Index: issm/trunk-jpl/AUTHORS
===================================================================
--- issm/trunk-jpl/AUTHORS	(revision 11024)
+++ issm/trunk-jpl/AUTHORS	(revision 11026)
@@ -8,6 +8,21 @@
    Eric Larour <eric.larour@jpl.nasa.gov>
 
-Current developers:
+Current core developers:
    * Eric Larour <eric.larour@jpl.nasa.gov>
 	* Helene Seroussi <helene.seroussi@jpl.nasa.gov>
    * Mathieu Morlighem <mathieu.morlighem@jpl.nasa.gov>
+
+
+Contributors:
+	We thank the following contributors for their help in making ISSM better!
+
+	Robert Crippen, Jet Propulsion Laboratory.  robbert.crippen@jpl.nasa.gov
+	HoleFiller routines to plug incomplete datasets. See HoleFiller module in src/m/matlab/utils
+
+	Point Inclusion in Polygon Test (pnpoly.c used in Utils/Arguscontourtomesh/IsInPoly.c)
+	W. Randolph Franklin (WRF)
+	http://www.ecse.rpi.edu/Homepages/wrf/Research/Short_Notes/pnpoly.html
+
+	DACE: A Matlab Kriging toolbox, Søren N.Lophaen, Hans Bruun Nielsen and Jacob
+	Søndergaard (Technical University of Denmark)
+	http://www2.imm.dtu.dk/~hbn/dace/
Index: issm/trunk-jpl/ChangeLog
===================================================================
--- issm/trunk-jpl/ChangeLog	(revision 11024)
+++ issm/trunk-jpl/ChangeLog	(revision 11026)
@@ -1,2499 +1,3 @@
-2009-04-22 17:03  seroussi
+Go to
 
-	* test/Verification/: test1_icesheet_noicefront/Front.exp,
-	  test2_icesheet_icefront/Square.par,
-	  test3_iceshelf_icefront/Square.par,
-	  test4_icesheet_noicefront_3d/Front.exp,
-	  test5_icesheet_icefront_3d/Square.par,
-	  test6_iceshelf_icefront_3d/Square.par,
-	  test7_penalties_iceshelf_3d/Square.par,
-	  test8_icesheet_noicefront_stokes/Front.exp,
-	  test9_icesheet_icefront_stokes/Square.par,
-	  test10_iceshelf_icefront_stokes/Square.par,
-	  test11_penalties_iceshelf_allmodels/Square.par,
-	  test_cielo/Square.par: simplified Square.par in tests
-
-2009-04-22 16:00  seroussi
-
-	* src/m/classes/@model/model.m: minor
-
-2009-04-22 11:56  jschierm
-
-	* src/m/classes/public/displayqmu.m: Still trying to get displayqmu
-	  right.
-
-2009-04-22 09:57  jschierm
-
-	* src/m/classes/: @model/model.m, public/displayqmu.m: Slight
-	  changes in model class for qmu defaults..
-
-2009-04-22 09:26  morlighe
-
-	* src/m/classes/public/: plugdata.m, plugvelocities.m: minor
-
-2009-04-22 07:46  seroussi
-
-	* test/Verification/test5_icesheet_icefront_3d/: Square.par,
-	  archive_melting.mat, archive_melting_transient.mat,
-	  archive_pattyn.mat, archive_temperature.mat,
-	  archive_temperature_transient.mat, archive_thickness.mat: new
-	  archives for test5 with default parameters
-
-2009-04-22 07:24  seroussi
-
-	* test/Verification/test9_icesheet_icefront_stokes/:
-	  archive_melting.mat, archive_stokes.mat, archive_temperature.mat:
-	  test9 updated archives with default parameters
-
-2009-04-21 17:03  morlighe
-
-	* src/m/utils/BC/: SetIceSheetBC.m, SetIceShelfBC.m,
-	  SetMarineIceSheetBC.m: Added 2 other BC creation routines
-
-2009-04-21 16:53  seroussi
-
-	* test/Verification/test8_icesheet_noicefront_stokes/:
-	  archive_melting.mat, archive_stokes.mat, archive_temperature.mat:
-	  test8 updated archives with default parameters
-
-2009-04-21 16:50  seroussi
-
-	* test/Verification/test7_penalties_iceshelf_3d/:
-	  archive_melting.mat, archive_temperature.mat,
-	  archive_velocity.mat: test7 updated archives with default
-	  parameters
-
-2009-04-21 16:49  seroussi
-
-	* test/Verification/test6_iceshelf_icefront_3d/:
-	  archive_melting.mat, archive_melting_transient.mat,
-	  archive_pattyn.mat, archive_temperature.mat,
-	  archive_temperature_transient.mat, archive_thickness.mat: test6
-	  updated archives with default parameters
-
-2009-04-21 16:49  seroussi
-
-	* test/Verification/test4_icesheet_noicefront_3d/:
-	  archive_hutter.mat, archive_melting.mat, archive_pattyn.mat,
-	  archive_temperature.mat: test4 updated archives with default
-	  parameters
-
-2009-04-21 16:47  seroussi
-
-	* test/Verification/test3_iceshelf_icefront/: archive_acc.mat,
-	  archive_ice.mat, archive_macayeal.mat, archive_thickness.mat:
-	  test3 archives with default parameters
-
-2009-04-21 16:45  seroussi
-
-	* test/Verification/test3_iceshelf_icefront/Square.par: minor
-
-2009-04-21 16:18  morlighe
-
-	* src/m/classes/public/plugvelocities.m: minor
-
-2009-04-21 16:11  seroussi
-
-	* src/m/classes/public/ismodelselfconsistent.m: minor
-
-2009-04-21 16:09  morlighe
-
-	* src/m/classes/public/parameterize.m: better error message
-
-2009-04-21 15:52  jschierm
-
-	* src/m/classes/: @model/model.m, public/displayqmu.m: Elimination
-	  of qmu parameters that will be contained within qmu_params
-	  structure.
-
-2009-04-21 15:36  morlighe
-
-	* src/m/classes/public/: plugdata.m, plugvelocities.m: Added 2
-	  useful routines to load data and plug them onto the model easily
-	  (cf Eric Rignot's comments)
-
-2009-04-21 15:23  jschierm
-
-	* src/m/solutions/dakota/: dakota_in_data.m, dakota_in_write.m,
-	  dakota_m_write.m, setupdesign/QmuSetupDesign.m,
-	  setupdesign/setupdrag.m, setupdesign/setupgravity.m,
-	  setupdesign/setupheatcapacity.m, setupdesign/setuprhoice.m,
-	  setupdesign/setuprhowater.m, setupdesign/setupriftsfriction.m,
-	  setupdesign/setupthermalconductivity.m,
-	  setupdesign/setupthickness.m,
-	  updatefunctions/QmuUpdateFunctions.m,
-	  updatefunctions/updatedrag.m, updatefunctions/updategravity.m,
-	  updatefunctions/updateheatcapacity.m,
-	  updatefunctions/updaterho_ice.m,
-	  updatefunctions/updaterho_water.m,
-	  updatefunctions/updateriftsfriction.m,
-	  updatefunctions/updatethermalconductivity.m,
-	  updatefunctions/updatethickness.m: Addition of varargin so that
-	  ISSM can pass model and other data transparently through Dakota
-	  scripts to QmuSetupDesign and QmuUpdateFunctions.
-
-2009-04-21 15:01  seroussi
-
-	* src/m/classes/public/ismodelselfconsistent.m: minor typo
-
-2009-04-21 14:58  seroussi
-
-	* test/Verification/test11_penalties_iceshelf_allmodels/:
-	  Square.par, archive_melting.mat, archive_temperature.mat,
-	  archive_velocity.mat: test11 archives + beginning of Square.par
-
-2009-04-21 14:58  seroussi
-
-	* test/Verification/test10_iceshelf_icefront_stokes/: Square.par,
-	  archive_melting.mat, archive_stokes.mat, archive_temperature.mat:
-	  test10 archives + beginning of Square.par
-
-2009-04-21 14:56  seroussi
-
-	* test/Verification/: test3_iceshelf_icefront/Square.par,
-	  test5_icesheet_icefront_3d/Square.par,
-	  test6_iceshelf_icefront_3d/Square.par,
-	  test7_penalties_iceshelf_3d/Square.par,
-	  test9_icesheet_icefront_stokes/Square.par: beginning of
-	  Square.par
-
-2009-04-21 14:55  seroussi
-
-	* test/Verification/test2_icesheet_icefront/: Square.par,
-	  archive_acc.mat, archive_hutter.mat, archive_ice.mat,
-	  archive_macayeal.mat, archive_thickness.mat: test2 archives +
-	  beginning of Square.par
-
-2009-04-21 14:55  seroussi
-
-	* test/Verification/test1_icesheet_noicefront/: archive_acc.mat,
-	  archive_hutter.mat, archive_ice.mat, archive_macayeal.mat: test1
-	  archives
-
-2009-04-21 14:34  jschierm
-
-	* src/m/solutions/dakota/: dakota_in_data.m, dakota_in_write.m,
-	  dakota_m_write.m, setupdesign/QmuSetupDesign.m,
-	  setupdesign/setupdrag.m, setupdesign/setupgravity.m,
-	  setupdesign/setupheatcapacity.m, setupdesign/setuprhoice.m,
-	  setupdesign/setuprhowater.m, setupdesign/setupriftsfriction.m,
-	  setupdesign/setupthermalconductivity.m,
-	  setupdesign/setupthickness.m,
-	  updatefunctions/QmuUpdateFunctions.m,
-	  updatefunctions/updatedrag.m, updatefunctions/updategravity.m,
-	  updatefunctions/updateheatcapacity.m,
-	  updatefunctions/updaterho_ice.m,
-	  updatefunctions/updaterho_water.m,
-	  updatefunctions/updateriftsfriction.m,
-	  updatefunctions/updatethermalconductivity.m,
-	  updatefunctions/updatethickness.m: Removal of model class so that
-	  Dakota and ISSM scripts are independent.
-
-2009-04-21 14:06  morlighe
-
-	* src/m/classes/public/ismodelselfconsistent.m:
-	  Ismodelselfconsistent rewritten
-
-2009-04-21 13:37  seroussi
-
-	* src/m/utils/UpdateArchive/updatearchive.m: to fit the new names
-
-2009-04-21 13:28  seroussi
-
-	* test/Verification/: test1_icesheet_noicefront/Square.par,
-	  test4_icesheet_noicefront_3d/Square.par,
-	  test8_icesheet_noicefront_stokes/Square.par: cosmetics
-
-2009-04-21 12:27  morlighe
-
-	* src/m/classes/public/parameterize.m: Fixed parameter file error
-	  message
-
-2009-04-21 12:03  seroussi
-
-	* test/Verification/test8_icesheet_noicefront_stokes/: Square.par,
-	  runme.m: simplified Square.par for IceSheet test 8
-
-2009-04-21 12:02  seroussi
-
-	* test/Verification/test4_icesheet_noicefront_3d/: Square.par,
-	  runme.m: simplified Sqaure.par for test4
-
-2009-04-21 12:01  seroussi
-
-	* test/Verification/test1_icesheet_noicefront/: Square.par,
-	  runme.m: simplified Square.par test1
-
-2009-04-21 11:54  seroussi
-
-	* src/m/classes/public/ismodelselfconsistent.m: precised some
-	  checks depending on solutiontype
-
-2009-04-21 11:53  seroussi
-
-	* src/m/utils/BC/SetIceSheetBC.m: set melting and accumulation to
-	  zeros if nothing specified
-
-2009-04-21 11:21  jschierm
-
-	* src/m/classes/: @continuous_design/continuous_design.m,
-	  @continuous_design/display.m,
-	  @continuous_state/continuous_state.m,
-	  @least_squares_term/least_squares_term.m,
-	  @normal_uncertain/normal_uncertain.m,
-	  @objective_function/objective_function.m,
-	  @response_function/response_function.m,
-	  @linear_equality_constraint/linear_equality_constraint.m,
-	  @linear_inequality_constraint/linear_inequality_constraint.m,
-	  @nonlinear_equality_constraint/nonlinear_equality_constraint.m,
-	  @nonlinear_inequality_constraint/nonlinear_inequality_constraint.m:
-	  Set defaults to Dakota values but filter them out before writing.
-
-2009-04-21 10:54  seroussi
-
-	* src/m/classes/public/ismodelselfconsistent.m: optimized
-	  ismodelselfconsistent depending on package, solutiontype
-
-2009-04-21 10:53  seroussi
-
-	* src/m/utils/BC/SetIceSheetBC.m: new routine to create IceSheetBC
-
-2009-04-21 09:43  jschierm
-
-	* src/m/utils/Array/allequal.m: Function to return empty array if
-	  all array elements are equal to given value.
-
-2009-04-20 17:34  morlighe
-
-	* src/m/classes/@model/model.m: Added some initial values in model
-
-2009-04-20 10:28  morlighe
-
-	* src/m/classes/public/plot/plot_streamlines.m: minor
-
-2009-04-20 10:24  morlighe
-
-	* src/m/classes/public/plot/: applyoptions.m, parse_options.m,
-	  plot_streamlines.m, plotdoc.m: Added streamlines plot options,
-	  still some bugs due to tsearch matlab function
-
-2009-04-20 09:57  seroussi
-
-	* test/Validation/ISMIP/TestD/Square.par: minor typo
-
-2009-04-20 08:33  seroussi
-
-	* src/m/classes/public/plot/plot_basaldrag.m: possibility of doing
-	  sectionvalues on basal_drag
-
-2009-04-17 17:20  seroussi
-
-	* src/m/classes/public/plot/plotdoc.m: added capability in doc
-
-2009-04-17 17:19  seroussi
-
-	* src/m/classes/public/plot/plot_dealer.m: added basal_drag x or y
-	  in plot
-
-2009-04-17 17:18  seroussi
-
-	* src/m/classes/public/plot/plot_basaldrag.m: added x or y
-	  component in basal_drag
-
-2009-04-17 16:20  jschierm
-
-	* src/m/classes/: @model/model.m, public/displayqmu.m: Replacement
-	  of comments that got clobbered in previous commit (oops).
-
-2009-04-17 16:13  jschierm
-
-	* src/m/classes/: @model/model.m, public/displayqmu.m: Addition of
-	  qmu_method and qmu_params to model class.
-
-2009-04-17 10:25  jschierm
-
-	* src/m/solutions/dakota/: dakota_in_data.m, dakota_in_write.m:
-	  Implementation of linear constraints.
-
-2009-04-17 10:20  jschierm
-
-	* src/m/classes/@dakota_method/: dakota_method.m, display.m,
-	  dmeth_params_write.m: Implementation of linear constraints.
