================================================================
--- /issm/trunk-jpl/configs/config-macosx64-sophie.sh	(revision 11174)
+++ /issm/trunk-jpl/configs/config-macosx64-sophie.sh	(revision 11174)
@@ -0,0 +1,30 @@
+#!/bin/sh
+
+#petsc 3.2
+#mpich 1.4
+export FCFLAGS=" -m64"
+export FFLAGS=" -m64"
+export CFLAGS=" -arch x86_64"
+export CXXFLAGS=" -arch x86_64"
+
+./configure \
+	--prefix=$ISSM_TIER \
+	--with-matlab-dir=$MATLAB_DIR \
+	--with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install \
+	--with-metis-dir=$ISSM_TIER/externalpackages/metis/install \
+	--with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install  \
+	--with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include  \
+	--with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpl.a " \
+	--with-petsc-arch=$ISSM_ARCH \
+	--with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install \
+	--with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install \
+	--with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/ -lPLAPACK" \
+	--with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/include/ " \
+	--with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+	--with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+	--with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+	--with-fortran-lib="/sw/usr/local/lib/x86_64/libgfortran.a" \
+	--with-math-lib="/usr/lib/libm.dylib" \
+	--with-graphics-lib="/usr/X11/lib/libX11.dylib" \
+	--with-cxxoptflags=" -fno-common -Wno-write-strings -no-cpp-precomp -fexceptions -arch x86_64 -O3 -DNDEBUG -w "\
+	--with-numthreads=8
Index: /issm/trunk-jpl/configs/config-pleiades-petsc2.sh
===================================================================
--- /issm/trunk-jpl/configs/config-pleiades-petsc2.sh	(revision 11174)
+++ /issm/trunk-jpl/configs/config-pleiades-petsc2.sh	(revision 11174)
@@ -0,0 +1,21 @@
+#!/bin/csh
+
+./configure \
+ --prefix=$ISSM_TIER \
+ --with-serial=no \
+ --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install \
+ --with-metis-dir=$ISSM_TIER/externalpackages/metis/install \
+ --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install \
+ --with-mpi-include=/nasa/sgi/mpt/1.25/include \
+ --with-mpi-lib="-L/nasa/sgi/mpt/1.25/lib/ -lmpi -lpthread -lgfortran" \
+ --with-petsc-arch=$ISSM_ARCH \
+ --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install \
+ --with-mkl-dir=/nasa/intel/mkl/10.0.011/lib/64/ \
+ --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/ -lPLAPACK" \
+ --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/INCLUDE" \
+ --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-graphics-lib=/usr/lib64/libX11.so \
+ --with-cxxoptflags="-O3 -xS" \
+ --with-vendor=intel-pleiades
Index: /issm/trunk-jpl/configs/config-pleiades.sh
===================================================================
--- /issm/trunk-jpl/configs/config-pleiades.sh	(revision 11174)
+++ /issm/trunk-jpl/configs/config-pleiades.sh	(revision 11174)
@@ -0,0 +1,21 @@
+#!/bin/csh
+
+./configure \
+ --prefix=$ISSM_TIER \
+ --with-serial=no \
+ --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install \
+ --with-metis-dir=$ISSM_TIER/externalpackages/metis/install \
+ --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install \
+ --with-mpi-include=/nasa/sgi/mpt/1.25/include \
+ --with-mpi-lib="-L/nasa/sgi/mpt/1.25/lib/ -lmpi -lpthread -lgfortran" \
+ --with-petsc-arch=$ISSM_ARCH \
+ --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install \
+ --with-mkl-dir=/nasa/intel/mkl/10.0.011/lib/64/ \
+ --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/ -lPLAPACK" \
+ --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/INCLUDE" \
+ --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/ \
+ --with-graphics-lib=/usr/lib64/libX11.so \
+ --with-cxxoptflags="-O3 -xS" \
+ --with-vendor=intel-pleiades
Index: /issm/trunk-jpl/configs/config-win32-eric.sh
===================================================================
--- /issm/trunk-jpl/configs/config-win32-eric.sh	(revision 11174)
+++ /issm/trunk-jpl/configs/config-win32-eric.sh	(revision 11174)
@@ -0,0 +1,6 @@
+#!/bin/sh
+
+
+#get configure.sh to pick up the intel compiler 
+
+./configure --prefix=$ISSM_TIER --with-parallel=no --with-vendor=intel-win  --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install  --with-petsc-arch=$ISSM_ARCH  --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/f2cblaslapack/$ISSM_ARCH