Index: /issm/trunk/doc/Makefile
===================================================================
--- /issm/trunk/doc/Makefile	(revision 11)
+++ /issm/trunk/doc/Makefile	(revision 11)
@@ -0,0 +1,12 @@
+#Makefile for developper guide 
+
+all: matlabhtml chtml
+
+matlabhtml:
+	./doc_m/creatematlabhtmldoc.sh
+
+chtml:
+	./doc_c/createchtmldoc.sh
+
+clean: 
+	rm -rf  doc_c/chtml doc_m/matlabhtml
Index: sm/trunk/doc/mainpage.dox
===================================================================
--- /issm/trunk/doc/mainpage.dox	(revision 10)
+++ 	(revision )
@@ -1,16 +1,0 @@
-/*! 
-*@mainpage ISSM Documentation
-* You can find several documentations of the Ice Sheet System Model (ISSM) code:
-*
-*\section user User Guide
-*- You can download a <a href="userguide.pdf"><b>pdf</b></a> documentation to get you started.
-*
-*\section theory Theory guide:
-*- You can download a theory guide <a href="theoryguide.pdf"><b>here</b></a> if you want to know more about the theory of ice sheet modeling and finite element.
-*
-*\section api Developer guide: 
-*You have also a documentation for the Matlab file <a href="developerguide/matlabhtml/index.html"><b>here</b></a>
-*
-*@authors Eric Larour, Helene Seroussi and Mathieu Morlighem.
-*/
-
Index: /issm/trunk/doc/website/Makefile
===================================================================
--- /issm/trunk/doc/website/Makefile	(revision 11)
+++ /issm/trunk/doc/website/Makefile	(revision 11)
@@ -0,0 +1,12 @@
+#Makefile for developper guide 
+
+all: matlabhtml chtml
+
+matlabhtml:
+	./doc_m/creatematlabhtmldoc.sh
+
+chtml:
+	./doc_c/createchtmldoc.sh
+
+clean: 
+	rm -rf  doc_c/chtml doc_m/matlabhtml
Index: /issm/trunk/doc/website/doc_c/createchtmldoc.sh
===================================================================
--- /issm/trunk/doc/website/doc_c/createchtmldoc.sh	(revision 11)
+++ /issm/trunk/doc/website/doc_c/createchtmldoc.sh	(revision 11)
@@ -0,0 +1,23 @@
+#!/bin/bash
+
+#remove previous doc
+rm -rf chtml
+
+#Go to root directory, because doxygen seems to have a problem running otherwise.
+cd $ISSM_DIR
+
+#Symlink the doxygen configuration file to root dir.
+ln -s "$ISSM_DIR/doc/website/doc_c/doxygen.config" ./doxygen.config
+ln -s "$ISSM_DIR/doc/website/doc_c/doxygenissm.css" ./doxygenissm.css
+ln -s "$ISSM_DIR/doc/website/doc_c/layoutissm.xml" ./layoutissm.xml
+ln -s "$ISSM_DIR/doc/website/doc_c/headerissm.html" ./headerissm.html
+ln -s "$ISSM_DIR/doc/website/doc_c/footerissm.html" ./footerissm.html
+
+#Run doxygen
+doxygen doxygen.config
+
+#Erase symlink
+rm doxygen.config doxygenissm.css layoutissm.xml headerissm.html footerissm.html
+
+#Use ISSM tabs
+cd $ISSM_DIR/doc/website/doc_c/
Index: /issm/trunk/doc/website/doc_c/doxygen.config
===================================================================
--- /issm/trunk/doc/website/doc_c/doxygen.config	(revision 11)
+++ /issm/trunk/doc/website/doc_c/doxygen.config	(revision 11)
@@ -0,0 +1,1510 @@
+# Doxyfile 1.5.8
+
+# This file describes the settings to be used by the documentation system
+# doxygen (www.doxygen.org) for a project
+#
+# All text after a hash (#) is considered a comment and will be ignored
+# The format is:
+#       TAG = value [value, ...]
+# For lists items can also be appended using:
+#       TAG += value [value, ...]
+# Values that contain spaces should be placed between quotes (" ")
+
+#---------------------------------------------------------------------------
+# Project related configuration options
+#---------------------------------------------------------------------------
+
+# This tag specifies the encoding used for all characters in the config file 
+# that follow. The default is UTF-8 which is also the encoding used for all 
+# text before the first occurrence of this tag. Doxygen uses libiconv (or the 
+# iconv built into libc) for the transcoding. See 
+# http://www.gnu.org/software/libiconv for the list of possible encodings.
+
+DOXYFILE_ENCODING      = UTF-8
+
+# The PROJECT_NAME tag is a single word (or a sequence of words surrounded 
+# by quotes) that should identify the project.
+
+PROJECT_NAME           =  "ISSM"
+
+# The PROJECT_NUMBER tag can be used to enter a project or revision number. 
+# This could be handy for archiving the generated documentation or 
+# if some version control system is used.
+
+PROJECT_NUMBER         = "1.0"
+
+# The OUTPUT_DIRECTORY tag is used to specify the (relative or absolute) 
+# base path where the generated documentation will be put. 
+# If a relative path is entered, it will be relative to the location 
+# where doxygen was started. If left blank the current directory will be used.
+
+OUTPUT_DIRECTORY       =  doc/website/doc_c
+
+# If the CREATE_SUBDIRS tag is set to YES, then doxygen will create 
+# 4096 sub-directories (in 2 levels) under the output directory of each output 
+# format and will distribute the generated files over these directories. 
+# Enabling this option can be useful when feeding doxygen a huge amount of 
+# source files, where putting all generated files in the same directory would 
+# otherwise cause performance problems for the file system.
+
+CREATE_SUBDIRS         = NO
+
+# The OUTPUT_LANGUAGE tag is used to specify the language in which all 
+# documentation generated by doxygen is written. Doxygen will use this 
+# information to generate all constant output in the proper language. 
+# The default language is English, other supported languages are: 
+# Afrikaans, Arabic, Brazilian, Catalan, Chinese, Chinese-Traditional, 
+# Croatian, Czech, Danish, Dutch, Farsi, Finnish, French, German, Greek, 
+# Hungarian, Italian, Japanese, Japanese-en (Japanese with English messages), 
+# Korean, Korean-en, Lithuanian, Norwegian, Macedonian, Persian, Polish, 
+# Portuguese, Romanian, Russian, Serbian, Serbian-Cyrilic, Slovak, Slovene, 
+# Spanish, Swedish, and Ukrainian.
+
+OUTPUT_LANGUAGE        = English
+
+# If the BRIEF_MEMBER_DESC tag is set to YES (the default) Doxygen will 
+# include brief member descriptions after the members that are listed in 
+# the file and class documentation (similar to JavaDoc). 
+# Set to NO to disable this.
+
+BRIEF_MEMBER_DESC      = YES
+
+# If the REPEAT_BRIEF tag is set to YES (the default) Doxygen will prepend 
+# the brief description of a member or function before the detailed description. 
+# Note: if both HIDE_UNDOC_MEMBERS and BRIEF_MEMBER_DESC are set to NO, the 
+# brief descriptions will be completely suppressed.
+
+REPEAT_BRIEF           = YES
+
+# This tag implements a quasi-intelligent brief description abbreviator 
+# that is used to form the text in various listings. Each string 
+# in this list, if found as the leading text of the brief description, will be 
+# stripped from the text and the result after processing the whole list, is 
+# used as the annotated text. Otherwise, the brief description is used as-is. 
+# If left blank, the following values are used ("$name" is automatically 
+# replaced with the name of the entity): "The $name class" "The $name widget" 
+# "The $name file" "is" "provides" "specifies" "contains" 
+# "represents" "a" "an" "the"
+
+ABBREVIATE_BRIEF       = 
+
+# If the ALWAYS_DETAILED_SEC and REPEAT_BRIEF tags are both set to YES then 
+# Doxygen will generate a detailed section even if there is only a brief 
+# description.
+
+ALWAYS_DETAILED_SEC    = NO
+
+# If the INLINE_INHERITED_MEMB tag is set to YES, doxygen will show all 
+# inherited members of a class in the documentation of that class as if those 
+# members were ordinary class members. Constructors, destructors and assignment 
+# operators of the base classes will not be shown.
+
+INLINE_INHERITED_MEMB  = NO
+
+# If the FULL_PATH_NAMES tag is set to YES then Doxygen will prepend the full 
+# path before files name in the file list and in the header files. If set 
+# to NO the shortest path that makes the file name unique will be used.
+
+FULL_PATH_NAMES        = YES
+
+# If the FULL_PATH_NAMES tag is set to YES then the STRIP_FROM_PATH tag 
+# can be used to strip a user-defined part of the path. Stripping is 
+# only done if one of the specified strings matches the left-hand part of 
+# the path. The tag can be used to show relative paths in the file list. 