-
-2009-04-17 09:27  jschierm
-
-	* src/m/classes/: @continuous_design/continuous_design.m,
-	  @continuous_state/continuous_state.m,
-	  @least_squares_term/least_squares_term.m,
-	  @linear_equality_constraint/linear_equality_constraint.m,
-	  @linear_inequality_constraint/linear_inequality_constraint.m,
-	  @nonlinear_equality_constraint/nonlinear_equality_constraint.m,
-	  @nonlinear_inequality_constraint/nonlinear_inequality_constraint.m,
-	  @normal_uncertain/normal_uncertain.m,
-	  @objective_function/objective_function.m,
-	  @response_function/response_function.m: Change of method names
-	  from dvar_ and dresp_ to prop_
-
-2009-04-16 14:46  morlighe
-
-	* src/m/classes/public/plot/plot_tensor_principalaxis.m: better way
-	  of plotting principal axis
-
-2009-04-16 12:12  morlighe
-
-	* src/m/classes/public/plot/: plot_tensor_components.m,
-	  plot_tensor_principal.m, plot_tensor_principalaxis.m: better way
-	  to plot principal axis
-
-2009-04-16 12:06  seroussi
-
-	* test/Validation/EISMINT/MassConservation/runme.m: minor (wrong
-	  name)
-
-2009-04-16 12:05  seroussi
-
-	* test/Validation/EISMINT/MassConservation/CrossLine.exp: minor
-
-2009-04-16 11:57  morlighe
-
-	* src/m/solutions/ice/StrainRateCompute.m: minor
-
-2009-04-16 11:35  morlighe
-
-	* src/m/classes/public/plot/plot_tensor_principalaxis.m: Fixed bug
-	  in principal axis plots
-
-2009-04-16 11:08  morlighe
-
-	* src/m/classes/public/plot/: parse_options.m, plot_quiver.m,
-	  plot_quiver3.m, plot_quivervel.m, plot_tensor_principalaxis.m,
-	  plotdoc.m: Added density option for quiver plots (Thanks Ala)
-
-2009-04-16 10:39  morlighe
-
-	* doc/website/doc_html/about.html: Minor
-
-2009-04-16 08:56  seroussi
-
-	* src/m/classes/public/plot/plotdoc.m: wrong name of option
-
-2009-04-16 07:19  morlighe
-
-	* startup.m: status variable can be cleared (not needed in matlab
-	  workspace)
-
-2009-04-16 07:16  morlighe
-
-	* src/m/classes/public/reorder.m: added mesh reordering (to be used
-	  right after md=mesh(
-
-2009-04-16 07:11  morlighe
-
-	* src/m/classes/public/plot/plot_dealer.m: minor (avoid error
-	  message)
-
-2009-04-15 16:33  morlighe
-
-	* doc/website/doc_html/: about.html, documentation.html: minor
-
-2009-04-15 14:13  ala
-
-	* src/m/solutions/ice/StrainRateCompute.m: 1/a in principalvalues
-	  of stainrate
-
-2009-04-15 14:11  ala
-
-	* src/m/classes/public/solve.m: corrected typo problem
-
-2009-04-15 07:30  morlighe
-
-	* src/m/classes/public/plot/plot_contour.m: no error in contour if
-	  no contour found
-
-2009-04-15 07:21  morlighe
-
-	* src/m/solutions/macayeal/macayealcontrol.m: no plots if
-	  md.plot=0, use drawnow instead of pause(1)
-
-2009-04-14 16:14  morlighe
-
-	* test/Validation/ISMIP/: README, TestA/README: Minor
-
-2009-04-14 16:11  seroussi
-
-	* test/Validation/ISMIP/: README, description.pdf, results.pdf,
-	  TestA/Front.exp, TestA/README, TestA/Square.par, TestA/runme.m,
-	  TestB/Front.exp, TestB/README, TestB/Square.par, TestB/runme.m,
-	  TestC/Front.exp, TestC/README, TestC/Square.par, TestC/runme.m,
-	  TestD/Front.exp, TestD/README, TestD/Square.par, TestD/runme.m,
-	  TestE/Front.exp, TestE/README, TestE/Square.par, TestE/data.mat,
-	  TestE/data.txt, TestE/runme.m: added ISMIP_HOM tests
-
-2009-04-10 13:32  morlighe
-
-	* contributors.txt: added photo source
-
-2009-04-10 12:09  morlighe
-
-	* src/m/utils/Exp/manipulation/mergeprofiles.m: initialize tips
-	  just in case
-
-2009-04-10 12:05  morlighe
-
-	* src/m/utils/Exp/manipulation/mergeprofiles.m: Fixed bug again...
-
-2009-04-10 11:43  morlighe
-
-	* src/m/utils/Exp/manipulation/: cutarea.m, mergeprofiles.m,
-	  removeseveralpoints.m: Fixed some bugs
-
-2009-04-10 10:52  morlighe
-
-	* src/m/utils/Exp/expmaster.m: some bugs remaining
-
-2009-04-10 10:42  morlighe
-
-	* src/m/utils/Exp/manipulation/: addendprofile.m,
-	  addinsideprofile.m, closeprofile.m, cutarea.m, cutprofile.m,
-	  mergeprofiles.m, modifyposition.m, removepoints.m,
-	  removeprofile.m, removeseveralpoints.m: Minor
-
-2009-04-09 09:52  morlighe
-
-	* test/Validation/EISMINT/: README, description_EISMINT.pdf,
-	  shelf-descr.pdf, Diagnostic1/README, Diagnostic1/runme.m,
-	  Diagnostic2/README, Diagnostic2/runme.m, MassConservation/README,
-	  MassConservation/runme.m, Transient/README, Transient/runme.m:
-	  Minor
-
-2009-04-09 09:40  seroussi
-
-	* test/Validation/EISMINT/: README, shelf-descr.pdf,
-	  Diagnostic1/DomainOutline.exp, Diagnostic1/Front.exp,
-	  Diagnostic1/README, Diagnostic1/Square.par, Diagnostic1/runme.m,
-	  Diagnostic2/DomainOutline.exp, Diagnostic2/Front.exp,
-	  Diagnostic2/README, Diagnostic2/Square.par, Diagnostic2/runme.m,
-	  MassConservation/CrossLine.exp,
-	  MassConservation/DomainOutline.exp, MassConservation/Front.exp,
-	  MassConservation/README, MassConservation/Square.par,
-	  MassConservation/runme.m, Transient/DomainOutline.exp,
-	  Transient/Front.exp, Transient/README, Transient/Square.par,
-	  Transient/runme.m: Added EISMINT test for MacAyeal and
-	  prognostic2d
-
-2009-04-09 07:50  morlighe
-
-	* doc/website/doc_c/: createchtmldoc.sh, layoutissm.xml: minor
-	  changes
-
-2009-04-09 07:37  morlighe
-
-	* src/m/utils/Mesh/: meshmaker.m, squaremesh.m: Improved squaremesh
-
-2009-04-08 15:29  jschierm
-
-	* src/m/classes/: @linear_inequality_constraint/display.m,
-	  @linear_inequality_constraint/linear_inequality_constraint.m,
-	  @linear_equality_constraint/display.m,
-	  @linear_equality_constraint/linear_equality_constraint.m:
-	  Addition of linear constraint classes.
-
-2009-04-08 14:55  morlighe
-
-	* src/m/classes/public/plot/processdata.m: this way it is better
-
-2009-04-08 14:52  morlighe
-
-	* src/m/classes/public/plot/processdata.m: not needed
-
-2009-04-08 14:49  morlighe
-
-	* src/m/classes/public/plot/processdata.m: minor
-
-2009-04-08 14:23  seroussi
-
-	* src/m/utils/Mesh/meshmaker.m: better comments
-
-2009-04-08 14:16  seroussi
-
-	* src/m/utils/Mesh/meshmaker.m: added meshmaker for structerated
-	  sqaure mesh
-
-2009-04-08 13:50  morlighe
-
-	* doc/website/doc_html/: about.html: typo
-
-2009-04-08 13:35  morlighe
-
-	* src/m/classes/public/plot/plot_elementstype.m: fixed
-	  plot_elementstype when Stokes... Matlab crashes with alpha on
-	  patches now...
-
-2009-04-08 11:55  jschierm
-
-	* src/m/utils/Array/item2str.m: Addition of error checking.
-
-2009-04-08 11:51  morlighe
-
-	* doc/website/doc_c/: createchtmldoc.sh, doxygen.config,
-	  layoutissm.xml: Added issmlayout
-
-2009-04-08 11:32  jschierm
-
-	* src/m/classes/@dakota_method/: dakota_method.m,
-	  dmeth_params_write.m: Addition of method-independent parameters
-	  to dakota_method class.
-
-2009-04-08 11:01  morlighe
-
-	* doc/website/doc_c/createchtmldoc.sh: doxygen tabs are nicer
-
-2009-04-08 10:45  morlighe
-
-	* doc/website/doc_html/faq.html: minor
-
-2009-04-08 10:09  morlighe
-
-	* doc/website/doc_html/: about.html, style.css: minor
-
-2009-04-08 09:00  morlighe
-
-	* src/m/utils/Exp/: expmaster.m, manipulation/addcontour.m: Added
-	  addcontour
-
-2009-04-08 08:38  morlighe
-
-	* src/m/utils/Exp/expmaster.m: Fixed expmaster: now much much
-	  faster thanks to getframe
-
-2009-04-07 17:10  seroussi
-
-	* src/m/: classes/public/isresultconsistent.m,
-	  solutions/ice/ModelProcessorDiagnosticHoriz.m: generalised mpcs
-	  for periodic boundary conditions
-
-2009-04-07 17:08  seroussi
-
-	* src/m/classes/public/: SectionValues.m, plot/plot_section.m:
-	  Fixed Section plot
-
-2009-04-07 16:53  morlighe
-
-	* src/m/classes/public/plot/plot_section.m: test fix section plot
-
-2009-04-07 16:42  seroussi
-
-	* src/m/classes/public/SectionValues.m: to be continued
-
-2009-04-07 16:39  morlighe
-
-	* doc/index.html: Minor
-
-2009-04-07 16:07  morlighe
-
-	* doc/website/doc_html/style.css: improved menu
-
-2009-04-07 15:48  morlighe
-
-	* doc/: index.html, website/doc_html/about.html,
-	  website/doc_html/documentation.html,
-	  website/doc_html/download.html, website/doc_html/faq.html,
-	  website/doc_html/features.html,
-	  website/doc_html/installation.html, website/doc_html/style.css,
-	  website/doc_html/wiki.html: Minor
-
-2009-04-07 15:07  jschierm
-
-	* src/m/solutions/dakota/: dakota_in_data.m, dakota_in_write.m,
-	  dakota_m_write.m: Implementation of parameters in dakota_method
-	  class
-
-2009-04-07 14:45  jschierm
-
-	* src/m/classes/@dakota_method/: dakota_method.m, display.m,
-	  dmeth_params_merge.m, dmeth_params_write.m: Addition of
-	  method-dependent parameters into dakota_method class.
-
-2009-04-07 14:33  morlighe
-
-	* src/m/classes/public/thicknessevolution.m: Accelerated
-	  thicnessevolution
-
-2009-04-07 14:30  morlighe
-
-	* doc/website/doc_html/: download.html, style.css: Added download
-	  webpage
-
-2009-04-07 14:17  seroussi
-
-	* src/m/classes/public/plot/applyoptions.m: minor
-
-2009-04-07 14:04  seroussi
-
-	* src/m/classes/public/plot/plot_penalties.m: isnan returned an
-	  empty matrix instead of a boolean
-
-2009-04-07 13:59  seroussi
-
-	* src/m/classes/public/plot/applyoptions.m: minor
-
-2009-04-07 13:21  morlighe
-
-	* doc/index.html: minor
-
-2009-04-07 11:59  morlighe
-
-	* doc/: index.html, website/doc_html/about.html,
-	  website/doc_html/documentation.html,
-	  website/doc_html/download.html, website/doc_html/faq.html,
-	  website/doc_html/features.html,
-	  website/doc_html/installation.html, website/doc_html/style.css,
-	  website/doc_html/wiki.html: Added About us webpage
-
-2009-04-07 11:16  morlighe
-
-	* doc/: index.html, website/doc_html/installation.html,
-	  website/doc_html/style.css: completed installation page
-
-2009-04-07 10:49  seroussi
-
-	* src/m/classes/public/extrude.m: dirichlet value (thickness) for
-	  prognostic must be same on each layer
-
-2009-04-07 10:18  seroussi
-
-	* src/m/classes/public/plot/: plot_contour.m, processdata.m: fixed
-	  contour for 3d meshes (Thank you Mathieu)
-
-2009-04-07 10:03  seroussi
-
-	* src/m/classes/public/plot/applyoptions.m: minor typo
-
-2009-04-07 09:16  morlighe
-
-	* doc/: index.html, website/doc_html/about.html,
-	  website/doc_html/at_work.gif,
-	  website/doc_html/documentation.html,
-	  website/doc_html/download.html, website/doc_html/faq.html,
-	  website/doc_html/features.html,
-	  website/doc_html/installation.html, website/doc_html/wiki.html:
-	  prepared some webpages
-
-2009-04-07 08:38  morlighe
-
-	* src/m/classes/public/plot/: applyoptions.m, parse_options.m,
-	  plot_basaldrag.m, plot_boundaries.m, plot_dealer.m,
-	  plot_drivingstress.m, plot_elementnumbering.m, plot_quivervel.m,
-	  plot_section.m, plot_tensor_components.m,
-	  plot_tensor_principal.m, plot_tensor_principalaxis.m,
-	  plot_transient_movie.m, plot_unit.m, plotmodel.m, processdata.m:
-	  Split plot_unit into plot_dealer and plot_unit to be used by
-	  other special plots. Example: plot_tensor_comp 300 lines -> 79
-	  lines
-
-2009-04-07 08:28  seroussi
-
-	* test/Validation/RoundIceSheet/: runme.m, Circ.par: to match
-	  current version of the code
-
-2009-04-06 15:04  seroussi
-
-	* src/m/solutions/ice/ModelProcessorPrognostic.m: added dirichlet
-	  values for prognostic
-
-2009-04-06 14:47  jschierm
-
-	* src/m/solutions/dakota/qmu.m: Commented-out MPI statement.
-
-2009-04-06 14:44  jschierm
-
-	* src/m/solutions/dakota/dakota_in_write.m: Add the rest of the
-	  Dakota methods.
-
-2009-04-06 14:40  jschierm
-
-	* src/m/solutions/dakota/: dakota_in_data.m, dakota_in_params.m,
-	  dakota_in_write.m, dakota_m_write.m: Implement dakota_method
-	  class and add parametric study methods.
-
-2009-04-06 11:55  jschierm
-
-	* src/m/solutions/dakota/dakota_in_write.m: Removed find_string.m
-	  to separate utility.