+# If left blank the directory from which doxygen is run is used as the 
+# path to strip.
+
+STRIP_FROM_PATH        = 
+
+# The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of 
+# the path mentioned in the documentation of a class, which tells 
+# the reader which header file to include in order to use a class. 
+# If left blank only the name of the header file containing the class 
+# definition is used. Otherwise one should specify the include paths that 
+# are normally passed to the compiler using the -I flag.
+
+STRIP_FROM_INC_PATH    = 
+
+# If the SHORT_NAMES tag is set to YES, doxygen will generate much shorter 
+# (but less readable) file names. This can be useful is your file systems 
+# doesn't support long names like on DOS, Mac, or CD-ROM.
+
+SHORT_NAMES            = NO
+
+# If the JAVADOC_AUTOBRIEF tag is set to YES then Doxygen 
+# will interpret the first line (until the first dot) of a JavaDoc-style 
+# comment as the brief description. If set to NO, the JavaDoc 
+# comments will behave just like regular Qt-style comments 
+# (thus requiring an explicit @brief command for a brief description.)
+
+JAVADOC_AUTOBRIEF      = YES
+
+# If the QT_AUTOBRIEF tag is set to YES then Doxygen will 
+# interpret the first line (until the first dot) of a Qt-style 
+# comment as the brief description. If set to NO, the comments 
+# will behave just like regular Qt-style comments (thus requiring 
+# an explicit \brief command for a brief description.)
+
+QT_AUTOBRIEF           = NO
+
+# The MULTILINE_CPP_IS_BRIEF tag can be set to YES to make Doxygen 
+# treat a multi-line C++ special comment block (i.e. a block of //! or /// 
+# comments) as a brief description. This used to be the default behaviour. 
+# The new default is to treat a multi-line C++ comment block as a detailed 
+# description. Set this tag to YES if you prefer the old behaviour instead.
+
+MULTILINE_CPP_IS_BRIEF = NO
+
+# If the INHERIT_DOCS tag is set to YES (the default) then an undocumented 
+# member inherits the documentation from any documented member that it 
+# re-implements.
+
+INHERIT_DOCS           = YES
+
+# If the SEPARATE_MEMBER_PAGES tag is set to YES, then doxygen will produce 
+# a new page for each member. If set to NO, the documentation of a member will 
+# be part of the file/class/namespace that contains it.
+
+SEPARATE_MEMBER_PAGES  = NO
+
+# The TAB_SIZE tag can be used to set the number of spaces in a tab. 
+# Doxygen uses this value to replace tabs by spaces in code fragments.
+
+TAB_SIZE               = 8
+
+# This tag can be used to specify a number of aliases that acts 
+# as commands in the documentation. An alias has the form "name=value". 
+# For example adding "sideeffect=\par Side Effects:\n" will allow you to 
+# put the command \sideeffect (or @sideeffect) in the documentation, which 
+# will result in a user-defined paragraph with heading "Side Effects:". 
+# You can put \n's in the value part of an alias to insert newlines.
+
+ALIASES                = 
+
+# Set the OPTIMIZE_OUTPUT_FOR_C tag to YES if your project consists of C 
+# sources only. Doxygen will then generate output that is more tailored for C. 
+# For instance, some of the names that are used will be different. The list 
+# of all members will be omitted, etc.
+
+OPTIMIZE_OUTPUT_FOR_C  = YES
+
+# Set the OPTIMIZE_OUTPUT_JAVA tag to YES if your project consists of Java 
+# sources only. Doxygen will then generate output that is more tailored for 
+# Java. For instance, namespaces will be presented as packages, qualified 
+# scopes will look different, etc.
+
+OPTIMIZE_OUTPUT_JAVA   = NO
+
+# Set the OPTIMIZE_FOR_FORTRAN tag to YES if your project consists of Fortran 
+# sources only. Doxygen will then generate output that is more tailored for 
+# Fortran.
+
+OPTIMIZE_FOR_FORTRAN   = NO
+
+# Set the OPTIMIZE_OUTPUT_VHDL tag to YES if your project consists of VHDL 
+# sources. Doxygen will then generate output that is tailored for 
+# VHDL.
+
+OPTIMIZE_OUTPUT_VHDL   = NO
+
+# Doxygen selects the parser to use depending on the extension of the files it parses. 
+# With this tag you can assign which parser to use for a given extension. 
+# Doxygen has a built-in mapping, but you can override or extend it using this tag. 
+# The format is ext=language, where ext is a file extension, and language is one of 
+# the parsers supported by doxygen: IDL, Java, Javascript, C#, C, C++, D, PHP, 
+# Objective-C, Python, Fortran, VHDL, C, C++. For instance to make doxygen treat 
+# .inc files as Fortran files (default is PHP), and .f files as C (default is Fortran), 
+# use: inc=Fortran f=C
+
+EXTENSION_MAPPING      = 
+
+# If you use STL classes (i.e. std::string, std::vector, etc.) but do not want 
+# to include (a tag file for) the STL sources as input, then you should 
+# set this tag to YES in order to let doxygen match functions declarations and 
+# definitions whose arguments contain STL classes (e.g. func(std::string); v.s. 
+# func(std::string) {}). This also make the inheritance and collaboration 
+# diagrams that involve STL classes more complete and accurate.
+
+BUILTIN_STL_SUPPORT    = NO
+
+# If you use Microsoft's C++/CLI language, you should set this option to YES to 
+# enable parsing support.
+
+CPP_CLI_SUPPORT        = NO
+
+# Set the SIP_SUPPORT tag to YES if your project consists of sip sources only. 
+# Doxygen will parse them like normal C++ but will assume all classes use public 
+# instead of private inheritance when no explicit protection keyword is present.
+
+SIP_SUPPORT            = NO
+
+# For Microsoft's IDL there are propget and propput attributes to indicate getter 
+# and setter methods for a property. Setting this option to YES (the default) 
+# will make doxygen to replace the get and set methods by a property in the 
+# documentation. This will only work if the methods are indeed getting or 
+# setting a simple type. If this is not the case, or you want to show the 
+# methods anyway, you should set this option to NO.
+
+IDL_PROPERTY_SUPPORT   = YES
+
+# If member grouping is used in the documentation and the DISTRIBUTE_GROUP_DOC 
+# tag is set to YES, then doxygen will reuse the documentation of the first 
+# member in the group (if any) for the other members of the group. By default 
+# all members of a group must be documented explicitly.
+
+DISTRIBUTE_GROUP_DOC   = NO
+
+# Set the SUBGROUPING tag to YES (the default) to allow class member groups of 
+# the same type (for instance a group of public functions) to be put as a 
+# subgroup of that type (e.g. under the Public Functions section). Set it to 
+# NO to prevent subgrouping. Alternatively, this can be done per class using 
+# the \nosubgrouping command.
+
+SUBGROUPING            = YES
+
+# When TYPEDEF_HIDES_STRUCT is enabled, a typedef of a struct, union, or enum 
+# is documented as struct, union, or enum with the name of the typedef. So 
+# typedef struct TypeS {} TypeT, will appear in the documentation as a struct 
+# with name TypeT. When disabled the typedef will appear as a member of a file, 
+# namespace, or class. And the struct will be named TypeS. This can typically 
+# be useful for C code in case the coding convention dictates that all compound 
+# types are typedef'ed and only the typedef is referenced, never the tag name.
+
+TYPEDEF_HIDES_STRUCT   = NO
+
+# The SYMBOL_CACHE_SIZE determines the size of the internal cache use to 
+# determine which symbols to keep in memory and which to flush to disk. 
+# When the cache is full, less often used symbols will be written to disk. 
+# For small to medium size projects (<1000 input files) the default value is 
+# probably good enough. For larger projects a too small cache size can cause 
+# doxygen to be busy swapping symbols to and from disk most of the time 
+# causing a significant performance penality. 
+# If the system has enough physical memory increasing the cache will improve the 
+# performance by keeping more symbols in memory. Note that the value works on 
+# a logarithmic scale so increasing the size by one will rougly double the 
+# memory usage. The cache size is given by this formula: 
+# 2^(16+SYMBOL_CACHE_SIZE). The valid range is 0..9, the default is 0, 
+# corresponding to a cache size of 2^16 = 65536 symbols
+
+SYMBOL_CACHE_SIZE      = 0
+
+#---------------------------------------------------------------------------
+# Build related configuration options
+#---------------------------------------------------------------------------
+
+# If the EXTRACT_ALL tag is set to YES doxygen will assume all entities in 
+# documentation are documented, even if no documentation was available. 
+# Private class members and static file members will be hidden unless 
+# the EXTRACT_PRIVATE and EXTRACT_STATIC tags are set to YES
+
+EXTRACT_ALL            = YES
+
+# If the EXTRACT_PRIVATE tag is set to YES all private members of a class 
+# will be included in the documentation.
+
+EXTRACT_PRIVATE        = YES
+
+# If the EXTRACT_STATIC tag is set to YES all static members of a file 
+# will be included in the documentation.
+
+EXTRACT_STATIC         = YES
+
+# If the EXTRACT_LOCAL_CLASSES tag is set to YES classes (and structs) 
+# defined locally in source files will be included in the documentation. 
+# If set to NO only classes defined in header files are included.
+
+EXTRACT_LOCAL_CLASSES  = YES
+
+# This flag is only useful for Objective-C code. When set to YES local 
+# methods, which are defined in the implementation section but not in 
+# the interface are included in the documentation. 
+# If set to NO (the default) only methods in the interface are included.
+
+EXTRACT_LOCAL_METHODS  = NO
+
+# If this flag is set to YES, the members of anonymous namespaces will be 
+# extracted and appear in the documentation as a namespace called 
+# 'anonymous_namespace{file}', where file will be replaced with the base 
+# name of the file that contains the anonymous namespace. By default 
+# anonymous namespace are hidden.
+
+EXTRACT_ANON_NSPACES   = NO
+
+# If the HIDE_UNDOC_MEMBERS tag is set to YES, Doxygen will hide all 
+# undocumented members of documented classes, files or namespaces. 
+# If set to NO (the default) these members will be included in the 
+# various overviews, but no documentation section is generated. 
+# This option has no effect if EXTRACT_ALL is enabled.
+
+HIDE_UNDOC_MEMBERS     = NO
+
+# If the HIDE_UNDOC_CLASSES tag is set to YES, Doxygen will hide all 
+# undocumented classes that are normally visible in the class hierarchy. 
+# If set to NO (the default) these classes will be included in the various 
+# overviews. This option has no effect if EXTRACT_ALL is enabled.
+
+HIDE_UNDOC_CLASSES     = NO
+
+# If the HIDE_FRIEND_COMPOUNDS tag is set to YES, Doxygen will hide all 
+# friend (class|struct|union) declarations. 
+# If set to NO (the default) these declarations will be included in the 
+# documentation.
+
+HIDE_FRIEND_COMPOUNDS  = NO
+
+# If the HIDE_IN_BODY_DOCS tag is set to YES, Doxygen will hide any 
+# documentation blocks found inside the body of a function. 
+# If set to NO (the default) these blocks will be appended to the 
+# function's detailed documentation block.
+
+HIDE_IN_BODY_DOCS      = NO
+
+# The INTERNAL_DOCS tag determines if documentation 
+# that is typed after a \internal command is included. If the tag is set 
+# to NO (the default) then the documentation will be excluded. 
+# Set it to YES to include the internal documentation.
+
+INTERNAL_DOCS          = NO
+
+# If the CASE_SENSE_NAMES tag is set to NO then Doxygen will only generate 
+# file names in lower-case letters. If set to YES upper-case letters are also 
+# allowed. This is useful if you have classes or files whose names only differ 
+# in case and if your file system supports case sensitive file names. Windows 
+# and Mac users are advised to set this option to NO.
+
+CASE_SENSE_NAMES       = YES
+
+# If the HIDE_SCOPE_NAMES tag is set to NO (the default) then Doxygen 
+# will show members with their full class and namespace scopes in the 
+# documentation. If set to YES the scope will be hidden.
+
+HIDE_SCOPE_NAMES       = NO
+
+# If the SHOW_INCLUDE_FILES tag is set to YES (the default) then Doxygen 
+# will put a list of the files that are included by a file in the documentation 
+# of that file.
+
+SHOW_INCLUDE_FILES     = YES
+
+# If the INLINE_INFO tag is set to YES (the default) then a tag [inline] 
+# is inserted in the documentation for inline members.
+
+INLINE_INFO            = YES
+
+# If the SORT_MEMBER_DOCS tag is set to YES (the default) then doxygen 
+# will sort the (detailed) documentation of file and class members 
+# alphabetically by member name. If set to NO the members will appear in 
+# declaration order.
+
+SORT_MEMBER_DOCS       = YES
+
+# If the SORT_BRIEF_DOCS tag is set to YES then doxygen will sort the 
+# brief documentation of file, namespace and class members alphabetically 
+# by member name. If set to NO (the default) the members will appear in 
+# declaration order.
+
+SORT_BRIEF_DOCS        = NO
+
+# If the SORT_GROUP_NAMES tag is set to YES then doxygen will sort the 
+# hierarchy of group names into alphabetical order. If set to NO (the default) 
+# the group names will appear in their defined order.
+
+SORT_GROUP_NAMES       = NO
+
+# If the SORT_BY_SCOPE_NAME tag is set to YES, the class list will be 
+# sorted by fully-qualified names, including namespaces. If set to 
+# NO (the default), the class list will be sorted only by class name, 
+# not including the namespace part. 
+# Note: This option is not very useful if HIDE_SCOPE_NAMES is set to YES. 
+# Note: This option applies only to the class list, not to the 
+# alphabetical list.
+
+SORT_BY_SCOPE_NAME     = NO
+
+# The GENERATE_TODOLIST tag can be used to enable (YES) or 
+# disable (NO) the todo list. This list is created by putting \todo 
+# commands in the documentation.
+
+GENERATE_TODOLIST      = YES
+
+# The GENERATE_TESTLIST tag can be used to enable (YES) or 
+# disable (NO) the test list. This list is created by putting \test 
+# commands in the documentation.
+
+GENERATE_TESTLIST      = YES
+
+# The GENERATE_BUGLIST tag can be used to enable (YES) or 
+# disable (NO) the bug list. This list is created by putting \bug 
+# commands in the documentation.
+
+GENERATE_BUGLIST       = YES
+
+# The GENERATE_DEPRECATEDLIST tag can be used to enable (YES) or 
+# disable (NO) the deprecated list. This list is created by putting 
+# \deprecated commands in the documentation.
+
+GENERATE_DEPRECATEDLIST= YES
+
+# The ENABLED_SECTIONS tag can be used to enable conditional 
+# documentation sections, marked by \if sectionname ... \endif.
+
+ENABLED_SECTIONS       = 
+
+# The MAX_INITIALIZER_LINES tag determines the maximum number of lines 
+# the initial value of a variable or define consists of for it to appear in 
+# the documentation. If the initializer consists of more lines than specified 
+# here it will be hidden. Use a value of 0 to hide initializers completely. 
+# The appearance of the initializer of individual variables and defines in the 
+# documentation can be controlled using \showinitializer or \hideinitializer 
+# command in the documentation regardless of this setting.
+
+MAX_INITIALIZER_LINES  = 30
+
+# Set the SHOW_USED_FILES tag to NO to disable the list of files generated 
+# at the bottom of the documentation of classes and structs. If set to YES the 
+# list will mention the files that were used to generate the documentation.
+
+SHOW_USED_FILES        = YES
+
+# If the sources in your project are distributed over multiple directories 
+# then setting the SHOW_DIRECTORIES tag to YES will show the directory hierarchy 
+# in the documentation. The default is NO.
+
+SHOW_DIRECTORIES       = YES
+
+# Set the SHOW_FILES tag to NO to disable the generation of the Files page. 
+# This will remove the Files entry from the Quick Index and from the 
+# Folder Tree View (if specified). The default is YES.
+
+SHOW_FILES             = YES
+
+# Set the SHOW_NAMESPACES tag to NO to disable the generation of the 
+# Namespaces page. 
+# This will remove the Namespaces entry from the Quick Index 
+# and from the Folder Tree View (if specified). The default is YES.
+
+SHOW_NAMESPACES        = YES
+
+# The FILE_VERSION_FILTER tag can be used to specify a program or script that 
+# doxygen should invoke to get the current version for each file (typically from 
+# the version control system). Doxygen will invoke the program by executing (via 
+# popen()) the command <command> <input-file>, where <command> is the value of 
+# the FILE_VERSION_FILTER tag, and <input-file> is the name of an input file 
+# provided by doxygen. Whatever the program writes to standard output 
+# is used as the file version. See the manual for examples.
+
+FILE_VERSION_FILTER    = 
+
+# The LAYOUT_FILE tag can be used to specify a layout file which will be parsed by 
+# doxygen. The layout file controls the global structure of the generated output files 
+# in an output format independent way. The create the layout file that represents 
+# doxygen's defaults, run doxygen with the -l option. You can optionally specify a 
+# file name after the option, if omitted DoxygenLayout.xml will be used as the name 
+# of the layout file.
+
+LAYOUT_FILE            = layoutissm.xml
+
+#---------------------------------------------------------------------------
+# configuration options related to warning and progress messages
+#---------------------------------------------------------------------------
+
+# The QUIET tag can be used to turn on/off the messages that are generated 
+# by doxygen. Possible values are YES and NO. If left blank NO is used.