-
-2009-04-06 11:54  jschierm
-
-	* src/m/solutions/dakota/dakota_in_parse.m: Parse optimization
-	  responses from Dakota .in file.
-
-2009-04-06 11:52  jschierm
-
-	* src/m/solutions/dakota/dakota_in_write.m: Output response levels
-	  only for nondeterministic methods.
-
-2009-04-06 11:43  jschierm
-
-	* src/m/solutions/dakota/setupdesign/: QmuSetupDesign.m,
-	  setuprhowater.m, setupgravity.m, setupheatcapacity.m,
-	  setupthermalconductivity.m: Add
-	  rho_water,heat_capacity,thermal_conductivity,and gravity to
-	  setupdesign.
-
-2009-04-06 11:36  jschierm
-
-	* src/m/classes/@dakota_method/: dakota_method.m, display.m:
-	  Implement dakota_method class to externalize methods for Dakota.
-
-2009-04-06 11:23  jschierm
-
-	* src/m/utils/Array/any2str.m: Utility to convert anything to a
-	  string.
-
-2009-04-06 11:21  jschierm
-
-	* src/m/utils/Array/find_string.m: Utility to find a string in a
-	  cell array (from dakota_in_write.m).
-
-2009-04-06 11:20  jschierm
-
-	* src/m/utils/Array/: item2str.m, string_cell.m, string_vec.m: More
-	  (and revised) utilities for displaying arrays.
-
-2009-04-06 10:29  morlighe
-
-	* src/m/solutions/dakota/: cielo_ice_script.sh, dakota_in_data.m,
-	  dakota_in_params.m, dakota_in_parse.m, dakota_in_write.m,
-	  dakota_m_write.m, dakota_out_parse.m, plot_boxplot.m,
-	  plot_hist_norm.m, plot_if_bars.m, plot_normdist_bars.m,
-	  plot_normplot.m, plot_prob_bars.m, plot_rlev_bars.m,
-	  plot_sampdist_bars.m, qmu.m, qmuname.m,
-	  responsefunctions/MaxAbsVx.m, responsefunctions/MaxAbsVy.m,
-	  responsefunctions/MaxVel.m, responsefunctions/MaxVx.m,
-	  responsefunctions/MaxVy.m, responsefunctions/MinVel.m,
-	  responsefunctions/MinVx.m, responsefunctions/MinVy.m,
-	  responsefunctions/QmuResponseValue.m,
-	  setupdesign/QmuSetupDesign.m, setupdesign/setupdrag.m,
-	  setupdesign/setuprhoice.m, setupdesign/setupriftsfriction.m,
-	  setupdesign/setupthickness.m,
-	  updatefunctions/QmuUpdateFunctions.m,
-	  updatefunctions/updatedrag.m, updatefunctions/updategravity.m,
-	  updatefunctions/updateheatcapacity.m,
-	  updatefunctions/updaterho_ice.m,
-	  updatefunctions/updaterho_water.m,
-	  updatefunctions/updateriftsfriction.m,
-	  updatefunctions/updatethermalconductivity.m,
-	  updatefunctions/updatethickness.m: readded dakota
-
-2009-04-06 08:40  morlighe
-
-	* doc/website/: doc_c/doxygenissm.css, doc_c/doxygenissm.css.bak,
-	  doc_c/headerissm.html, doc_c/tabsissm.css, doc_html/style.css,
-	  doc_m/template_issm/m2html.css: improved geneal layout (doc_c)
-
-2009-04-03 17:40  seroussi
-
-	* src/m/classes/public/plot/plot_transient_movie.m: model neede in
-	  apply_options
-
-2009-04-03 17:38  morlighe
-
-	* doc/website/doc_m/template_issm/master.tpl: better master index
-
-2009-04-03 17:31  seroussi
-
-	* src/m/utils/Nightly/nightlyrun.m: minor
-
-2009-04-03 17:29  morlighe
-
-	* doc/website/doc_m/creatematlabhtmldoc.sh: Minor
-
-2009-04-03 17:20  morlighe
-
-	* doc/website/: Makefile, doc_c/createchtmldoc.sh,
-	  doc_c/doxygen.config, doc_c/doxygenissm.css,
-	  doc_c/doxygenissm.css.bak, doc_c/footerissm.html,
-	  doc_c/headerissm.html, doc_c/headerissm.png, doc_c/logo_JPL.png,
-	  doc_c/logo_NASA.png, doc_c/tabsissm.css,
-	  doc_html/documentation.html, doc_html/headerissm.png,
-	  doc_html/logo_JPL.png, doc_html/logo_NASA.png,
-	  doc_html/style.css, doc_m/creatematlabhtmldoc.sh,
-	  doc_m/template_issm/alpha.png, doc_m/template_issm/c++.png,
-	  doc_m/template_issm/c.png, doc_m/template_issm/demoicon.gif,
-	  doc_m/template_issm/down.png, doc_m/template_issm/fortran.png,
-	  doc_m/template_issm/graph.tpl,
-	  doc_m/template_issm/headerissm.png, doc_m/template_issm/hp.png,
-	  doc_m/template_issm/left.png, doc_m/template_issm/linux.png,
-	  doc_m/template_issm/logo_JPL.png,
-	  doc_m/template_issm/logo_NASA.png,
-	  doc_m/template_issm/m2html.css, doc_m/template_issm/master.tpl,
-	  doc_m/template_issm/matlabicon.gif, doc_m/template_issm/mdir.tpl,
-	  doc_m/template_issm/mex.png, doc_m/template_issm/mfile.tpl,
-	  doc_m/template_issm/right.png, doc_m/template_issm/sgi.png,
-	  doc_m/template_issm/simulinkicon.gif,
-	  doc_m/template_issm/solaris.png, doc_m/template_issm/todo.tpl,
-	  doc_m/template_issm/up.png, doc_m/template_issm/windows.png,
-	  doc_m/template_issm/template_issm2/alpha.png,
-	  doc_m/template_issm/template_issm2/c++.png,
-	  doc_m/template_issm/template_issm2/c.png,
-	  doc_m/template_issm/template_issm2/demoicon.gif,
-	  doc_m/template_issm/template_issm2/down.png,
-	  doc_m/template_issm/template_issm2/fortran.png,
-	  doc_m/template_issm/template_issm2/graph.tpl,
-	  doc_m/template_issm/template_issm2/headerissm.png,
-	  doc_m/template_issm/template_issm2/hp.png,
-	  doc_m/template_issm/template_issm2/left.png,
-	  doc_m/template_issm/template_issm2/linux.png,
-	  doc_m/template_issm/template_issm2/logo_JPL.png,
-	  doc_m/template_issm/template_issm2/logo_NASA.png,
-	  doc_m/template_issm/template_issm2/m2html.css,
-	  doc_m/template_issm/template_issm2/master.tpl,
-	  doc_m/template_issm/template_issm2/matlabicon.gif,
-	  doc_m/template_issm/template_issm2/mdir.tpl,
-	  doc_m/template_issm/template_issm2/mex.png,
-	  doc_m/template_issm/template_issm2/mfile.tpl,
-	  doc_m/template_issm/template_issm2/right.png,
-	  doc_m/template_issm/template_issm2/sgi.png,
-	  doc_m/template_issm/template_issm2/simulinkicon.gif,
-	  doc_m/template_issm/template_issm2/solaris.png,
-	  doc_m/template_issm/template_issm2/todo.tpl,
-	  doc_m/template_issm/template_issm2/up.png,
-	  doc_m/template_issm/template_issm2/windows.png: Added website
-
-2009-04-03 17:18  morlighe
-
-	* doc/developperguide.pdf: no more developerguide
-
-2009-04-03 17:10  morlighe
-
-	* scripts/: archive.sh, createlinks.sh, eraselinks.sh,
-	  quickinstall.sh: Added some files
-
-2009-04-03 17:08  morlighe
-
-	* doc/index.html: Better documentation setup
-
-2009-04-03 17:07  morlighe
-
-	* doc/MakefileIce: Missing doc target
-
-2009-04-03 17:05  morlighe
-
-	* cron/linux_cronfile: New locations for cron jobs
-
-2009-04-03 17:04  morlighe
-
-	* etc/cielo.rc: New cielo.rc settings.
-
-2009-04-03 17:04  morlighe
-
-	* packages/list: Useless
-
-2009-04-03 17:01  morlighe
-
-	* MakefileIce, bin/MakefileIce, bin/cvs_empty_file: Added bin clean
-	  target
-
-2009-04-03 16:59  morlighe
-
-	* src/mex/MeshPartition/MeshPartition.c: Switched to x code
-	  framework
-
-2009-04-03 16:56  morlighe
-
-	* src/c/MeshPartitionx/: MeshPartition.h, MeshPartitionx.c,
-	  MeshPartitionx.h: MeshPartitionx: completed the x framework.
-	  Some left over from Cielo.
-
-2009-04-03 16:54  morlighe
-
-	* src/c/: ArgusContourToMeshx/MakefileIce, HoleFillerx/MakefileIce,
-	  IceDataInterpx/MakefileIce, MeshPartitionx/MakefileIce,
-	  Visux/MakefileIce: Fixed Bug
-
-2009-04-03 16:51  morlighe
-
-	* ChangeLogIce: change log for Ice
-
-2009-04-03 16:49  morlighe
-
-	* src/mex/ArgusContourToMesh/ArgusContourToMesh.c: reorg
-
-2009-04-03 16:45  morlighe
-
-	* etc/environment.sh, etc/environment_variables,
-	  src/c/ArgusContourToMeshx/ArgusContourToMeshx.c,
-	  src/c/ArgusContourToMeshx/Contour.c,
-	  src/c/ArgusContourToMeshx/Contour.h: reorg
-
-2009-04-03 16:44  morlighe
-
-	* INSTALL, INSTALLICE: moved INSTALL to INSTALLICE
-
-2009-04-03 16:43  morlighe
-
-	* README, READMEICE: moved REDME to READMEICE
-
-2009-04-03 16:42  morlighe
-
-	* src/c/ArgusContourToMeshx/: ArgusContourToMesh.h,
-	  ArgusContourToMeshx.h: reorg
-
-2009-04-03 16:40  morlighe
-
-	* doc/Makefile, src/c/ArgusContourToMeshx/Makefile,
-	  src/c/HoleFillerx/Makefile, src/c/IceDataInterpx/Makefile,
-	  src/c/MeshPartitionx/Makefile, src/c/Visux/Makefile,
-	  src/c/shared/TriMesh/Makefile: not needed anymore, automatically
-	  generated by autoconf
-
-2009-04-03 16:36  morlighe
-
-	* examples/Bumps/Bump1_surface_bed/DomainOutline.exp,
-	  examples/Bumps/Bump1_surface_bed/Front.exp,
-	  examples/Bumps/Bump1_surface_bed/Square.par,
-	  examples/Bumps/Bump1_surface_bed/runme.m,
-	  examples/Bumps/Bump2_bed/DomainOutline.exp,
-	  examples/Bumps/Bump2_bed/Front.exp,
-	  examples/Bumps/Bump2_bed/Square.par,
-	  examples/Bumps/Bump2_bed/runme.m,
-	  examples/SquareIceShelf/DomainOutline.exp,
-	  examples/SquareIceShelf/Front.exp,
-	  examples/SquareIceShelf/README,
-	  examples/SquareIceShelf/Shelf.exp,
-	  examples/SquareIceShelf/Square.par,
-	  examples/SquareIceShelf/square.model,
-	  test/Validation/MacAyealVsPattyn/test1_iceshelf/DomainOutline.exp,
-	  test/Validation/MacAyealVsPattyn/test1_iceshelf/Front.exp,
-	  test/Validation/MacAyealVsPattyn/test1_iceshelf/Pattyn.exp,
-	  test/Validation/MacAyealVsPattyn/test1_iceshelf/Shelf.exp,
-	  test/Validation/MacAyealVsPattyn/test1_iceshelf/Square.par,
-	  test/Validation/MacAyealVsPattyn/test1_iceshelf/runme.m,
-	  test/Validation/MacAyealVsPattyn/test2_icesheet/DomainOutline.exp,
-	  test/Validation/MacAyealVsPattyn/test2_icesheet/Front.exp,
-	  test/Validation/MacAyealVsPattyn/test2_icesheet/Pattyn.exp,
-	  test/Validation/MacAyealVsPattyn/test2_icesheet/Square.par,
-	  test/Validation/MacAyealVsPattyn/test2_icesheet/runme.m,
-	  test/Validation/MacAyealVsPattyn/test3_icesheet_iceshelf/DomainOutline.exp,
-	  test/Validation/MacAyealVsPattyn/test3_icesheet_iceshelf/Front.exp,
-	  test/Validation/MacAyealVsPattyn/test3_icesheet_iceshelf/Pattyn.exp,
-	  test/Validation/MacAyealVsPattyn/test3_icesheet_iceshelf/Shelf.exp,
-	  test/Validation/MacAyealVsPattyn/test3_icesheet_iceshelf/Square.par,
-	  test/Validation/MacAyealVsPattyn/test3_icesheet_iceshelf/runme.m,
-	  test/Validation/PattynStokes/test1_iceshelf/DomainOutline.exp,
-	  test/Validation/PattynStokes/test1_iceshelf/Front.exp,
-	  test/Validation/PattynStokes/test1_iceshelf/Shelf.exp,
-	  test/Validation/PattynStokes/test1_iceshelf/Square.par,
-	  test/Validation/PattynStokes/test1_iceshelf/runme.m,
-	  test/Validation/PattynStokes/test2_icesheet/DomainOutline.exp,
-	  test/Validation/PattynStokes/test2_icesheet/Front.exp,
-	  test/Validation/PattynStokes/test2_icesheet/Square.par,
-	  test/Validation/PattynStokes/test2_icesheet/runme.m,
-	  test/Validation/PattynStokes/test3_icesheet_iceshelf/DomainOutline.exp,
-	  test/Validation/PattynStokes/test3_icesheet_iceshelf/Front.exp,
-	  test/Validation/PattynStokes/test3_icesheet_iceshelf/Shelf.exp,
-	  test/Validation/PattynStokes/test3_icesheet_iceshelf/Square.par,
-	  test/Validation/PattynStokes/test3_icesheet_iceshelf/runme.m,
-	  test/Validation/RoundIceSheet/Circ.par,
-	  test/Validation/RoundIceSheet/CreateDomainOutline.m,
-	  test/Validation/RoundIceSheet/README,
-	  test/Validation/RoundIceSheet/runme.m,
-	  test/Validation/ThermalTests/Melting/DomainOutline.exp,
-	  test/Validation/ThermalTests/Melting/Front.exp,
-	  test/Validation/ThermalTests/Melting/Square.par,
-	  test/Validation/ThermalTests/Melting/runme.m,
-	  test/Validation/ThermalTests/Melting/thermalboundarycondition.m,
-	  test/Validation/ThermalTests/Simpleadvection/DomainOutline.exp,
-	  test/Validation/ThermalTests/Simpleadvection/Front.exp,
-	  test/Validation/ThermalTests/Simpleadvection/Square.par,
-	  test/Validation/ThermalTests/Simpleadvection/runme.m,
-	  test/Validation/ThermalTests/Simpleadvection/thermalboundarycondition.m,
-	  test/Validation/ThermalTests/Simpleconduction/DomainOutline.exp,
-	  test/Validation/ThermalTests/Simpleconduction/Front.exp,
-	  test/Validation/ThermalTests/Simpleconduction/Shelf.exp,
-	  test/Validation/ThermalTests/Simpleconduction/Square.par,
-	  test/Validation/ThermalTests/Simpleconduction/runme.m,
-	  test/Validation/ThermalTests/Simpleconduction/thermalboundarycondition.m,
-	  test/Validation/ThermalTests/Simplegeothermalflux/DomainOutline.exp,
-	  test/Validation/ThermalTests/Simplegeothermalflux/Front.exp,
-	  test/Validation/ThermalTests/Simplegeothermalflux/Square.par,
-	  test/Validation/ThermalTests/Simplegeothermalflux/runme.m,
-	  test/Validation/ThermalTests/Simplegeothermalflux/thermalboundarycondition.m,
-	  test/Verification/test10_iceshelf_icefront_stokes/DomainOutline.exp,
-	  test/Verification/test10_iceshelf_icefront_stokes/Front.exp,
-	  test/Verification/test10_iceshelf_icefront_stokes/Square.par,
-	  test/Verification/test10_iceshelf_icefront_stokes/archive_melting.mat,
-	  test/Verification/test10_iceshelf_icefront_stokes/archive_stokes.mat,
-	  test/Verification/test10_iceshelf_icefront_stokes/archive_temperature.mat,
-	  test/Verification/test10_iceshelf_icefront_stokes/runme.m,
-	  test/Verification/test10_iceshelf_icefront_stokes/updatearchive.m,
-	  test/Verification/test11_penalties_iceshelf_allmodels/DomainOutline.exp,
-	  test/Verification/test11_penalties_iceshelf_allmodels/Front.exp,
-	  test/Verification/test11_penalties_iceshelf_allmodels/Pattyn.exp,
-	  test/Verification/test11_penalties_iceshelf_allmodels/Square.par,
-	  test/Verification/test11_penalties_iceshelf_allmodels/Stokes.exp,
-	  test/Verification/test11_penalties_iceshelf_allmodels/archive_melting.mat,
-	  test/Verification/test11_penalties_iceshelf_allmodels/archive_temperature.mat,
-	  test/Verification/test11_penalties_iceshelf_allmodels/archive_velocity.mat,
-	  test/Verification/test11_penalties_iceshelf_allmodels/runme.m,
-	  test/Verification/test11_penalties_iceshelf_allmodels/updatearchive.m,
-	  test/Verification/test1_icesheet_noicefront/DomainOutline.exp,
-	  test/Verification/test1_icesheet_noicefront/Front.exp,
-	  test/Verification/test1_icesheet_noicefront/Square.par,
-	  test/Verification/test1_icesheet_noicefront/archive_acc.mat,
-	  test/Verification/test1_icesheet_noicefront/archive_hutter.mat,
-	  test/Verification/test1_icesheet_noicefront/archive_ice.mat,
-	  test/Verification/test1_icesheet_noicefront/archive_macayeal.mat,
-	  test/Verification/test1_icesheet_noicefront/runme.m,
-	  test/Verification/test1_icesheet_noicefront/updatearchive.m,
-	  test/Verification/test2_icesheet_icefront/DomainOutline.exp,
-	  test/Verification/test2_icesheet_icefront/Front.exp,
-	  test/Verification/test2_icesheet_icefront/Hutter.exp,
-	  test/Verification/test2_icesheet_icefront/Square.par,
-	  test/Verification/test2_icesheet_icefront/archive_acc.mat,
-	  test/Verification/test2_icesheet_icefront/archive_hutter.mat,
-	  test/Verification/test2_icesheet_icefront/archive_ice.mat,
-	  test/Verification/test2_icesheet_icefront/archive_macayeal.mat,
-	  test/Verification/test2_icesheet_icefront/archive_thickness.mat,
-	  test/Verification/test2_icesheet_icefront/runme.m,
-	  test/Verification/test2_icesheet_icefront/updatearchive.m,
-	  test/Verification/test3_iceshelf_icefront/DomainOutline.exp,
-	  test/Verification/test3_iceshelf_icefront/Front.exp,
-	  test/Verification/test3_iceshelf_icefront/Square.par,
-	  test/Verification/test3_iceshelf_icefront/archive_acc.mat,
-	  test/Verification/test3_iceshelf_icefront/archive_ice.mat,
-	  test/Verification/test3_iceshelf_icefront/archive_macayeal.mat,
-	  test/Verification/test3_iceshelf_icefront/archive_thickness.mat,
-	  test/Verification/test3_iceshelf_icefront/runme.m,
-	  test/Verification/test3_iceshelf_icefront/updatearchive.m,
-	  test/Verification/test4_icesheet_noicefront_3d/DomainOutline.exp,
-	  test/Verification/test4_icesheet_noicefront_3d/Front.exp,
-	  test/Verification/test4_icesheet_noicefront_3d/Square.par,
-	  test/Verification/test4_icesheet_noicefront_3d/archive_hutter.mat,
-	  test/Verification/test4_icesheet_noicefront_3d/archive_melting.mat,
-	  test/Verification/test4_icesheet_noicefront_3d/archive_pattyn.mat,
-	  test/Verification/test4_icesheet_noicefront_3d/archive_temperature.mat,
-	  test/Verification/test4_icesheet_noicefront_3d/runme.m,
-	  test/Verification/test4_icesheet_noicefront_3d/updatearchive.m,
-	  test/Verification/test5_icesheet_icefront_3d/DomainOutline.exp,
-	  test/Verification/test5_icesheet_icefront_3d/Front.exp,
-	  test/Verification/test5_icesheet_icefront_3d/Square.par,
-	  test/Verification/test5_icesheet_icefront_3d/archive_melting.mat,
-	  test/Verification/test5_icesheet_icefront_3d/archive_melting_transient.mat,
-	  test/Verification/test5_icesheet_icefront_3d/archive_pattyn.mat,
-	  test/Verification/test5_icesheet_icefront_3d/archive_temperature.mat,
-	  test/Verification/test5_icesheet_icefront_3d/archive_temperature_transient.mat,
-	  test/Verification/test5_icesheet_icefront_3d/archive_thickness.mat,
-	  test/Verification/test5_icesheet_icefront_3d/runme.m,
-	  test/Verification/test5_icesheet_icefront_3d/updatearchive.m,
-	  test/Verification/test6_iceshelf_icefront_3d/DomainOutline.exp,
-	  test/Verification/test6_iceshelf_icefront_3d/Front.exp,
-	  test/Verification/test6_iceshelf_icefront_3d/Square.par,
-	  test/Verification/test6_iceshelf_icefront_3d/archive_melting.mat,
-	  test/Verification/test6_iceshelf_icefront_3d/archive_melting_transient.mat,
-	  test/Verification/test6_iceshelf_icefront_3d/archive_pattyn.mat,
-	  test/Verification/test6_iceshelf_icefront_3d/archive_temperature.mat,
-	  test/Verification/test6_iceshelf_icefront_3d/archive_temperature_transient.mat,
-	  test/Verification/test6_iceshelf_icefront_3d/archive_thickness.mat,
-	  test/Verification/test6_iceshelf_icefront_3d/runme.m,
-	  test/Verification/test6_iceshelf_icefront_3d/updatearchive.m,
-	  test/Verification/test7_penalties_iceshelf_3d/DomainOutline.exp,
-	  test/Verification/test7_penalties_iceshelf_3d/Front.exp,
-	  test/Verification/test7_penalties_iceshelf_3d/Pattyn.exp,
-	  test/Verification/test7_penalties_iceshelf_3d/Square.par,
-	  test/Verification/test7_penalties_iceshelf_3d/archive_melting.mat,
-	  test/Verification/test7_penalties_iceshelf_3d/archive_temperature.mat,
-	  test/Verification/test7_penalties_iceshelf_3d/archive_velocity.mat,
-	  test/Verification/test7_penalties_iceshelf_3d/iceshelf.exp,
-	  test/Verification/test7_penalties_iceshelf_3d/runme.m,
-	  test/Verification/test7_penalties_iceshelf_3d/updatearchive.m,
-	  test/Verification/test8_icesheet_noicefront_stokes/DomainOutline.exp,
-	  test/Verification/test8_icesheet_noicefront_stokes/Front.exp,
-	  test/Verification/test8_icesheet_noicefront_stokes/Square.par,
-	  test/Verification/test8_icesheet_noicefront_stokes/archive_melting.mat,
-	  test/Verification/test8_icesheet_noicefront_stokes/archive_stokes.mat,
-	  test/Verification/test8_icesheet_noicefront_stokes/archive_temperature.mat,
-	  test/Verification/test8_icesheet_noicefront_stokes/runme.m,
-	  test/Verification/test8_icesheet_noicefront_stokes/updatearchive.m,
-	  test/Verification/test9_icesheet_icefront_stokes/DomainOutline.exp,
-	  test/Verification/test9_icesheet_icefront_stokes/Front.exp,
-	  test/Verification/test9_icesheet_icefront_stokes/Square.par,
-	  test/Verification/test9_icesheet_icefront_stokes/archive_melting.mat,
-	  test/Verification/test9_icesheet_icefront_stokes/archive_stokes.mat,
-	  test/Verification/test9_icesheet_icefront_stokes/archive_temperature.mat,
-	  test/Verification/test9_icesheet_icefront_stokes/runme.m,
-	  test/Verification/test9_icesheet_icefront_stokes/updatearchive.m,
-	  test/Verification/test_cielo/DomainOutline.exp,
-	  test/Verification/test_cielo/DomainOutlineRifts.exp,
-	  test/Verification/test_cielo/Front.exp,
-	  test/Verification/test_cielo/IceShelf.exp,
-	  test/Verification/test_cielo/Pattyn.exp,
-	  test/Verification/test_cielo/Rifts.exp,
-	  test/Verification/test_cielo/Square.par,
-	  test/Verification/test_cielo/control.mat,
-	  test/Verification/test_cielo/diagnostic_horiz_macayeal.mat,
-	  test/Verification/test_cielo/diagnostic_horiz_mixed.mat,
-	  test/Verification/test_cielo/diagnostic_horiz_pattyn.mat,
-	  test/Verification/test_cielo/diagnostic_horiz_rifts.mat,
-	  test/Verification/test_cielo/runme.m,
-	  test/Verification/test_cielo/thermalsteady.mat: Moved tests to
-	  test and examples
-
-2009-04-03 16:27  morlighe
-
-	* packages/: Makefile, README, list, dakota/Dakota_4_2.src.tar.gz,
-	  dakota/install.sh, doxygen/doxygen-1.5.8.src.tar.gz,
-	  doxygen/install.sh, gdal/GDALmake.opt.patch,
-	  gdal/gdal-1.6.0.tar.gz, gdal/install.sh, m2html/install.sh,
-	  m2html/m2html.m.patch, m2html/m2html.zip,
-	  metis/Makefile.in.patch, metis/install.sh,
-	  metis/metis-4.0.tar.gz, mpich2/Examples.Makefile.patch,
-	  mpich2/install.sh, mpich2/mpich2-1.0.2p1.tar.gz, mtoc/install.sh,
-	  mtoc/mtoc.tgz, petsc/install.sh, petsc/petsc-2.3.2-p3.tar.gz,
-	  qhull/install.sh, qhull/qhull-2003.1.tar.gz, slepc/install.sh,
-	  slepc/slepc-2.3.2.tgz, sowing/install.sh, sowing/sowing.tar.gz,
-	  suitesparse/SuiteSparse-3.2.0.tar.gz,
-	  suitesparse/SuiteSparse_install.patch, suitesparse/install.sh,
-	  triangle/install.sh, triangle/makefile,
-	  triangle/triangle.c.patch, triangle/triangle.zip: moved libs to
-	  packages
-
-2009-04-03 16:21  morlighe
-
-	* contributors.txt: blabla
-
-2009-04-03 16:10  morlighe
-
-	* src/m/classes/: @pentaelem/CreateKMatrix.mexa64,
-	  @pentaelem/CreatePVector.mexa64, @triaelem/CreateKMatrix.mexa64:
-	  Not needed
-
-2009-04-03 16:08  morlighe
-
-	* bin/cvs_empty_file: empty file needed
-
-2009-04-03 16:05  morlighe
-
-	* cron/nightlyrun.sh, doc/issmdoc.m, etc/Make_default_rules.mk,
-	  etc/config_linux64.mk, startup.m, bin/startup.m: reorg
-
-2009-04-03 16:01  morlighe
-
-	* Makefile.issm: gone
-
-2009-04-03 16:00  morlighe
-
-	* src/m/shared/: GaussPenta.m, GaussQuad.m, GaussSegment.m,
-	  GaussTetra.m, GaussTria.m, Getalpha2.m, Solver.m, hutterenum.m,
-	  macayealenum.m, noneenum.m, pattynenum.m, recover_input.m,
-	  stokesenum.m: reorg
-
-2009-04-03 15:55  morlighe
-
-	* src/m/: classes/@acceleratedtriaelem/CreateKMatrix.m,
-	  classes/@acceleratedtriaelem/CreatePVector.m,
-	  classes/@acceleratedtriaelem/acceleratedtriaelem.m,
-	  classes/@acceleratedtriaelem/display.m,
-	  classes/@acceleratedtriaelem/subsasgn.m,
-	  classes/@acceleratedtriaelem/subsref.m,
-	  classes/@beamelem/CreateKMatrix.m,
-	  classes/@beamelem/CreatePVector.m,
-	  classes/@beamelem/GetJacobian.m,
-	  classes/@beamelem/GetJacobianDeterminant.m,
-	  classes/@beamelem/GetJacobianInvert.m,
-	  classes/@beamelem/GetNodalFunctions.m,
-	  classes/@beamelem/GetNodalFunctionsDerivativesBasic.m,
-	  classes/@beamelem/GetNodalFunctionsDerivativesParams.m,
-	  classes/@beamelem/GetParameterValue.m,
-	  classes/@beamelem/beamelem.m, classes/@beamelem/display.m,
-	  classes/@beamelem/getgriddata.m, classes/@beamelem/subsasgn.m,
-	  classes/@beamelem/subsref.m,
-	  classes/@continuous_design/continuous_design.m,