+
+QUIET                  = NO
+
+# The WARNINGS tag can be used to turn on/off the warning messages that are 
+# generated by doxygen. Possible values are YES and NO. If left blank 
+# NO is used.
+
+WARNINGS               = YES
+
+# If WARN_IF_UNDOCUMENTED is set to YES, then doxygen will generate warnings 
+# for undocumented members. If EXTRACT_ALL is set to YES then this flag will 
+# automatically be disabled.
+
+WARN_IF_UNDOCUMENTED   = YES
+
+# If WARN_IF_DOC_ERROR is set to YES, doxygen will generate warnings for 
+# potential errors in the documentation, such as not documenting some 
+# parameters in a documented function, or documenting parameters that 
+# don't exist or using markup commands wrongly.
+
+WARN_IF_DOC_ERROR      = YES
+
+# This WARN_NO_PARAMDOC option can be abled to get warnings for 
+# functions that are documented, but have no documentation for their parameters 
+# or return value. If set to NO (the default) doxygen will only warn about 
+# wrong or incomplete parameter documentation, but not about the absence of 
+# documentation.
+
+WARN_NO_PARAMDOC       = NO
+
+# The WARN_FORMAT tag determines the format of the warning messages that 
+# doxygen can produce. The string should contain the $file, $line, and $text 
+# tags, which will be replaced by the file and line number from which the 
+# warning originated and the warning text. Optionally the format may contain 
+# $version, which will be replaced by the version of the file (if it could 
+# be obtained via FILE_VERSION_FILTER)
+
+WARN_FORMAT            = "$file:$line: $text"
+
+# The WARN_LOGFILE tag can be used to specify a file to which warning 
+# and error messages should be written. If left blank the output is written 
+# to stderr.
+
+WARN_LOGFILE           = 
+
+#---------------------------------------------------------------------------
+# configuration options related to the input files
+#---------------------------------------------------------------------------
+
+# The INPUT tag can be used to specify the files and/or directories that contain 
+# documented source files. You may enter file names like "myfile.cpp" or 
+# directories like "/usr/src/myproject". Separate the files or directories 
+# with spaces.
+
+INPUT                  =  ./
+
+# This tag can be used to specify the character encoding of the source files 
+# that doxygen parses. Internally doxygen uses the UTF-8 encoding, which is 
+# also the default input encoding. Doxygen uses libiconv (or the iconv built 
+# into libc) for the transcoding. See http://www.gnu.org/software/libiconv for 
+# the list of possible encodings.
+
+INPUT_ENCODING         = UTF-8
+
+# If the value of the INPUT tag contains directories, you can use the 
+# FILE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp 
+# and *.h) to filter out the source-files in the directories. If left 
+# blank the following patterns are tested: 
+# *.c *.cc *.cxx *.cpp *.c++ *.java *.ii *.ixx *.ipp *.i++ *.inl *.h *.hh *.hxx 
+# *.hpp *.h++ *.idl *.odl *.cs *.php *.php3 *.inc *.m *.mm *.py *.f90
+
+FILE_PATTERNS          =  *.c *.dox *.h
+
+# The RECURSIVE tag can be used to turn specify whether or not subdirectories 
+# should be searched for input files as well. Possible values are YES and NO. 
+# If left blank NO is used.
+
+RECURSIVE              = YES
+
+# The EXCLUDE tag can be used to specify files and/or directories that should 
+# excluded from the INPUT source files. This way you can easily exclude a 
+# subdirectory from a directory tree whose root is specified with the INPUT tag.
+
+EXCLUDE                = 
+
+# The EXCLUDE_SYMLINKS tag can be used select whether or not files or 
+# directories that are symbolic links (a Unix filesystem feature) are excluded 
+# from the input.
+
+EXCLUDE_SYMLINKS       = NO
+
+# If the value of the INPUT tag contains directories, you can use the 
+# EXCLUDE_PATTERNS tag to specify one or more wildcard patterns to exclude 
+# certain files from those directories. Note that the wildcards are matched 
+# against the file with absolute path, so to exclude all test directories 
+# for example use the pattern */test/*
+
+EXCLUDE_PATTERNS       = */packages/* */tests/* */examples/*
+
+# The EXCLUDE_SYMBOLS tag can be used to specify one or more symbol names 
+# (namespaces, classes, functions, etc.) that should be excluded from the 
+# output. The symbol name can be a fully qualified name, a word, or if the 
+# wildcard * is used, a substring. Examples: ANamespace, AClass, 
+# AClass::ANamespace, ANamespace::*Test
+
+EXCLUDE_SYMBOLS        = 
+
+# The EXAMPLE_PATH tag can be used to specify one or more files or 
+# directories that contain example code fragments that are included (see 
+# the \include command).
+
+EXAMPLE_PATH           = 
+
+# If the value of the EXAMPLE_PATH tag contains directories, you can use the 
+# EXAMPLE_PATTERNS tag to specify one or more wildcard pattern (like *.cpp 
+# and *.h) to filter out the source-files in the directories. If left 
+# blank all files are included.
+
+EXAMPLE_PATTERNS       = 
+
+# If the EXAMPLE_RECURSIVE tag is set to YES then subdirectories will be 
+# searched for input files to be used with the \include or \dontinclude 
+# commands irrespective of the value of the RECURSIVE tag. 
+# Possible values are YES and NO. If left blank NO is used.
+
+EXAMPLE_RECURSIVE      = NO
+
+# The IMAGE_PATH tag can be used to specify one or more files or 
+# directories that contain image that are included in the documentation (see 
+# the \image command).
+
+IMAGE_PATH             = 
+
+# The INPUT_FILTER tag can be used to specify a program that doxygen should 
+# invoke to filter for each input file. Doxygen will invoke the filter program 
+# by executing (via popen()) the command <filter> <input-file>, where <filter> 
+# is the value of the INPUT_FILTER tag, and <input-file> is the name of an 
+# input file. Doxygen will then use the output that the filter program writes 
+# to standard output. 
+# If FILTER_PATTERNS is specified, this tag will be 
+# ignored.
+
+INPUT_FILTER           = 
+
+# The FILTER_PATTERNS tag can be used to specify filters on a per file pattern 
+# basis. 
+# Doxygen will compare the file name with each pattern and apply the 
+# filter if there is a match. 
+# The filters are a list of the form: 
+# pattern=filter (like *.cpp=my_cpp_filter). See INPUT_FILTER for further 
+# info on how filters are used. If FILTER_PATTERNS is empty, INPUT_FILTER 
+# is applied to all files.
+
+FILTER_PATTERNS        =
+
+# If the FILTER_SOURCE_FILES tag is set to YES, the input filter (if set using 
+# INPUT_FILTER) will be used to filter the input files when producing source 
+# files to browse (i.e. when SOURCE_BROWSER is set to YES).
+
+FILTER_SOURCE_FILES    = NO
+
+#---------------------------------------------------------------------------
+# configuration options related to source browsing
+#---------------------------------------------------------------------------
+
+# If the SOURCE_BROWSER tag is set to YES then a list of source files will 
+# be generated. Documented entities will be cross-referenced with these sources. 
+# Note: To get rid of all source code in the generated output, make sure also 
+# VERBATIM_HEADERS is set to NO.
+
+SOURCE_BROWSER         = NO
+
+# Setting the INLINE_SOURCES tag to YES will include the body 
+# of functions and classes directly in the documentation.
+
+INLINE_SOURCES         = NO
+
+# Setting the STRIP_CODE_COMMENTS tag to YES (the default) will instruct 
+# doxygen to hide any special comment blocks from generated source code 
+# fragments. Normal C and C++ comments will always remain visible.
+
+STRIP_CODE_COMMENTS    = YES
+
+# If the REFERENCED_BY_RELATION tag is set to YES 
+# then for each documented function all documented 
+# functions referencing it will be listed.
+
+REFERENCED_BY_RELATION = NO
+
+# If the REFERENCES_RELATION tag is set to YES 
+# then for each documented function all documented entities 
+# called/used by that function will be listed.
+
+REFERENCES_RELATION    = NO
+
+# If the REFERENCES_LINK_SOURCE tag is set to YES (the default) 
+# and SOURCE_BROWSER tag is set to YES, then the hyperlinks from 
+# functions in REFERENCES_RELATION and REFERENCED_BY_RELATION lists will 
+# link to the source code. 
+# Otherwise they will link to the documentation.
+
+REFERENCES_LINK_SOURCE = YES
+
+# If the USE_HTAGS tag is set to YES then the references to source code 
+# will point to the HTML generated by the htags(1) tool instead of doxygen 
+# built-in source browser. The htags tool is part of GNU's global source 
+# tagging system (see http://www.gnu.org/software/global/global.html). You 
+# will need version 4.8.6 or higher.
+
+USE_HTAGS              = NO
+
+# If the VERBATIM_HEADERS tag is set to YES (the default) then Doxygen 
+# will generate a verbatim copy of the header file for each class for 
+# which an include is specified. Set to NO to disable this.