-	  classes/@continuous_design/display.m,
-	  classes/@continuous_state/continuous_state.m,
-	  classes/@continuous_state/display.m,
-	  classes/@elemmatrix/AddElemMatrix.m,
-	  classes/@elemmatrix/display.m, classes/@elemmatrix/elemmatrix.m,
-	  classes/@elemmatrix/subsasgn.m, classes/@elemmatrix/subsref.m,
-	  classes/@elemvector/AddElemVector.m,
-	  classes/@elemvector/display.m, classes/@elemvector/elemvector.m,
-	  classes/@elemvector/subsasgn.m, classes/@elemvector/subsref.m,
-	  classes/@globalmatrix/AddElemMatrix.m,
-	  classes/@globalmatrix/display.m,
-	  classes/@globalmatrix/globalmatrix.m,
-	  classes/@globalmatrix/subsasgn.m,
-	  classes/@globalmatrix/subsref.m,
-	  classes/@globalvector/AddElemVector.m,
-	  classes/@globalvector/display.m,
-	  classes/@globalvector/globalvector.m,
-	  classes/@globalvector/subsasgn.m,
-	  classes/@globalvector/subsref.m,
-	  classes/@icefront/CreatePVector.m,
-	  classes/@icefront/PenaltyConstrain.m,
-	  classes/@icefront/PenaltyCreateKMatrix.m,
-	  classes/@icefront/PenaltyCreatePVector.m,
-	  classes/@icefront/display.m, classes/@icefront/icefront.m,
-	  classes/@icefront/subsasgn.m, classes/@icefront/subsref.m,
-	  classes/@least_squares_term/display.m,
-	  classes/@least_squares_term/least_squares_term.m,
-	  classes/@matice/GetViscosity2.m,
-	  classes/@matice/GetViscosity2d.m,
-	  classes/@matice/GetViscosity3d.m, classes/@matice/display.m,
-	  classes/@matice/matice.m, classes/@matice/subsasgn.m,
-	  classes/@matice/subsref.m, classes/@matpar/display.m,
-	  classes/@matpar/matpar.m, classes/@matpar/subsasgn.m,
-	  classes/@matpar/subsref.m, classes/@model/activaterepository.m,
-	  classes/@model/deletemodel.m, classes/@model/display.m,
-	  classes/@model/fieldcount.m, classes/@model/get.m,
-	  classes/@model/model.m, classes/@model/set.m,
-	  classes/@model/structtomodel.m, classes/@model/subsasgn.m,
-	  classes/@model/subsref.m, classes/@node/display.m,
-	  classes/@node/node.m, classes/@node/subsasgn.m,
-	  classes/@node/subsref.m,
-	  classes/@nonlinear_equality_constraint/display.m,
-	  classes/@nonlinear_equality_constraint/nonlinear_equality_constraint.m,
-	  classes/@nonlinear_inequality_constraint/display.m,
-	  classes/@nonlinear_inequality_constraint/nonlinear_inequality_constraint.m,
-	  classes/@normal_uncertain/display.m,
-	  classes/@normal_uncertain/normal_uncertain.m,
-	  classes/@objective_function/display.m,
-	  classes/@objective_function/objective_function.m,
-	  classes/@pengrid/CreatePVector.m,
-	  classes/@pengrid/PenaltyConstrain.m,
-	  classes/@pengrid/PenaltyCreateKMatrix.m,
-	  classes/@pengrid/PenaltyCreatePVector.m,
-	  classes/@pengrid/display.m, classes/@pengrid/pengrid.m,
-	  classes/@pengrid/subsasgn.m, classes/@pengrid/subsref.m,
-	  classes/@penpair/CreatePVector.m,
-	  classes/@penpair/PenaltyConstrain.m,
-	  classes/@penpair/PenaltyCreateKMatrix.m,
-	  classes/@penpair/PenaltyCreatePVector.m,
-	  classes/@penpair/display.m, classes/@penpair/penpair.m,
-	  classes/@penpair/subsasgn.m, classes/@penpair/subsref.m,
-	  classes/@pentaelem/CreateKMatrix.m,
-	  classes/@pentaelem/CreateKMatrix.mexa64,
-	  classes/@pentaelem/CreatePVector.m,
-	  classes/@pentaelem/CreatePVector.mexa64,
-	  classes/@pentaelem/DeviatoricStress.m,
-	  classes/@pentaelem/GetBStokes.m, classes/@pentaelem/GetB_advec.m,
-	  classes/@pentaelem/GetB_conduct.m,
-	  classes/@pentaelem/GetB_horiz.m, classes/@pentaelem/GetB_vert.m,
-	  classes/@pentaelem/GetBprimeStokes.m,
-	  classes/@pentaelem/GetBprime_advec.m,
-	  classes/@pentaelem/GetBprime_horiz.m,
-	  classes/@pentaelem/GetBprime_vert.m,
-	  classes/@pentaelem/GetJacobian.m,
-	  classes/@pentaelem/GetJacobianDeterminant.m,
-	  classes/@pentaelem/GetJacobianInvert.m,
-	  classes/@pentaelem/GetNodalFunctions.m,
-	  classes/@pentaelem/GetNodalFunctionsBubbleStokes.m,
-	  classes/@pentaelem/GetNodalFunctionsDerivativesBasic.m,
-	  classes/@pentaelem/GetNodalFunctionsDerivativesBasicStokes.m,
-	  classes/@pentaelem/GetNodalFunctionsDerivativesParams.m,
-	  classes/@pentaelem/GetNodalFunctionsDerivativesParamsStokes.m,
-	  classes/@pentaelem/GetNodalFunctionsStokes.m,
-	  classes/@pentaelem/GetParameterDerivativeValue.m,
-	  classes/@pentaelem/GetParameterValue.m,
-	  classes/@pentaelem/GetParameterValueStokes.m,
-	  classes/@pentaelem/GetStrainRate.m,
-	  classes/@pentaelem/GetStrainRateStokes.m,
-	  classes/@pentaelem/PentaCollapseIntoTriaMatrix.m,
-	  classes/@pentaelem/PentaCollapseIntoTriaVector.m,
-	  classes/@pentaelem/ReduceMatrixStokes.m,
-	  classes/@pentaelem/ReduceVectorStokes.m,
-	  classes/@pentaelem/StrainRate.m, classes/@pentaelem/Stress.m,
-	  classes/@pentaelem/StressBed.m,
-	  classes/@pentaelem/StressSurface.m,
-	  classes/@pentaelem/ViscousHeating.m,
-	  classes/@pentaelem/display.m, classes/@pentaelem/getgriddata.m,
-	  classes/@pentaelem/pentaelem.m, classes/@pentaelem/subsasgn.m,
-	  classes/@pentaelem/subsref.m,
-	  classes/@response_function/display.m,
-	  classes/@response_function/response_function.m,
-	  classes/@rgb/display.m, classes/@rgb/rgb.m,
-	  classes/@rgb/subsasgn.m, classes/@rgb/subsref.m,
-	  classes/@singelem/CreateKMatrix.m,
-	  classes/@singelem/CreatePVector.m, classes/@singelem/display.m,
-	  classes/@singelem/singelem.m, classes/@singelem/subsasgn.m,
-	  classes/@singelem/subsref.m, classes/@spc/display.m,
-	  classes/@spc/spc.m, classes/@spc/subsasgn.m,
-	  classes/@spc/subsref.m, classes/@tetraelem/GetJacobian.m,
-	  classes/@tetraelem/GetJacobianDeterminant.m,
-	  classes/@triaelem/CreateKMatrix.m,
-	  classes/@triaelem/CreateKMatrix.mexa64,
-	  classes/@triaelem/CreatePVector.m,
-	  classes/@triaelem/DeviatoricStress.m, classes/@triaelem/GetB.m,
-	  classes/@triaelem/GetB_prog.m, classes/@triaelem/GetBprime.m,
-	  classes/@triaelem/GetBprime_prog.m,
-	  classes/@triaelem/GetJacobian.m,
-	  classes/@triaelem/GetJacobianDeterminant.m,
-	  classes/@triaelem/GetJacobianInvert.m, classes/@triaelem/GetL.m,
-	  classes/@triaelem/GetLStokes.m,
-	  classes/@triaelem/GetLprimeStokes.m,
-	  classes/@triaelem/GetNodalFunctions.m,
-	  classes/@triaelem/GetNodalFunctionsDerivativesBasic.m,
-	  classes/@triaelem/GetNodalFunctionsDerivativesParams.m,
-	  classes/@triaelem/GetParameterDerivativeValue.m,
-	  classes/@triaelem/GetParameterValue.m,
-	  classes/@triaelem/GetStrainRate.m,
-	  classes/@triaelem/StrainRate.m, classes/@triaelem/Stress.m,
-	  classes/@triaelem/ViscousHeating.m, classes/@triaelem/display.m,
-	  classes/@triaelem/getgriddata.m, classes/@triaelem/subsasgn.m,
-	  classes/@triaelem/subsref.m, classes/@triaelem/triaelem.m,
-	  classes/public/BuildQueueingScript.m,
-	  classes/public/BuildQueueingScriptGeneric.m,
-	  classes/public/BuildQueueingScriptcosmos.m,
-	  classes/public/BuildQueueingScriptgemini.m,
-	  classes/public/DepthAverage.m, classes/public/LaunchQueueJob.m,
-	  classes/public/LaunchQueueJobGeneric.m,
-	  classes/public/LaunchQueueJobcosmos.m,
-	  classes/public/LaunchQueueJobgemini.m,
-	  classes/public/QueueJobPeek.m,
-	  classes/public/QueueJobPeekGeneric.m, classes/public/README,
-	  classes/public/ReadData.m, classes/public/SectionValues.m,
-	  classes/public/ThicknessCorrection.m, classes/public/WriteData.m,
-	  classes/public/addnote.m, classes/public/area.m,
-	  classes/public/averageconnectivity.m, classes/public/averaging.m,
-	  classes/public/balvel.m, classes/public/basalstress.m,
-	  classes/public/basevert.m, classes/public/buildoverlay.m,
-	  classes/public/buildoverlaycolorbar.m, classes/public/collapse.m,
-	  classes/public/deepcopy.m, classes/public/displaybc.m,
-	  classes/public/displaycontrol.m, classes/public/displayexppar.m,
-	  classes/public/displaymaterials.m, classes/public/displaymesh.m,
-	  classes/public/displayobservations.m,
-	  classes/public/displayparallel.m,
-	  classes/public/displayparameters.m, classes/public/displayqmu.m,
-	  classes/public/displayresults.m,
-	  classes/public/displaysolutionparameters.m,
-	  classes/public/domaintomesh.m, classes/public/drivingstress.m,
-	  classes/public/export.m, classes/public/extrude.m,
-	  classes/public/fieldcount.m, classes/public/geography.m,
-	  classes/public/ismodelselfconsistent.m,
-	  classes/public/isresultconsistent.m,
-	  classes/public/loadresultsfromcluster.m,
-	  classes/public/loadresultsfromdisk.m, classes/public/marshall.m,
-	  classes/public/mesh.m, classes/public/mesh2.m,
-	  classes/public/meshadaptation.m, classes/public/meshexprefine.m,
-	  classes/public/meshprocessrifts.m, classes/public/meshrefine.m,
-	  classes/public/model2ocmodel.m, classes/public/modelextract.m,
-	  classes/public/modelzoom.m, classes/public/parameterize.m,
-	  classes/public/parseresultsfromdisk.m, classes/public/peek.m,
-	  classes/public/plug.m, classes/public/preparerun.m,
-	  classes/public/printmodel.m, classes/public/project2d.m,
-	  classes/public/project3d.m, classes/public/radarpower.m,
-	  classes/public/recover_areas.m, classes/public/removeholes.m,
-	  classes/public/rifttipsrefine.m,
-	  classes/public/setelementstype.m, classes/public/shear2d.m,
-	  classes/public/shearnorm2d.m, classes/public/slope.m,
-	  classes/public/solve.m, classes/public/solveparallel.m,
-	  classes/public/solversettoasm.m,
-	  classes/public/solversettomumps.m,
-	  classes/public/solversettosor.m, classes/public/structtomodel.m,
-	  classes/public/thicknessevolution.m, classes/public/todo,
-	  classes/public/waitonlock.m, classes/public/plot/applyoptions.m,
-	  classes/public/plot/imagescnan.m,
-	  classes/public/plot/latlonoverlay.m,
-	  classes/public/plot/northarrow.m,
-	  classes/public/plot/parse_options.m,
-	  classes/public/plot/plot_basaldrag.m,
-	  classes/public/plot/plot_boundaries.m,
-	  classes/public/plot/plot_contour.m,
-	  classes/public/plot/plot_drivingstress.m,
-	  classes/public/plot/plot_elementnumbering.m,
-	  classes/public/plot/plot_elementstype.m,
-	  classes/public/plot/plot_gridnumbering.m,
-	  classes/public/plot/plot_highlightelements.m,
-	  classes/public/plot/plot_highlightgrids.m,
-	  classes/public/plot/plot_importancefactors.m,
-	  classes/public/plot/plot_mesh.m,
-	  classes/public/plot/plot_overlay.m,
-	  classes/public/plot/plot_penalties.m,
-	  classes/public/plot/plot_quiver.m,
-	  classes/public/plot/plot_quiver3.m,
-	  classes/public/plot/plot_quivervel.m,
-	  classes/public/plot/plot_riftpenetration.m,
-	  classes/public/plot/plot_riftrelvel.m,
-	  classes/public/plot/plot_riftvel.m,
-	  classes/public/plot/plot_sarpwr.m,
-	  classes/public/plot/plot_section.m,
-	  classes/public/plot/plot_segmentnumbering.m,
-	  classes/public/plot/plot_segmentonneumann.m,
-	  classes/public/plot/plot_tensor.m,
-	  classes/public/plot/plot_tensor_components.m,
-	  classes/public/plot/plot_tensor_principal.m,
-	  classes/public/plot/plot_tensor_principalaxis.m,
-	  classes/public/plot/plot_thermaltransient_results.m,
-	  classes/public/plot/plot_transient_movie.m,
-	  classes/public/plot/plot_transient_results.m,
-	  classes/public/plot/plot_unit.m,
-	  classes/public/plot/plotanalyse.m, classes/public/plot/plotdoc.m,
-	  classes/public/plot/plotmodel.m,
-	  classes/public/plot/processdata.m,
-	  classes/public/plot/processmesh.m,
-	  classes/public/plot/recover_plot_options.m,