+
+VERBATIM_HEADERS       = YES
+
+#---------------------------------------------------------------------------
+# configuration options related to the alphabetical class index
+#---------------------------------------------------------------------------
+
+# If the ALPHABETICAL_INDEX tag is set to YES, an alphabetical index 
+# of all compounds will be generated. Enable this if the project 
+# contains a lot of classes, structs, unions or interfaces.
+
+ALPHABETICAL_INDEX     = NO
+
+# If the alphabetical index is enabled (see ALPHABETICAL_INDEX) then 
+# the COLS_IN_ALPHA_INDEX tag can be used to specify the number of columns 
+# in which this list will be split (can be a number in the range [1..20])
+
+COLS_IN_ALPHA_INDEX    = 5
+
+# In case all classes in a project start with a common prefix, all 
+# classes will be put under the same header in the alphabetical index. 
+# The IGNORE_PREFIX tag can be used to specify one or more prefixes that 
+# should be ignored while generating the index headers.
+
+IGNORE_PREFIX          = 
+
+#---------------------------------------------------------------------------
+# configuration options related to the HTML output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_HTML tag is set to YES (the default) Doxygen will 
+# generate HTML output.
+
+GENERATE_HTML          = YES
+
+# The HTML_OUTPUT tag is used to specify where the HTML docs will be put. 
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be 
+# put in front of it. If left blank `html' will be used as the default path.
+
+HTML_OUTPUT            = chtml
+
+# The HTML_FILE_EXTENSION tag can be used to specify the file extension for 
+# each generated HTML page (for example: .htm,.php,.asp). If it is left blank 
+# doxygen will generate files with .html extension.
+
+HTML_FILE_EXTENSION    = .html
+
+# The HTML_HEADER tag can be used to specify a personal HTML header for 
+# each generated HTML page. If it is left blank doxygen will generate a 
+# standard header.
+
+HTML_HEADER            = headerissm.html
+
+# The HTML_FOOTER tag can be used to specify a personal HTML footer for 
+# each generated HTML page. If it is left blank doxygen will generate a 
+# standard footer.
+
+HTML_FOOTER            = footerissm.html
+
+# The HTML_STYLESHEET tag can be used to specify a user-defined cascading 
+# style sheet that is used by each HTML page. It can be used to 
+# fine-tune the look of the HTML output. If the tag is left blank doxygen 
+# will generate a default style sheet. Note that doxygen will try to copy 
+# the style sheet file to the HTML output directory, so don't put your own 
+# stylesheet in the HTML output directory as well, or it will be erased!
+
+HTML_STYLESHEET        = doxygenissm.css
+
+# If the HTML_ALIGN_MEMBERS tag is set to YES, the members of classes, 
+# files or namespaces will be aligned in HTML using tables. If set to 
+# NO a bullet list will be used.
+
+HTML_ALIGN_MEMBERS     = YES
+
+# If the HTML_DYNAMIC_SECTIONS tag is set to YES then the generated HTML 
+# documentation will contain sections that can be hidden and shown after the 
+# page has loaded. For this to work a browser that supports 
+# JavaScript and DHTML is required (for instance Mozilla 1.0+, Firefox 
+# Netscape 6.0+, Internet explorer 5.0+, Konqueror, or Safari).
+
+HTML_DYNAMIC_SECTIONS  = NO
+
+# If the GENERATE_DOCSET tag is set to YES, additional index files 
+# will be generated that can be used as input for Apple's Xcode 3 
+# integrated development environment, introduced with OSX 10.5 (Leopard). 
+# To create a documentation set, doxygen will generate a Makefile in the 
+# HTML output directory. Running make will produce the docset in that 
+# directory and running "make install" will install the docset in 
+# ~/Library/Developer/Shared/Documentation/DocSets so that Xcode will find 
+# it at startup. 
+# See http://developer.apple.com/tools/creatingdocsetswithdoxygen.html for more information.
+
+GENERATE_DOCSET        = NO
+
+# When GENERATE_DOCSET tag is set to YES, this tag determines the name of the 
+# feed. A documentation feed provides an umbrella under which multiple 
+# documentation sets from a single provider (such as a company or product suite) 
+# can be grouped.
+
+DOCSET_FEEDNAME        = "Doxygen generated docs"
+
+# When GENERATE_DOCSET tag is set to YES, this tag specifies a string that 
+# should uniquely identify the documentation set bundle. This should be a 
+# reverse domain-name style string, e.g. com.mycompany.MyDocSet. Doxygen 
+# will append .docset to the name.
+
+DOCSET_BUNDLE_ID       = org.doxygen.Project
+
+# If the GENERATE_HTMLHELP tag is set to YES, additional index files 
+# will be generated that can be used as input for tools like the 
+# Microsoft HTML help workshop to generate a compiled HTML help file (.chm) 
+# of the generated HTML documentation.
+
+GENERATE_HTMLHELP      = NO
+
+# If the GENERATE_HTMLHELP tag is set to YES, the CHM_FILE tag can 
+# be used to specify the file name of the resulting .chm file. You 
+# can add a path in front of the file if the result should not be 
+# written to the html output directory.
+
+CHM_FILE               = 
+
+# If the GENERATE_HTMLHELP tag is set to YES, the HHC_LOCATION tag can 
+# be used to specify the location (absolute path including file name) of 
+# the HTML help compiler (hhc.exe). If non-empty doxygen will try to run 
+# the HTML help compiler on the generated index.hhp.
+
+HHC_LOCATION           = 
+
+# If the GENERATE_HTMLHELP tag is set to YES, the GENERATE_CHI flag 
+# controls if a separate .chi index file is generated (YES) or that 
+# it should be included in the master .chm file (NO).
+
+GENERATE_CHI           = NO
+
+# If the GENERATE_HTMLHELP tag is set to YES, the CHM_INDEX_ENCODING 
+# is used to encode HtmlHelp index (hhk), content (hhc) and project file 
+# content.
+
+CHM_INDEX_ENCODING     = 
+
+# If the GENERATE_HTMLHELP tag is set to YES, the BINARY_TOC flag 
+# controls whether a binary table of contents is generated (YES) or a 
+# normal table of contents (NO) in the .chm file.
+
+BINARY_TOC             = NO
+
+# The TOC_EXPAND flag can be set to YES to add extra items for group members 
+# to the contents of the HTML help documentation and to the tree view.
+
+TOC_EXPAND             = NO
+
+# If the GENERATE_QHP tag is set to YES and both QHP_NAMESPACE and QHP_VIRTUAL_FOLDER 
+# are set, an additional index file will be generated that can be used as input for 
+# Qt's qhelpgenerator to generate a Qt Compressed Help (.qch) of the generated 
+# HTML documentation.
+
+GENERATE_QHP           = NO
+
+# If the QHG_LOCATION tag is specified, the QCH_FILE tag can 
+# be used to specify the file name of the resulting .qch file. 
+# The path specified is relative to the HTML output folder.
+
+QCH_FILE               = 
+
+# The QHP_NAMESPACE tag specifies the namespace to use when generating 
+# Qt Help Project output. For more information please see 
+# http://doc.trolltech.com/qthelpproject.html#namespace
+
+QHP_NAMESPACE          = 
+
+# The QHP_VIRTUAL_FOLDER tag specifies the namespace to use when generating 
+# Qt Help Project output. For more information please see 
+# http://doc.trolltech.com/qthelpproject.html#virtual-folders
+
+QHP_VIRTUAL_FOLDER     = doc
+
+# If QHP_CUST_FILTER_NAME is set, it specifies the name of a custom filter to add. 
+# For more information please see 
+# http://doc.trolltech.com/qthelpproject.html#custom-filters
+
+QHP_CUST_FILTER_NAME   = 
+
+# The QHP_CUST_FILT_ATTRS tag specifies the list of the attributes of the custom filter to add.For more information please see 
+# <a href="http://doc.trolltech.com/qthelpproject.html#custom-filters">Qt Help Project / Custom Filters</a>.
+
+QHP_CUST_FILTER_ATTRS  = 
+
+# The QHP_SECT_FILTER_ATTRS tag specifies the list of the attributes this project's 
+# filter section matches. 
+# <a href="http://doc.trolltech.com/qthelpproject.html#filter-attributes">Qt Help Project / Filter Attributes</a>.
+
+QHP_SECT_FILTER_ATTRS  = 
+
+# If the GENERATE_QHP tag is set to YES, the QHG_LOCATION tag can 
+# be used to specify the location of Qt's qhelpgenerator. 
+# If non-empty doxygen will try to run qhelpgenerator on the generated 
+# .qhp file.
+
+QHG_LOCATION           = 
+
+# The DISABLE_INDEX tag can be used to turn on/off the condensed index at 
+# top of each HTML page. The value NO (the default) enables the index and 
+# the value YES disables it.
+
+DISABLE_INDEX          = NO
+
+# This tag can be used to set the number of enum values (range [1..20]) 
+# that doxygen will group on one line in the generated HTML documentation.
+
+ENUM_VALUES_PER_LINE   = 4
+
+# The GENERATE_TREEVIEW tag is used to specify whether a tree-like index 
+# structure should be generated to display hierarchical information. 
+# If the tag value is set to FRAME, a side panel will be generated 
+# containing a tree-like index structure (just like the one that 
+# is generated for HTML Help). For this to work a browser that supports 
+# JavaScript, DHTML, CSS and frames is required (for instance Mozilla 1.0+, 
+# Netscape 6.0+, Internet explorer 5.0+, or Konqueror). Windows users are 
+# probably better off using the HTML help feature. Other possible values 
+# for this tag are: HIERARCHIES, which will generate the Groups, Directories, 
+# and Class Hierarchy pages using a tree view instead of an ordered list; 
+# ALL, which combines the behavior of FRAME and HIERARCHIES; and NONE, which 
+# disables this behavior completely. For backwards compatibility with previous 
+# releases of Doxygen, the values YES and NO are equivalent to FRAME and NONE 
+# respectively.
+
+GENERATE_TREEVIEW      = NONE
+
+# If the treeview is enabled (see GENERATE_TREEVIEW) then this tag can be 
+# used to set the initial width (in pixels) of the frame in which the tree 
+# is shown.
+
+TREEVIEW_WIDTH         = 250
+
+# Use this tag to change the font size of Latex formulas included 
+# as images in the HTML documentation. The default is 10. Note that 
+# when you change the font size after a successful doxygen run you need 
+# to manually remove any form_*.png images from the HTML output directory 
+# to force them to be regenerated.
+
+FORMULA_FONTSIZE       = 10
+
+#---------------------------------------------------------------------------
+# configuration options related to the LaTeX output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_LATEX tag is set to YES (the default) Doxygen will 
+# generate Latex output.
+
+GENERATE_LATEX         = NO
+
+# The LATEX_OUTPUT tag is used to specify where the LaTeX docs will be put. 
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be 
+# put in front of it. If left blank `latex' will be used as the default path.
+
+LATEX_OUTPUT           = latex
+
+# The LATEX_CMD_NAME tag can be used to specify the LaTeX command name to be 
+# invoked. If left blank `latex' will be used as the default command name.
+
+LATEX_CMD_NAME         = latex
+
+# The MAKEINDEX_CMD_NAME tag can be used to specify the command name to 
+# generate index for LaTeX. If left blank `makeindex' will be used as the 
+# default command name.
+
+MAKEINDEX_CMD_NAME     = makeindex
+
+# If the COMPACT_LATEX tag is set to YES Doxygen generates more compact 
+# LaTeX documents. This may be useful for small projects and may help to 
+# save some trees in general.
+
+COMPACT_LATEX          = NO
+
+# The PAPER_TYPE tag can be used to set the paper type that is used 
+# by the printer. Possible values are: a4, a4wide, letter, legal and 
+# executive. If left blank a4wide will be used.
+
+PAPER_TYPE             = a4wide
+
+# The EXTRA_PACKAGES tag can be to specify one or more names of LaTeX 
+# packages that should be included in the LaTeX output.
+
+EXTRA_PACKAGES         = 
+
+# The LATEX_HEADER tag can be used to specify a personal LaTeX header for 
+# the generated latex document. The header should contain everything until 
+# the first chapter. If it is left blank doxygen will generate a 
+# standard header. Notice: only use this tag if you know what you are doing!
+
+LATEX_HEADER           = 
+
+# If the PDF_HYPERLINKS tag is set to YES, the LaTeX that is generated 
+# is prepared for conversion to pdf (using ps2pdf). The pdf file will 
+# contain links (just like the HTML output) instead of page references 
+# This makes the output suitable for online browsing using a pdf viewer.
+
+PDF_HYPERLINKS         = YES
+
+# If the USE_PDFLATEX tag is set to YES, pdflatex will be used instead of 
+# plain latex in the generated Makefile. Set this option to YES to get a 
+# higher quality PDF documentation.
+
+USE_PDFLATEX           = YES
+
+# If the LATEX_BATCHMODE tag is set to YES, doxygen will add the \\batchmode. 
+# command to the generated LaTeX files. This will instruct LaTeX to keep 
+# running if errors occur, instead of asking the user for help. 
+# This option is also used when generating formulas in HTML.
+
+LATEX_BATCHMODE        = NO
+
+# If LATEX_HIDE_INDICES is set to YES then doxygen will not 
+# include the index chapters (such as File Index, Compound Index, etc.) 
+# in the output.
+
+LATEX_HIDE_INDICES     = NO
+
+#---------------------------------------------------------------------------
+# configuration options related to the RTF output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_RTF tag is set to YES Doxygen will generate RTF output 
+# The RTF output is optimized for Word 97 and may not look very pretty with 
+# other RTF readers or editors.
+
+GENERATE_RTF           = NO
+
+# The RTF_OUTPUT tag is used to specify where the RTF docs will be put. 
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be 
+# put in front of it. If left blank `rtf' will be used as the default path.
+
+RTF_OUTPUT             = rtf
+
+# If the COMPACT_RTF tag is set to YES Doxygen generates more compact 
+# RTF documents. This may be useful for small projects and may help to 
+# save some trees in general.
+
+COMPACT_RTF            = NO
+
+# If the RTF_HYPERLINKS tag is set to YES, the RTF that is generated 
+# will contain hyperlink fields. The RTF file will 
+# contain links (just like the HTML output) instead of page references. 
+# This makes the output suitable for online browsing using WORD or other 
+# programs which support those fields. 
+# Note: wordpad (write) and others do not support links.
+
+RTF_HYPERLINKS         = NO
+
+# Load stylesheet definitions from file. Syntax is similar to doxygen's 
+# config file, i.e. a series of assignments. You only have to provide 
+# replacements, missing definitions are set to their default value.
+
+RTF_STYLESHEET_FILE    = 
+
+# Set optional variables used in the generation of an rtf document. 
+# Syntax is similar to doxygen's config file.
+
+RTF_EXTENSIONS_FILE    = 
+
+#---------------------------------------------------------------------------
+# configuration options related to the man page output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_MAN tag is set to YES (the default) Doxygen will 
+# generate man pages
+
+GENERATE_MAN           = NO
+
+# The MAN_OUTPUT tag is used to specify where the man pages will be put. 
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be 
+# put in front of it. If left blank `man' will be used as the default path.
+
+MAN_OUTPUT             = man
+
+# The MAN_EXTENSION tag determines the extension that is added to 
+# the generated man pages (default is the subroutine's section .3)
+
+MAN_EXTENSION          = .3
+
+# If the MAN_LINKS tag is set to YES and Doxygen generates man output, 
+# then it will generate one additional man file for each entity 
+# documented in the real man page(s). These additional files 
+# only source the real man page, but without them the man command 
+# would be unable to find the correct page. The default is NO.
+
+MAN_LINKS              = NO
+
+#---------------------------------------------------------------------------
+# configuration options related to the XML output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_XML tag is set to YES Doxygen will 
+# generate an XML file that captures the structure of 
+# the code including all documentation.
+
+GENERATE_XML           = NO
+
+# The XML_OUTPUT tag is used to specify where the XML pages will be put. 
+# If a relative path is entered the value of OUTPUT_DIRECTORY will be 
+# put in front of it. If left blank `xml' will be used as the default path.
+
+XML_OUTPUT             = xml
+
+# The XML_SCHEMA tag can be used to specify an XML schema, 
+# which can be used by a validating XML parser to check the 
+# syntax of the XML files.
+
+XML_SCHEMA             = 
+
+# The XML_DTD tag can be used to specify an XML DTD, 
+# which can be used by a validating XML parser to check the 
+# syntax of the XML files.
+
+XML_DTD                = 
+
+# If the XML_PROGRAMLISTING tag is set to YES Doxygen will 
+# dump the program listings (including syntax highlighting 
+# and cross-referencing information) to the XML output. Note that 
+# enabling this will significantly increase the size of the XML output.
+
+XML_PROGRAMLISTING     = YES
+
+#---------------------------------------------------------------------------
+# configuration options for the AutoGen Definitions output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_AUTOGEN_DEF tag is set to YES Doxygen will 
+# generate an AutoGen Definitions (see autogen.sf.net) file 
+# that captures the structure of the code including all 
+# documentation. Note that this feature is still experimental 
+# and incomplete at the moment.
+
+GENERATE_AUTOGEN_DEF   = NO
+
+#---------------------------------------------------------------------------
+# configuration options related to the Perl module output
+#---------------------------------------------------------------------------
+
+# If the GENERATE_PERLMOD tag is set to YES Doxygen will 
+# generate a Perl module file that captures the structure of 
+# the code including all documentation. Note that this 
+# feature is still experimental and incomplete at the 
+# moment.