-	  classes/public/plot/scaleruler.m, classes/public/plot/undoplot.m,
-	  solutions/ice/BuildGridSets.m, solutions/ice/CreateFemModel.m,
-	  solutions/ice/DeviatoricStressCompute.m,
-	  solutions/ice/DiagnosticSolutionType.m, solutions/ice/Dof.m,
-	  solutions/ice/GetNumberOfActiveElements.m,
-	  solutions/ice/HorizontalVelocityDepthAverage.m,
-	  solutions/ice/IceNormalizeconstraints.m,
-	  solutions/ice/IcePenaltyConstraints.m,
-	  solutions/ice/IceReducematrix.m,
-	  solutions/ice/IceReducematrixfromgtof.m,
-	  solutions/ice/IceReducerightside.m, solutions/ice/Loadresults.m,
-	  solutions/ice/Mergesolution_g.m, solutions/ice/ModelProcessor.m,
-	  solutions/ice/ModelProcessorDiagnosticBaseVert.m,
-	  solutions/ice/ModelProcessorDiagnosticHoriz.m,
-	  solutions/ice/ModelProcessorDiagnosticHutter.m,
-	  solutions/ice/ModelProcessorDiagnosticStokes.m,
-	  solutions/ice/ModelProcessorDiagnosticVert.m,
-	  solutions/ice/ModelProcessorMelting.m,
-	  solutions/ice/ModelProcessorPrognostic.m,
-	  solutions/ice/ModelProcessorSlopeCompute.m,
-	  solutions/ice/ModelProcessorThermal.m, solutions/ice/MpcGrids.m,
-	  solutions/ice/PartitioningVector.m,
-	  solutions/ice/PenaltySystemMatrices.m,
-	  solutions/ice/PressureElemCompute.m,
-	  solutions/ice/Reducevector_g.m,
-	  solutions/ice/SetStructureField.m, solutions/ice/SetupParams.m,
-	  solutions/ice/ShiftLayers.m, solutions/ice/SpcGrids.m,
-	  solutions/ice/StrainRateCompute.m,
-	  solutions/ice/StressBedCompute.m, solutions/ice/StressCompute.m,
-	  solutions/ice/StressSurfaceCompute.m,
-	  solutions/ice/SystemMatrices.m, solutions/ice/TimeStepping.m,
-	  solutions/ice/UpdateGeometry.m,
-	  solutions/ice/UpdateGridPosition.m, solutions/ice/UpdateMesh.m,
-	  solutions/ice/VelocityExtrude.m,
-	  solutions/ice/ViscousHeatingCompute.m, solutions/ice/debug.m,
-	  solutions/ice/debug2.m, solutions/ice/getdofcount.m,
-	  solutions/ice/huttercompute.m, solutions/ice/icediagnostic.m,
-	  solutions/ice/icediagnostic2d.m, solutions/ice/icediagnostic3d.m,
-	  solutions/ice/icediagnostic_core_linear.m,
-	  solutions/ice/icediagnostic_core_nonlinear.m,
-	  solutions/ice/icediagnostic_wrapper.m, solutions/ice/iceglobal.m,
-	  solutions/ice/icemelting_core.m, solutions/ice/iceparameters.m,
-	  solutions/ice/iceparameters_wrapper.m,
-	  solutions/ice/iceprognostic.m,
-	  solutions/ice/iceprognostic_core.m,
-	  solutions/ice/iceprognostic_wrapper.m,
-	  solutions/ice/icethermal.m, solutions/ice/icethermal_core.m,
-	  solutions/ice/icethermal_wrapper.m, solutions/ice/icetransient.m,
-	  solutions/ice/icetransient2d.m, solutions/ice/icetransient3d.m,
-	  solutions/ice/icetransient_wrapper.m,
-	  solutions/ice/slopecompute.m, solutions/macayeal/bar_maker.m,
-	  solutions/macayeal/buildicefrontnormal.m,
-	  solutions/macayeal/c_velfinder.m,
-	  solutions/macayeal/create_el2nod_matrices.m,
-	  solutions/macayeal/flowlaw.m, solutions/macayeal/grad_J_flow.m,
-	  solutions/macayeal/macayealcontrol.m,
-	  solutions/macayeal/macayealdiagnostic.m,
-	  solutions/macayeal/objectivefunction_C_flow.m,
-	  solutions/macayeal/setup_control.m, solutions/macayeal/shape.m,
-	  solutions/macayeal/shear.m, solutions/macayeal/stress.m,
-	  solutions/macayeal/visc_grad.m, solutions/macayeal/viscosity.m,
-	  utils/genpath_ice.m, utils/Antarctica/README,
-	  utils/Antarctica/antcreatewrappedmap.m,
-	  utils/Antarctica/antimread.m,
-	  utils/Antarctica/antlatlonoverlay.m, utils/Antarctica/antmovie.m,
-	  utils/Antarctica/antoutline.m, utils/Antarctica/antoverlay.m,
-	  utils/Antarctica/antoverlay2.m, utils/Antarctica/antscale.m,
-	  utils/Antarctica/antzoom.m, utils/Array/allempty.m,
-	  utils/Array/allnan.m, utils/Array/string_dim.m,
-	  utils/Array/string_vec.m, utils/Cluster/clusterreq.m,
-	  utils/Computation/runtime.m,
-	  utils/Computation/sparsity_compute.m,
-	  utils/Cracks/contour_icefront.m, utils/Cracks/contour_maker.m,
-	  utils/Cracks/exist_by_names.m, utils/Cracks/find_around.m,
-	  utils/Cracks/find_coord.m, utils/Cracks/find_coord_matrix.m,
-	  utils/Cracks/find_line.m, utils/Cracks/icefront_maker.m,
-	  utils/Cracks/index_builder.m, utils/Cracks/index_builder2.m,
-	  utils/Cracks/locate.m, utils/Cracks/margin_locator.m,
-	  utils/Cracks/mesh_creator_2d.m, utils/Cracks/meshdensitygen.m,
-	  utils/Cracks/names_function.m, utils/Cracks/perim_curve.m,
-	  utils/Cracks/void_fill.m, utils/Cracks/void_fill1d.m,
-	  utils/Cracks/void_fill_noxy.m, utils/DataProcessing/addtrack.m,
-	  utils/DataProcessing/data_processing_tool.fig,
-	  utils/DataProcessing/data_processing_tool.m, utils/Err/erfn.m,
-	  utils/Err/erfp.m, utils/Exp/expboxgen.m,
-	  utils/Exp/expconcatenate.m, utils/Exp/expcreatecircle.m,
-	  utils/Exp/expcreatecontour.m, utils/Exp/expcreateprofile.m,
-	  utils/Exp/expcut.m, utils/Exp/expdisp.m, utils/Exp/expdoc.m,
-	  utils/Exp/expgen.m, utils/Exp/explink.m, utils/Exp/expmaster.m,
-	  utils/Exp/expselect.m, utils/Exp/ginputquick.m,
-	  utils/Exp/zinput.m, utils/Exp/manipulation/addendprofile.m,
-	  utils/Exp/manipulation/addinsideprofile.m,
-	  utils/Exp/manipulation/addprofile.m,
-	  utils/Exp/manipulation/closeprofile.m,
-	  utils/Exp/manipulation/closestpoint.m,
-	  utils/Exp/manipulation/closestsegment.m,
-	  utils/Exp/manipulation/cutarea.m,
-	  utils/Exp/manipulation/cutprofile.m,
-	  utils/Exp/manipulation/mergeprofiles.m,
-	  utils/Exp/manipulation/modifyposition.m,
-	  utils/Exp/manipulation/removepoints.m,
-	  utils/Exp/manipulation/removeprofile.m,
-	  utils/Exp/manipulation/removeseveralpoints.m,
-	  utils/Exp/manipulation/undoplots.m,
-	  utils/Exp/readwrite/expread.m, utils/Exp/readwrite/expwrite.m,
-	  utils/Exp/readwrite/expwriteasvertices.m,
-	  utils/Exp/readwrite/newline.m, utils/Exp/readwrite/put_file.m,
-	  utils/Exp/readwrite/read_file.m, utils/Exp/readwrite/readfile.m,
-	  utils/Exp/readwrite/readline.m, utils/Exp/readwrite/writefile.m,
-	  utils/Find/locate.m, utils/Geometry/SegIntersect.m,
-	  utils/Geometry/find_point.m, utils/Hulls/inhull.m,
-	  utils/Hulls/insidehull.m, utils/Hulls/interval.m,
-	  utils/Hulls/intsecl.m, utils/Hulls/intsecpl.m,
-	  utils/Hulls/iscross.m, utils/Hulls/isinpoly.m,
-	  utils/Hulls/isinpolylarge.m, utils/Hulls/ispolygon.m,
-	  utils/Hulls/linechk.m, utils/ImageProcessing/gradient_perso.m,
-	  utils/ImageProcessing/im_resize.m,
-	  utils/ImageProcessing/mean_congrid.m,
-	  utils/ImageProcessing/rebin.m,
-	  utils/Interp/griddata_grid_to_mesh.m,
-	  utils/Interp/griddata_grid_to_mesh_completer.m,
-	  utils/Interp/griddata_grid_to_mesh_nan.m,
-	  utils/Interp/griddata_mesh_to_grid.m,
-	  utils/Interp/griddata_mesh_to_mesh.m,
-	  utils/Interp/griddata_mesh_to_mesh_3d.m,
-	  utils/Interp/griddata_nearest.m,
-	  utils/Interp/griddata_nearest_matrix.m,
-	  utils/Interp/griddata_nearest_nan.m,
-	  utils/Interp/griddata_nearest_vector.m,
-	  utils/Interp/griddata_perso.m, utils/LatLong/ll2xy.m,
-	  utils/LatLong/mapll.m, utils/LatLong/mapxy.m,
-	  utils/LatLong/xyscale_south.m, utils/Math/fixdec.m,
-	  utils/Meca/effective_value.m, utils/Meca/glen_coefficients.m,
-	  utils/Meca/lithostaticpressure.m, utils/Meca/paterson.m,
-	  utils/Meca/tau_principal.m, utils/Mesh/BuildAdaptedMesh.m,
-	  utils/Miscellaneous/create_region.m,
-	  utils/Miscellaneous/findarg.m, utils/Miscellaneous/round_ice.m,
-	  utils/Model/ProcessParallelParametersFromCieloRc.m,
-	  utils/Model/loadmodel.m, utils/Nightly/nightlyrun.m,
-	  utils/Nightly/nightlyruncielo.m, utils/Plot/squarezoom.m,
-	  utils/Shell/issmdir.m, utils/Sound/beep_ice.m,
-	  utils/String/discardnum.m, utils/String/logoutput.m,
-	  utils/String/strsplit.m, utils/UpdateArchive/updatearchive.m,
-	  utils/Visu/plot_results.m, utils/Visu/twofig.m, utils/Visu/vi.m,
-	  utils/Visu/vic.m, utils/Visu/vii.m, utils/Visu/vim.m,
-	  utils/Visu/vim3.m: reorg
-
-2009-04-03 15:43  morlighe
-
-	* src/: c/MakefileIce, perl/DiagnosticAlter.pl: reorg
-
-2009-04-03 15:42  morlighe
-
-	* src/c/shared/: MakefileIce, Exp/IsInPoly.c, Ice/Contour.c,
-	  Ice/Contour.h, Ice/CreateElemMatrix.c, Ice/CreateElemVector.c,
-	  Ice/GaussPenta.c, Ice/GaussSegment.c, Ice/GaussTria.c,
-	  Ice/GetBFromTemperature.c, Ice/GetParameterList.c,
-	  Ice/Getalpha2FromFrictionParameters.c, Ice/Ice.h,
-	  Ice/MatrixUtils.c, Ice/SetDofs.c, Ice/SharedPentaElem.c,
-	  Ice/SharedTriaElem.c, Ice/getgriddata.c, Ice/recover_input.c: Big
-	  reorg
-
-2009-04-03 15:39  morlighe
-
-	* src/mex/MakefileIce: big reorg
-
-2009-04-03 15:37  morlighe
-
-	* src/mex/: ArgusContourToMesh/ArgusContourToMesh.m,
-	  ArgusContourToMesh/Makefile, DataInterp/DataInterp.m,
-	  DataInterp/Makefile, HoleFiller/Makefile, MeshPartition/Makefile,
-	  SetStructureField/Makefile,
-	  SetStructureField/SetStructureField.c,
-	  SetStructureField/SetStructureField.h, TriMesh/Makefile,
-	  TriMeshProcessRifts/Makefile, TriMeshRefine/Makefile,
-	  Visu/Makefile, pentaelem/CreateKMatrix.c,
-	  pentaelem/CreateKMatrix.h, pentaelem/CreatePVector.c,
-	  pentaelem/CreatePVector.h, pentaelem/Makefile,
-	  triaelem/CreateKMatrix.c, triaelem/CreateKMatrix.h,
-	  triaelem/Makefile: Big Reorg
-
-2009-04-03 15:29  morlighe
-
-	* src/c/shared/sharedice.h: Missing file
-
-2009-03-18 12:06  larour
-
-	* MakefileIce: diverse.
-
-2009-03-18 12:05  larour
-
-	* MakefileIce: Moved Makefile to MakefileIce
-
-2009-03-18 12:04  larour
-
-	* src/MakefileIce: Missing links
-
-2009-03-18 12:02  larour
-
-	* src/c/: MakefileIce, ArgusContourToMeshx/ArgusContourToMesh.h,
-	  ArgusContourToMeshx/ArgusContourToMeshx.c,
-	  ArgusContourToMeshx/Contour.c, ArgusContourToMeshx/Contour.h,
-	  ArgusContourToMeshx/Makefile, HoleFillerx/HoleFiller.h,
-	  HoleFillerx/HoleFillerCrippen.c, HoleFillerx/HoleFillerx.c,
-	  HoleFillerx/Makefile, IceDataInterpx/DataInterp.h,
-	  IceDataInterpx/DataInterpx.c, IceDataInterpx/Makefile,
-	  MeshPartitionx/Makefile, MeshPartitionx/MeshPartition.h,
-	  MeshPartitionx/MeshPartitionx.c, Visux/Makefile, Visux/Visu.h,
-	  Visux/Visux.c, shared/MakefileIce, shared/Exp/ExpIce.h,
-	  shared/TriMesh/TriMesh.h: x code taken out of modules
-
-2009-03-18 11:57  larour
-
-	* src/mex/: DataInterp/DataInterp.c, DataInterp/DataInterp.h,
-	  DataInterp/DataInterpx.c, DataInterp/Makefile,
-	  HoleFiller/HoleFiller.c, MeshPartition/MeshPartition.c: Wrong
-	  header files
-
-2009-03-18 11:53  larour
-
-	* src/mex/: ArgusContourToMesh/ArgusContourToMesh.c,
-	  ArgusContourToMesh/ArgusContourToMesh.h,
-	  ArgusContourToMesh/ArgusContourToMeshx.c,
-	  ArgusContourToMesh/Contour.c, ArgusContourToMesh/Contour.h,
-	  ArgusContourToMesh/IsInPoly.c, ArgusContourToMesh/Makefile,
-	  HoleFiller/HoleFiller.h, HoleFiller/HoleFillerCrippen.c,
-	  HoleFiller/HoleFillerx.c, HoleFiller/Makefile,
-	  MeshPartition/Makefile, MeshPartition/MeshPartition.h,
-	  MeshPartition/MeshPartitionx.c, TriMesh/TriMesh.c,
-	  TriMeshProcessRifts/TriMeshProcessRifts.c,
-	  TriMeshRefine/TriMeshRefine.c, Visu/Makefile, Visu/Visu.c,
-	  Visu/Visu.h, Visu/Visux.c: Took out x code layer
-
-2009-03-18 11:06  larour
-
-	* etc/config_linux64.mk: [no log message]
-
-2009-03-18 11:05  larour
-
-	* etc/config_linux64.mk: Replaced ICE by ISSM_DIR
-
-2009-03-18 10:56  larour
-
-	* src/c/shared/TriMesh/GridInsideHole.c: minor.
-
-2009-03-18 10:38  morlighe
-
-	* scripts/archive.sh: fixed archive.sh
-
-2009-03-18 10:37  larour
-
-	* src/MakefileIce: Moved Makefile.issm to MakefileIce
-
-2009-03-18 10:36  larour
-
-	* src/mex/: Makefile, MakefileIce: Moved Makefile to MakefileIce
-
-2009-03-18 10:35  larour
-
-	* src/mex/: TriMesh/Makefile, TriMesh/TriMesh.c,
-	  TriMeshProcessRifts/Makefile,
-	  TriMeshProcessRifts/TriMeshProcessRifts.c,
-	  TriMeshRefine/Makefile, TriMeshRefine/TriMeshRefine.c: Now
-	  references sharedice.a library.
-
-2009-03-18 10:32  larour
-
-	* src/c/shared/: MakefileIce, Exp/DomainOutlineReadIce.c,
-	  Exp/ExpIce.h, TriMesh/AssociateSegmentToElement.c,
-	  TriMesh/GridInsideHole.c, TriMesh/Makefile,
-	  TriMesh/OrderSegments.c, TriMesh/SplitMeshForRifts.c,
-	  TriMesh/TriMesh.h, TriMesh/TriMeshUtils.c: Shared is not in
-	  shared/
-
-2009-03-18 10:32  morlighe
-
-	* archive.sh: moved to scripts
-
-2009-03-18 08:31  larour
-
-	* install.sh: Gone baby gone... Niac niac.
-
-2009-03-18 08:25  larour
-
-	* mailinglist, cron/mailinglist: Gone to cron
-
-2009-03-18 08:23  larour
-
-	* todo: Gone to Trash
-
-2009-03-18 08:23  larour
-
-	* startup.m, bin/startup.m: Moved to bin
-
-2009-03-18 08:09  larour
-
-	* startup.m: issmdir could not be found! (thanks Mathieu!)
-
-2009-03-18 08:03  larour
-
-	* scripts/archive.sh: Moved from root directory
-
-2009-03-18 07:50  larour
-
-	* cron/linux_cronfile: Updated Cron to cron
-
-2009-03-18 07:41  larour
-
-	* etc/environment_variables: Replaced Libs by libs.
-
-2009-03-18 07:21  larour
-
-	* src/pro/: bytscl.m, plot_cielo.pro: From Utils to pro/ for Idl
-	  utils
-
-2009-03-18 07:14  larour
-
-	* src/mex/: Makefile, ArgusContourToMesh/ArgusContourToMesh.c,
-	  ArgusContourToMesh/ArgusContourToMesh.h,
-	  ArgusContourToMesh/ArgusContourToMesh.m,
-	  ArgusContourToMesh/ArgusContourToMeshx.c,
-	  ArgusContourToMesh/Contour.c, ArgusContourToMesh/Contour.h,
-	  ArgusContourToMesh/IsInPoly.c, ArgusContourToMesh/Makefile,
-	  DataInterp/DataInterp.c, DataInterp/DataInterp.h,
-	  DataInterp/DataInterp.m, DataInterp/DataInterpx.c,
-	  DataInterp/Makefile, HoleFiller/HoleFiller.c,
-	  HoleFiller/HoleFiller.h, HoleFiller/HoleFillerCrippen.c,
-	  HoleFiller/HoleFillerx.c, HoleFiller/Makefile,
-	  MeshPartition/Makefile, MeshPartition/MeshPartition.c,
-	  MeshPartition/MeshPartition.h, MeshPartition/MeshPartitionx.c,
-	  TriMesh/Makefile, TriMesh/TriMesh.c,
-	  TriMeshProcessRifts/Makefile,
-	  TriMeshProcessRifts/TriMeshProcessRifts.c,
-	  TriMeshRefine/Makefile, TriMeshRefine/TriMeshRefine.c,
-	  Visu/Makefile, Visu/Visu.c, Visu/Visu.h, Visu/Visux.c:
-	  Modifications to run in new directory
-
-2009-03-18 06:57  larour
-
-	* etc/: config_linux32.mk, config_linux64.mk, config_mac.mk,
-	  mexopts_v5.sh, mexopts_v76.sh: New path etc/ to mex options file.
-
-2009-03-18 06:52  larour
-
-	* etc/environment.sh: New path to config.
-
-2009-03-18 06:45  larour
-
-	* doc/: Makefile, developperguide.pdf, theoryguide.pdf,
-	  userguide.pdf, theoryguide/Algorithm.png,
-	  theoryguide/Assembly.png, theoryguide/MINI.png,
-	  theoryguide/Makefile, theoryguide/TpmpMb.png,
-	  theoryguide/accumulation.png, theoryguide/barycentric_penta.png,
-	  theoryguide/barycentric_tria.png, theoryguide/bilanmass.png,
-	  theoryguide/friction_geometry.png, theoryguide/friction_kin.png,
-	  theoryguide/geometry3D.png, theoryguide/melting.png,
-	  theoryguide/meshpenalty.png, theoryguide/penalized_vel_2.png,
-	  theoryguide/penalized_vel_3.png, theoryguide/penalties1.png,
-	  theoryguide/pentaelem.png, theoryguide/prog1.png,
-	  theoryguide/prog2.png, theoryguide/progi.png,
-	  theoryguide/quadelem.png, theoryguide/schema1.png,
-	  theoryguide/schema4.png, theoryguide/schema5.png,
-	  theoryguide/segment.png, theoryguide/tetraelem.png,
-	  theoryguide/theoryguide.tex, theoryguide/thermal_loop.png,
-	  theoryguide/triaelem.png, userguide/Amery.png,
-	  userguide/Antarctica.png, userguide/Makefile,
-	  userguide/argus.png, userguide/argus_DO.png,
-	  userguide/argus_Front.png, userguide/argus_GL.png,
-	  userguide/argus_Islands.png, userguide/argus_map.png,
-	  userguide/contour.png, userguide/layers.png,
-	  userguide/userguide.tex: Moved Doc to doc
-
-2009-03-18 06:42  larour
-
-	* cron/: README, ice.sh, killingforeign.sh, linux_cronfile,
-	  nightlyrun.sh, tag.sh, testingforeign.sh: Moved Cron to cron
-
-2009-03-18 05:46  larour
-
-	* etc/: Make_default_rules.mk, README, cielo.rc, config_linux32.mk,
-	  config_linux64.mk, config_mac.mk, environment.sh,
-	  environment_variables, mexopts_mac.sh, mexopts_v5.sh,
-	  mexopts_v651.sh, mexopts_v704.sh, mexopts_v76.sh: Moved Etc to
-	  etc
-
-2009-03-17 18:56  larour
-
-	* Makefile, Makefile.issm: Moved Makefile to Makefile.issm to make
-	  room for Cielo makefile.
-
-2009-03-17 18:04  larour
-
-	* README: Diverse
-
-2009-03-17 18:02  larour
-
-	* INSTALL, README: some info
-
-2009-03-17 17:57  larour
-
-	* startup.m: More elegant way to recove ISSM_DIR
-
-2009-03-17 14:32  larour
-
-	* test/test.m: Gone: ignore
-
-2009-03-17 14:29  larour
-
-	* test/test.m: test dir: ignore
-
-2009-03-17 14:28  larour
-
-	* test.m: test: ignore
-
-2009-03-17 14:23  larour
-
-	* test.m: test: ignore
-
-2009-03-17 13:59  larour
-
-	* startup.m: SUITESPARSE moved to Libs/suitesparse
-
-2009-03-17 13:58  larour
-
-	* Makefile: Took out doxygen doc, now in Doc/developperguide/
-	  makefile.
-
-2009-03-17 13:56  larour
-
-	* doxygen.config: c html doc using doxygen, and matlab html doc
-	  using m2html
-
-2009-03-17 12:08  morlighe
-
-	* install.sh: metis is needed by MeshPartition module
-
-2009-03-17 11:55  morlighe
-
-	* install.sh: Added compilation of triangle
-
-2009-03-17 11:48  morlighe
-
-	* install.sh: Added an install.sh file to check that .bashrc is
-	  correclty configured and automated compilation
-
-2009-03-17 08:13  larour
-
-	* README: How to get ISSM to work
-
-2009-03-17 08:12  larour
-
-	* startup.m: Simpler startup file.
-
-2009-03-17 08:10  larour
-
-	* install.sh: Not needed anymore
-
-2009-03-17 07:41  larour
-
-	* Makefile: New modules framework
-
-2009-03-17 07:41  larour
-
-	* archive.sh: Naming
-
-2009-03-13 16:39  larour
-
-	* doxygen.config: Automatic documentation generation.
-
-2009-03-13 11:09  morlighe
-
-	* contributors.txt: added IsInpoly.c contrib
-
-2009-03-13 09:48  morlighe
-
-	* contributors.txt: not used anymore
-
-2009-03-11 17:06  morlighe
-
-	* contributors.txt: updated contributors
-
-2009-03-05 12:22  morlighe
-
-	* install.sh: change startup file first
-
-2009-03-02 16:40  morlighe
-
-	* startup.m: simplified startup.m with genpath_ice
-
-2009-03-02 09:43  larour
-
-	* startup.m: Added dakota directories.
-
-2009-02-28 21:55  larour
-
-	* startup.m: Added responsefunctions
-
-2009-02-24 10:07  morlighe
-
-	* install.sh: Added get number of CPUs and removes make -j 8 for
-	  the first make (compilation fails)
-
-2009-02-23 15:49  larour
-
-	* startup.m: Added Gdal path.
-
-2009-02-23 15:49  larour
-
-	* Makefile, install.sh: Include Gdal compilation.
-
-2009-02-17 13:53  morlighe
-
-	* startup.m: minor
-
-2009-02-17 13:52  morlighe
-
-	* todo: [no log message]
-
-2009-02-17 13:52  morlighe
-
-	* startup.m: Added missing directories in path
-
-2009-02-17 13:51  morlighe
-
-	* Makefile: Added HoleFiller, and Public target
-
-2009-02-17 12:51  larour
-
-	* todo: [no log message]
-
-2009-02-17 12:50  larour
-
-	* startup.m: Added missing directories in path
-
-2009-02-17 12:49  larour
-
-	* Makefile: Added HoleFiller, and Public target
-
-2009-02-11 10:52  morlighe
-
-	* todo: test
-
-2009-02-10 15:32  larour
-
-	* todo: Test4
-
-2009-02-10 15:31  larour
-
-	* todo: Test 3
-
-2009-02-10 15:21  larour
-
-	* todo: test
-
-2009-02-09 10:08  morlighe
-
-	* contributors.txt: minor
-
-2009-02-06 12:11  morlighe
-
-	* startup.m: Added HoleFiller Path
-
-2009-02-06 09:28  morlighe
-
-	* install.sh: Added a script to install everything automatically
-
-2009-02-05 17:41  morlighe
-
-	* todo: as usual
-
-2009-02-05 17:12  morlighe
-
-	* startup.m: bad startup
-
-2009-02-05 16:50  larour
-
-	* contributors.txt, startup.m, todo: Cleanup solutions
-
-2009-02-03 07:51  morlighe
-
-	* startup.m: plot must be added to startup file
-
-2009-02-02 08:15  larour
-
-	* todo: Mathieu?
-
-2009-01-27 09:30  larour
-
-	* contributors.txt: Added contributors list
-
-2009-01-27 09:28  larour
-
-	* Makefile: Added HoleFiller module
-
-2009-01-20 14:53  ala
-
-	* mailinglist: Added Ala's email address.
-
-2009-01-20 07:25  morlighe
-
-	* startup.m: new path is needed for cielo
-
-2009-01-20 07:09  larour
-
-	* mailinglist: Test, ignore
-
-2009-01-19 14:14  larour
-
-	* mailinglist: Test of VCS commit. Ignore.
-
-2009-01-19 14:14  larour
-
-	* mailinglist: Test of VCS commit. Ignore
-
-2009-01-19 11:05  larour
-
-	* Makefile: Replaced path to config from MexConfig to Etc
-
-2008-12-30 08:45  morlighe
-
-	* todo: Added some missing stuff from previous ice1
-
-2008-12-29 11:54  larour
-
-	* startup.m, todo: Some missing stuff from ice2
-
-2008-12-29 09:23  seroussi
-
-	* startup.m: Not needed
-
-2008-12-29 09:04  seroussi
-
-	* startup.m: test
-
-2008-12-29 08:16  morlighe
-
-	* todo: as usual
-
-2008-12-24 10:39  morlighe
-
-	* startup.m: antepenultimate test
-
-2008-12-24 10:28  morlighe
-
-	* startup.m: back
-
-2008-12-24 10:16  morlighe
-
-	* startup.m: check nightly run
-
-2008-12-24 10:13  seroussi
-
-	* mailinglist: removed change
-
-2008-12-24 07:40  seroussi
-
-	* mailinglist: to fix nightly runs and avoid 100 mails
-
-2008-12-22 09:27  morlighe
-
-	* todo: as usual
-
-2008-12-22 07:36  morlighe
-
-	* todo: as usual
-
-2008-12-05 11:33  morlighe
-
-	* todo: commit to be done later
-
-2008-11-18 13:55  morlighe
-
-	* todo: as usual
-
-2008-10-21 14:14  morlighe
-
-	* todo: as usual
-
-2008-10-14 09:02  morlighe
-
-	* todo: as usual
-
-2008-10-13 08:11  morlighe
-
-	* todo: as usual
-
-2008-10-13 08:03  morlighe
-
-	* todo: as usual
-
-2008-09-29 13:22  morlighe
-
-	* todo: as usual
-
-2008-09-26 16:55  larour
-
-	* startup.m: Added model to startup
-
-2008-09-26 10:16  morlighe
-
-	* todo: as usual
-
-2008-09-25 16:01  morlighe
-
-	* todo: as usual
-
-2008-09-25 09:30  seroussi
-
-	* todo: as usual
-
-2008-09-24 13:07  morlighe
-
-	* todo: as usual
-
-2008-09-24 10:52  larour
-
-	* todo: Simplified diagnostic solution
-
-2008-09-16 15:59  morlighe
-
-	* todo: as usual
-
-2008-09-15 12:30  morlighe
-
-	* todo: as usual
-
-2008-09-10 17:06  morlighe
-
-	* todo: to do tomorrow
-
-2008-09-10 16:57  morlighe
-
-	* todo: as usual
-
-2008-09-09 15:57  morlighe
-
-	* todo: as usual
-
-2008-09-09 13:31  morlighe
-
-	* todo: ice shelf basal velocity -> fixed
-
-2008-09-09 11:46  morlighe
-
-	* todo: As usual
-
-2008-09-09 07:46  morlighe
-
-	* todo: as usual
-
-2008-09-08 17:35  morlighe
-
-	* todo: Good luck!