+
+GENERATE_PERLMOD       = NO
+
+# If the PERLMOD_LATEX tag is set to YES Doxygen will generate 
+# the necessary Makefile rules, Perl scripts and LaTeX code to be able 
+# to generate PDF and DVI output from the Perl module output.
+
+PERLMOD_LATEX          = NO
+
+# If the PERLMOD_PRETTY tag is set to YES the Perl module output will be 
+# nicely formatted so it can be parsed by a human reader. 
+# This is useful 
+# if you want to understand what is going on. 
+# On the other hand, if this 
+# tag is set to NO the size of the Perl module output will be much smaller 
+# and Perl will parse it just the same.
+
+PERLMOD_PRETTY         = YES
+
+# The names of the make variables in the generated doxyrules.make file 
+# are prefixed with the string contained in PERLMOD_MAKEVAR_PREFIX. 
+# This is useful so different doxyrules.make files included by the same 
+# Makefile don't overwrite each other's variables.
+
+PERLMOD_MAKEVAR_PREFIX = 
+
+#---------------------------------------------------------------------------
+# Configuration options related to the preprocessor   
+#---------------------------------------------------------------------------
+
+# If the ENABLE_PREPROCESSING tag is set to YES (the default) Doxygen will 
+# evaluate all C-preprocessor directives found in the sources and include 
+# files.
+
+ENABLE_PREPROCESSING   = YES
+
+# If the MACRO_EXPANSION tag is set to YES Doxygen will expand all macro 
+# names in the source code. If set to NO (the default) only conditional 
+# compilation will be performed. Macro expansion can be done in a controlled 
+# way by setting EXPAND_ONLY_PREDEF to YES.
+
+MACRO_EXPANSION        = NO
+
+# If the EXPAND_ONLY_PREDEF and MACRO_EXPANSION tags are both set to YES 
+# then the macro expansion is limited to the macros specified with the 
+# PREDEFINED and EXPAND_AS_DEFINED tags.
+
+EXPAND_ONLY_PREDEF     = NO
+
+# If the SEARCH_INCLUDES tag is set to YES (the default) the includes files 
+# in the INCLUDE_PATH (see below) will be search if a #include is found.
+
+SEARCH_INCLUDES        = YES
+
+# The INCLUDE_PATH tag can be used to specify one or more directories that 
+# contain include files that are not input files but should be processed by 
+# the preprocessor.
+
+INCLUDE_PATH           = 
+
+# You can use the INCLUDE_FILE_PATTERNS tag to specify one or more wildcard 
+# patterns (like *.h and *.hpp) to filter out the header-files in the 
+# directories. If left blank, the patterns specified with FILE_PATTERNS will 
+# be used.
+
+INCLUDE_FILE_PATTERNS  = 
+
+# The PREDEFINED tag can be used to specify one or more macro names that 
+# are defined before the preprocessor is started (similar to the -D option of 
+# gcc). The argument of the tag is a list of macros of the form: name 
+# or name=definition (no spaces). If the definition and the = are 
+# omitted =1 is assumed. To prevent a macro definition from being 
+# undefined via #undef or recursively expanded use the := operator 
+# instead of the = operator.
+
+PREDEFINED             = 
+
+# If the MACRO_EXPANSION and EXPAND_ONLY_PREDEF tags are set to YES then 
+# this tag can be used to specify a list of macro names that should be expanded. 
+# The macro definition that is found in the sources will be used. 
+# Use the PREDEFINED tag if you want to use a different macro definition.
+
+EXPAND_AS_DEFINED      = 
+
+# If the SKIP_FUNCTION_MACROS tag is set to YES (the default) then 
+# doxygen's preprocessor will remove all function-like macros that are alone 
+# on a line, have an all uppercase name, and do not end with a semicolon. Such 
+# function macros are typically used for boiler-plate code, and will confuse 
+# the parser if not removed.
+
+SKIP_FUNCTION_MACROS   = YES
+
+#---------------------------------------------------------------------------
+# Configuration::additions related to external references   
+#---------------------------------------------------------------------------
+
+# The TAGFILES option can be used to specify one or more tagfiles. 
+# Optionally an initial location of the external documentation 
+# can be added for each tagfile. The format of a tag file without 
+# this location is as follows: 
+#  
+# TAGFILES = file1 file2 ... 
+# Adding location for the tag files is done as follows: 
+#  
+# TAGFILES = file1=loc1 "file2 = loc2" ... 
+# where "loc1" and "loc2" can be relative or absolute paths or 
+# URLs. If a location is present for each tag, the installdox tool 
+# does not have to be run to correct the links. 
+# Note that each tag file must have a unique name 
+# (where the name does NOT include the path) 
+# If a tag file is not located in the directory in which doxygen 
+# is run, you must also specify the path to the tagfile here.
+
+TAGFILES               = 
+
+# When a file name is specified after GENERATE_TAGFILE, doxygen will create 
+# a tag file that is based on the input files it reads.
+
+GENERATE_TAGFILE       = 
+
+# If the ALLEXTERNALS tag is set to YES all external classes will be listed 
+# in the class index. If set to NO only the inherited external classes 
+# will be listed.
+
+ALLEXTERNALS           = NO
+
+# If the EXTERNAL_GROUPS tag is set to YES all external groups will be listed 
+# in the modules index. If set to NO, only the current project's groups will 
+# be listed.
+
+EXTERNAL_GROUPS        = YES
+
+# The PERL_PATH should be the absolute path and name of the perl script 
+# interpreter (i.e. the result of `which perl').
+
+PERL_PATH              = /usr/bin/perl
+
+#---------------------------------------------------------------------------
+# Configuration options related to the dot tool   
+#---------------------------------------------------------------------------
+
+# If the CLASS_DIAGRAMS tag is set to YES (the default) Doxygen will 
+# generate a inheritance diagram (in HTML, RTF and LaTeX) for classes with base 
+# or super classes. Setting the tag to NO turns the diagrams off. Note that 
+# this option is superseded by the HAVE_DOT option below. This is only a 
+# fallback. It is recommended to install and use dot, since it yields more 
+# powerful graphs.
+
+CLASS_DIAGRAMS         = YES
+
+# You can define message sequence charts within doxygen comments using the \msc 
+# command. Doxygen will then run the mscgen tool (see 
+# http://www.mcternan.me.uk/mscgen/) to produce the chart and insert it in the 
+# documentation. The MSCGEN_PATH tag allows you to specify the directory where 
+# the mscgen tool resides. If left empty the tool is assumed to be found in the 
+# default search path.
+
+MSCGEN_PATH            = 
+
+# If set to YES, the inheritance and collaboration graphs will hide 
+# inheritance and usage relations if the target is undocumented 
+# or is not a class.
+
+HIDE_UNDOC_RELATIONS   = YES
+
+# If you set the HAVE_DOT tag to YES then doxygen will assume the dot tool is 
+# available from the path. This tool is part of Graphviz, a graph visualization 
+# toolkit from AT&T and Lucent Bell Labs. The other options in this section 
+# have no effect if this option is set to NO (the default)
+
+HAVE_DOT               = NO
+
+# By default doxygen will write a font called FreeSans.ttf to the output 
+# directory and reference it in all dot files that doxygen generates. This 
+# font does not include all possible unicode characters however, so when you need 
+# these (or just want a differently looking font) you can specify the font name 
+# using DOT_FONTNAME. You need need to make sure dot is able to find the font, 
+# which can be done by putting it in a standard location or by setting the 
+# DOTFONTPATH environment variable or by setting DOT_FONTPATH to the directory 
+# containing the font.
+
+DOT_FONTNAME           = FreeSans
+
+# The DOT_FONTSIZE tag can be used to set the size of the font of dot graphs. 
+# The default size is 10pt.
+
+DOT_FONTSIZE           = 10
+
+# By default doxygen will tell dot to use the output directory to look for the 
+# FreeSans.ttf font (which doxygen will put there itself). If you specify a 
+# different font using DOT_FONTNAME you can set the path where dot 
+# can find it using this tag.
+
+DOT_FONTPATH           = 
+
+# If the CLASS_GRAPH and HAVE_DOT tags are set to YES then doxygen 
+# will generate a graph for each documented class showing the direct and 
+# indirect inheritance relations. Setting this tag to YES will force the 
+# the CLASS_DIAGRAMS tag to NO.
+
+CLASS_GRAPH            = YES
+
+# If the COLLABORATION_GRAPH and HAVE_DOT tags are set to YES then doxygen 
+# will generate a graph for each documented class showing the direct and 
+# indirect implementation dependencies (inheritance, containment, and 
+# class references variables) of the class with other documented classes.