-
-2008-09-08 09:23  seroussi
-
-	* startup.m: minor
-
-2008-09-08 09:22  seroussi
-
-	* startup.m: simplified projections project3d
-
-2008-09-08 08:38  morlighe
-
-	* todo: as usual
-
-2008-09-05 16:31  larour
-
-	* todo: as usual
-
-2008-09-05 15:53  larour
-
-	* todo: Improved transient and steady state thermal solution
-
-2008-09-04 14:21  morlighe
-
-	* todo: as usual
-
-2008-09-04 11:53  morlighe
-
-	* todo: As usual
-
-2008-09-03 16:56  morlighe
-
-	* todo: As usual
-
-2008-09-03 12:23  larour
-
-	* todo: Important
-
-2008-09-03 09:21  morlighe
-
-	* todo: as usual
-
-2008-09-02 16:38  larour
-
-	* todo: New transient solution
-
-2008-09-02 13:08  larour
-
-	* todo: New penalty approach to computation of melting in thermal
-	  solution
-
-2008-09-02 09:20  larour
-
-	* todo: As usual
-
-2008-08-30 07:12  larour
-
-	* todo: As usual
-
-2008-08-29 10:19  larour
-
-	* todo: as usual
-
-2008-08-28 17:05  seroussi
-
-	* todo: updated todo
-
-2008-08-27 13:36  larour
-
-	* todo: Implemented basal vertical velocity solution. Started
-	  thermal solution
-
-2008-08-26 17:10  larour
-
-	* todo: as usual
-
-2008-08-26 14:44  larour
-
-	* todo: Implemented and fixed bugs in vertical solution
-
-2008-08-26 10:54  larour
-
-	* todo: Implemented new 2d-3d modeling. Extended computations of
-	  velocities vertically
-
-2008-08-26 10:52  larour
-
-	* startup.m: Better path
-
-2008-08-25 09:54  larour
-
-	* startup.m: Took out the startup error
-
-2008-08-24 14:39  larour
-
-	* todo: as usual
-
-2008-08-21 17:42  larour
-
-	* startup.m: New startup
-
-2008-08-21 17:38  larour
-
-	* mailinglist: Added mailing list
-
-2008-08-07 10:39  morlighe
-
-	* startup.m: oups...
-
-2008-08-07 10:37  morlighe
-
-	* startup.m: Added a new field md.visualization. If 1:
-	  visualization of each iteration results in icecontrol
-
-2008-08-01 23:36  larour
-
-	* todo: As usual
-
-2008-08-01 12:09  larour
-
-	* startup.m: Public/
-
-2008-07-31 14:08  morlighe
-
-	* startup.m: Same convention for MacAyealdiagnostic and control
-	  (2nu -> nu)
-
-2008-07-25 17:10  larour
-
-	* todo: As usual
-
-2008-07-25 11:35  larour
-
-	* Makefile, todo: Added Makefiles to compiled shared and objects in
-	  'c' code
-
-2008-07-23 08:28  larour
-
-	* startup.m, todo: Missing MeshPartition path
-
-2008-07-21 15:11  larour
-
-	* Makefile: Addedd MeshPartition module.
-
-2008-07-03 22:05  larour
-
-	* todo: As usual
-
-2008-07-01 11:12  larour
-
-	* todo: Added cronjob capabilities
-
-2008-06-30 14:50  seroussi
-
-	* todo: Updated todo
-
-2008-06-30 11:40  larour
-
-	* Makefile: Separated Doc target from all target
-
-2008-06-26 16:17  larour
-
-	* startup.m: Added DataInterp to path
-
-2008-06-26 16:10  larour
-
-	* Makefile: Added DataInterp target
-
-2008-06-17 11:06  larour
-
-	* Makefile: Added top level Makefile to drive overall compilation
-
-2008-06-12 14:44  larour
-
-	* startup.m: Added ArgusContourToMesh module, to run  with
-	  parameterize.m
-
-2008-06-04 10:11  seroussi
-
-	* todo: Update todo
-
-2008-06-03 16:40  larour
-
-	* todo: Some more things to do.
-
-2008-06-03 16:40  larour
-
-	* startup.m: Took out objects from the ICE path, as the @grid class
-	  interferes with the graph2d/grid.m routine.
-
-2008-06-03 11:54  larour
-
-	* todo: Todo
-
-2008-06-03 10:43  larour
-
-	* archive.sh: New clean targets.
-
-2008-06-02 16:24  larour
-
-	* startup.m: Updated paths to solution scripts.
-
-2008-06-02 16:12  larour
-
-	* startup.m: Modified path to Triangle meshing modules.
-
-2008-05-30 11:32  larour
-
-	* todo: Additional task on square model.
-
-2008-05-30 11:18  larour
-
-	* todo: Added cholesky task.
-
-2008-05-30 10:47  larour
-
-	* todo: Todo file. Update as much as needed.
-
-2008-05-29 14:26  seroussi
-
-	* startup.m: Comment on lastwarn
-
-2008-05-29 14:07  morlighe
-
-	* startup.m: fixed problem with startup's warning message
-
-2008-05-29 12:16  larour
-
-	* startup.m: Updated startup.m file for new changes in names of
-	  solution sequences
-
-2008-05-29 11:57  larour
-
-	* startup.m: Improved startup file. Added missing Model in the Ice
-	  path.
-
-2008-05-29 11:54  larour
-
-	* startup.m: Improved startup file
-
-2008-05-29 11:50  larour
-
-	* startup.m: Improved startup file
-
-2008-05-29 11:45  larour
-
-	* startup.m: Improved startup file
-
-2008-05-29 11:42  larour
-
-	* startup.m: Improved startup file
-
-2008-05-29 10:06  morlighe
-
-	* startup.m: [no log message]
-
-2008-05-21 11:08  larour
-
-	* archive.sh: New tar creation routine.
-
-2008-05-21 10:53  larour
-
-	* startup.m: New shuffling of code architecture.
-
-2008-05-21 10:13  larour
-
-	* startup.m: Cleaned up startup file.
-
-2008-04-19 12:33  larour
-
-	* startup.m: Working out of tier3 now.
-
-2008-03-05 13:31  larour
-
-	* startup.m: Too many changes to explain
-
-2007-12-05 14:48  larour
-
-	* Makefile: Not needed for now.
-
-2007-12-05 14:45  larour
-
-	* startup.m: Added windows startup to the existing linux startup
-	  matlab script.
-
-2007-12-05 12:12  larour
-
-	* startup.m: Cleaned up a little bit. Only two paths to setup: for
-	  Cielo, and for Ice codes.
-
-2007-11-27 12:07  larour
-
-	* startup.m: New TriMesh modules, added path.
-
-2007-11-21 18:11  larour
-
-	* startup.m: Added MacAyealControlModel to the matlab path.
-
-2007-11-19 15:25  larour
-
-	* startup.m: Promoted tier3_ice to tier2_ice.
-
-2007-11-18 16:07  larour
-
-	* startup.m: This file should be symbolically linked to the matlab
-	  starting directory.
-
-2007-10-25 09:30  larour
-
-	* Makefile: Ice flow modeling
-
-2007-10-25 09:30  larour
-
-	* Makefile: Initial revision
-
+https://issm.ess.uci.edu:80/trac/issm/timeline
Index: issm/trunk-jpl/awards
===================================================================
--- issm/trunk-jpl/awards	(revision 11024)
+++ 	(revision )
@@ -1,2 +1,0 @@
-beeping award
-Matlab's beeps (for error messages) have been successfully desactivated by Mathieu, with the command "beep off". (Mathieu, December 10th 2010)
Index: issm/trunk-jpl/configure.ac
===================================================================
--- issm/trunk-jpl/configure.ac	(revision 11024)
+++ issm/trunk-jpl/configure.ac	(revision 11026)
@@ -1,3 +1,3 @@
-AC_INIT(ISSM,[1.0], [Eric Larour <eric.larour@jpl.nasa.gov>])
+AC_INIT(ISSM,4.0,issm@jpl.nasa.gov)
 AM_CONFIG_HEADER(config.h)
 AC_CANONICAL_TARGET
Index: issm/trunk-jpl/contributors.txt
===================================================================
--- issm/trunk-jpl/contributors.txt	(revision 11024)
+++ 	(revision )
@@ -1,12 +1,0 @@
-We thank the following contributors for their help in making ISSM better!
-
-Robert Crippen, Jet Propulsion Laboratory.  robbert.crippen@jpl.nasa.gov
-HoleFiller routines to plug incomplete datasets. See HoleFiller module in src/m/matlab/utils
-
-Point Inclusion in Polygon Test (pnpoly.c used in Utils/Arguscontourtomesh/IsInPoly.c)
-W. Randolph Franklin (WRF)
-http://www.ecse.rpi.edu/Homepages/wrf/Research/Short_Notes/pnpoly.html
-
-DACE: A Matlab Kriging toolbox, Søren N.Lophaen, Hans Bruun Nielsen and Jacob
-Søndergaard (Technical University of Denmark)
-http://www2.imm.dtu.dk/~hbn/dace/
Index: issm/trunk-jpl/doc/issmdoc.m
===================================================================
--- issm/trunk-jpl/doc/issmdoc.m	(revision 11024)
+++ issm/trunk-jpl/doc/issmdoc.m	(revision 11026)
@@ -4,9 +4,5 @@
 ISSM_TIER=issmtier;
 
-disp(sprintf('\n%s%s%s','  The following documentations are available in ',ISSM_TIER,'/doc/'));
-disp(sprintf('%s','	   userguide: how to use ISSM, quick tutorial'));
-disp(sprintf('%s','	   theoryguide: theory behind the ISSM models'));
-disp(sprintf('%s','	   validation: test results of ISSM'));
-disp(sprintf('\n%s','  Website: a comprehensive documentation is available on http://www.issm.jpl.nasa.gov'));
+disp(sprintf('\n%s','  A comprehensive documentation is available on http://issm.jpl.nasa.gov'));
 disp(sprintf('\n%s','  Example: how to create a square ice shelf'));
 disp(sprintf('%s','	   go to ',ISSM_TIER,'/examples/SquareIceshelf'));
Index: issm/trunk-jpl/src/c/Container/Elements.cpp
===================================================================
--- issm/trunk-jpl/src/c/Container/Elements.cpp	(revision 11024)
+++ issm/trunk-jpl/src/c/Container/Elements.cpp	(revision 11026)
@@ -187,4 +187,5 @@
 
 	if(!results_as_patches){
+		/*No patch here, we prepare vectors*/
 
 		/*see what the first element of this partition has in stock (this is common to all partitions)*/
Index: issm/trunk-jpl/tidbits
===================================================================
--- issm/trunk-jpl/tidbits	(revision 11024)
+++ 	(revision )
@@ -1,55 +1,0 @@
-There is no technological frontier. (Mathieu, May 5th 2009)
-
-Thierry? Non il est pas la. Son bureau est la ... (Mathieu, May 15th 2009)
-
-Le modeling, c'est comme la cuisine, il faut des bons ingredients. Nous on veut ouvrir un michelin 3 etoiles, pas un macdo. (Eric R, May 20th 2009)
-
-C'est bizarre, ces modeles 3d sont independants de la connectivite... c'est vraiment bizarre ce truc. Je la met a 15, a 50 ou a 500 et le temps de calcul reste le meme.
-2 mois plus tard: on se rend compte que dans extrude.m on met md.connectivity=25; (Mathieu, June 9th 2009)
-
-ca existe pas morronitos! (Mathieu, June 10th 2009)
-
-tu fais tac tac tac tac, soit tu fais shift tac tac (a propos de 'ZZ' au lieu de ':wq')(Mathieu, June 18th 2009)
-
-Eric "quel hmin tu utilises? " Mathieu "Hmin? ben d'y a 2 semaines!" (Mathieu September 2009)
-
-"tu devrais mettre les spc dans le vertical" rep:"Mais il n'y en a pas de spc sur le vertical pour l'instant" (Helene September 23rd 2009)
-
-A propos de pairoptions "bon pour l'instant on voit pas trop la puissance mais ca viendra je pense..." (Mathieu October 6th 2009)
-
-Dimitris "Ala, when do you want to do your presentation? next week, the week after?" answer "let me give you a date in two weeks"
-"but you know, it is a place to present unfinished work!" "I know, I will try to get my work unfinished then..." (Ala October 14th 2009) 
-
-"Bande d'oRignot" (orignaux=moose) (Eric July 22d 2010)
-
-"Eric, ton article il faut le faire mousser" (Eric R March 28th 2011 pers com)
-
-"Mathieu, J'essaye de faire un print et ce ** de matlab veut pas printer:
->> printmodel('Article/figures/PigBamg','png','trim','on','resolution',resolution);
->> ??? Error using ==> print at 310
->> Error using ==> render at 179
->> Bad data returned by HARDCOPY. Not calling IMWRITE.
-Mathieu: regarde resolution, c'est combien?
-Eric: 9900 (NDLR: ca ne doit pas depasser 3 ou 4!)... ca ca fait une image de 500Go au moins, il a confondu avec la resolution du maillage" (Eric L April 12th 2011)
-
-"Bon, j'irais bien manger mes seigneurs. OK adios." Still no clue on what that means. (Mathieu, April 28th 2011).
-
-On appelle en fait recursivement les functions d'inputs. C'est simple, c'est beau, c'est bosch (Mathieu, June 2011).
-
-ISSM,
-  You can start to make a new working directory on your local machine, and 
-  checkout from the new server. Here are the steps:
-  1. Login to your working machine
-  2. cd your_working_dir
-  3. checkout
-  svn co https://issm-svn.jpl.nasa.gov:80/svn/issm/issm  .
-  .........
-  Thanks and have a good weekend,
-  George
-Hi George,
-	At step 3, I got the error "checkout command not found".
-	Please advise.  Thanks
-	-Daria
-(Daria, November 19th 2011)
-
-