+
+COLLABORATION_GRAPH    = YES
+
+# If the GROUP_GRAPHS and HAVE_DOT tags are set to YES then doxygen 
+# will generate a graph for groups, showing the direct groups dependencies
+
+GROUP_GRAPHS           = YES
+
+# If the UML_LOOK tag is set to YES doxygen will generate inheritance and 
+# collaboration diagrams in a style similar to the OMG's Unified Modeling 
+# Language.
+
+UML_LOOK               = NO
+
+# If set to YES, the inheritance and collaboration graphs will show the 
+# relations between templates and their instances.
+
+TEMPLATE_RELATIONS     = NO
+
+# If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDE_GRAPH, and HAVE_DOT 
+# tags are set to YES then doxygen will generate a graph for each documented 
+# file showing the direct and indirect include dependencies of the file with 
+# other documented files.
+
+INCLUDE_GRAPH          = YES
+
+# If the ENABLE_PREPROCESSING, SEARCH_INCLUDES, INCLUDED_BY_GRAPH, and 
+# HAVE_DOT tags are set to YES then doxygen will generate a graph for each 
+# documented header file showing the documented files that directly or 
+# indirectly include this file.
+
+INCLUDED_BY_GRAPH      = YES
+
+# If the CALL_GRAPH and HAVE_DOT options are set to YES then 
+# doxygen will generate a call dependency graph for every global function 
+# or class method. Note that enabling this option will significantly increase 
+# the time of a run. So in most cases it will be better to enable call graphs 
+# for selected functions only using the \callgraph command.
+
+CALL_GRAPH             = NO
+
+# If the CALLER_GRAPH and HAVE_DOT tags are set to YES then 
+# doxygen will generate a caller dependency graph for every global function 
+# or class method. Note that enabling this option will significantly increase 
+# the time of a run. So in most cases it will be better to enable caller 
+# graphs for selected functions only using the \callergraph command.
+
+CALLER_GRAPH           = NO
+
+# If the GRAPHICAL_HIERARCHY and HAVE_DOT tags are set to YES then doxygen 
+# will graphical hierarchy of all classes instead of a textual one.
+
+GRAPHICAL_HIERARCHY    = YES
+
+# If the DIRECTORY_GRAPH, SHOW_DIRECTORIES and HAVE_DOT tags are set to YES 
+# then doxygen will show the dependencies a directory has on other directories 
+# in a graphical way. The dependency relations are determined by the #include 
+# relations between the files in the directories.
+
+DIRECTORY_GRAPH        = YES
+
+# The DOT_IMAGE_FORMAT tag can be used to set the image format of the images 
+# generated by dot. Possible values are png, jpg, or gif 
+# If left blank png will be used.
+
+DOT_IMAGE_FORMAT       = png
+
+# The tag DOT_PATH can be used to specify the path where the dot tool can be 
+# found. If left blank, it is assumed the dot tool can be found in the path.
+
+DOT_PATH               = 
+
+# The DOTFILE_DIRS tag can be used to specify one or more directories that 
+# contain dot files that are included in the documentation (see the 
+# \dotfile command).
+
+DOTFILE_DIRS           = 
+
+# The DOT_GRAPH_MAX_NODES tag can be used to set the maximum number of 
+# nodes that will be shown in the graph. If the number of nodes in a graph 
+# becomes larger than this value, doxygen will truncate the graph, which is 
+# visualized by representing a node as a red box. Note that doxygen if the 
+# number of direct children of the root node in a graph is already larger than 
+# DOT_GRAPH_MAX_NODES then the graph will not be shown at all. Also note 
+# that the size of a graph can be further restricted by MAX_DOT_GRAPH_DEPTH.
+
+DOT_GRAPH_MAX_NODES    = 50
+
+# The MAX_DOT_GRAPH_DEPTH tag can be used to set the maximum depth of the 
+# graphs generated by dot. A depth value of 3 means that only nodes reachable 
+# from the root by following a path via at most 3 edges will be shown. Nodes 
+# that lay further from the root node will be omitted. Note that setting this 
+# option to 1 or 2 may greatly reduce the computation time needed for large 
+# code bases. Also note that the size of a graph can be further restricted by 
+# DOT_GRAPH_MAX_NODES. Using a depth of 0 means no depth restriction.
+
+MAX_DOT_GRAPH_DEPTH    = 0
+
+# Set the DOT_TRANSPARENT tag to YES to generate images with a transparent 
+# background. This is disabled by default, because dot on Windows does not 
+# seem to support this out of the box. Warning: Depending on the platform used, 
+# enabling this option may lead to badly anti-aliased labels on the edges of 
+# a graph (i.e. they become hard to read).
+
+DOT_TRANSPARENT        = NO
+
+# Set the DOT_MULTI_TARGETS tag to YES allow dot to generate multiple output 
+# files in one run (i.e. multiple -o and -T options on the command line). This 
+# makes dot run faster, but since only newer versions of dot (>1.8.10) 
+# support this, this feature is disabled by default.
+
+DOT_MULTI_TARGETS      = NO
+
+# If the GENERATE_LEGEND tag is set to YES (the default) Doxygen will 
+# generate a legend page explaining the meaning of the various boxes and 
+# arrows in the dot generated graphs.
+
+GENERATE_LEGEND        = YES
+
+# If the DOT_CLEANUP tag is set to YES (the default) Doxygen will 
+# remove the intermediate dot files that are used to generate 
+# the various graphs.
+
+DOT_CLEANUP            = YES
+
+#---------------------------------------------------------------------------
+# Options related to the search engine
+#---------------------------------------------------------------------------
+
+# The SEARCHENGINE tag specifies whether or not a search engine should be 
+# used. If set to NO the values of all tags below this one will be ignored.
+
+SEARCHENGINE           = NO
Index: /issm/trunk/doc/website/doc_c/doxygenissm.css
===================================================================
--- /issm/trunk/doc/website/doc_c/doxygenissm.css	(revision 11)
+++ /issm/trunk/doc/website/doc_c/doxygenissm.css	(revision 11)
@@ -0,0 +1,525 @@
+
+/* Added by Mathieu Beginning */
+
+/**************************************/ 
+/*              HEADER                */ 
+/**************************************/ 
+#header { 
+	width: 900px; 
+	height: 202px; 
+	background: none;
+	color:white;
+	margin: 5px auto 50px auto;
+} 
+
+#header a{
+	color: white;
+	background: none;
+	text-decoration: none;
+}
+
+#header a:hover {
+	color: white;
+	background: none;
+	text-decoration: none;
+}
+
+/**************************************/ 
+/*              FOOTERS               */ 
+/**************************************/ 
+#footer {
+	font-size: small;
+	width: 1000px;
+	text-align: center;
+	margin: 0 auto;
+	clear: both;
+	border-top: 1px solid #d6d6d6;
+	padding-top: 10px;
+	padding-bottom: 10px;
+}
+
+#footer a{
+	color: white;
+	text-decoration: none;
+	background: none;
+}
+
+#footer a:hover {
+	color: white;
+	text-decoration: none;
+	background: none;
+}
+
+#footer strong {
+	color: #A020F0;
+	text-decoration: none;
+	background: none;
+}
+
+#footer strong:hover {
+	background-color: #6495ed;
+	color:white;
+}
+
+/**************************************/ 
+/*              Main content          */ 
+/**************************************/ 
+
+body, table, div, p, dl {
+	width:1000px;
+	background: none;
+	font-family: Arial, Verdana, Tahoma;
+	font-size: medium;
+	color: #404040;
+	margin: auto;
+}
+
+
+/* Added by Mathieu end*/
+
+/* @group Heading Levels */
+
+h1 {
+	background: transparent;
+	color: #6495ed;
+	font-size: xx-large;
+	text-align: center;
+}
+
+h2 {
+	background: transparent;
+	color: #6495ed;
+	font-size: large;
+	text-align: center;
+}
+
+h3 {
+	font-size: 100%;
+}
+
+/* @end */
+
+caption {
+	font-weight: bold;
+}
+
+div.qindex, div.navtab{
+	background-color: #e8eef2;
+	border: 1px solid #84b0c7;
+	text-align: center;
+	margin: 2px;
+	padding: 2px;
+}
+
+div.qindex, div.navpath {
+	width: 100%;
+	line-height: 140%;
+}
+
+div.navtab {
+	margin-right: 15px;
+}
+
+/* @group Link Styling */
+
+a {
+	color: black;
+	font-weight: normal;
+	font-size: medium;
+	text-decoration: none;
+}
+
+.contents a:visited {
+	color: #6495ed;
+}
+
+a:hover {
+	text-decoration: underline;
+}
+
+a.qindex {
+	font-weight: bold;
+}
+
+a.qindexHL {
+	font-weight: bold;
+	background-color: #6666cc;
+	color: #ffffff;
+	border: 1px double #9295C2;
+}
+
+.contents a.qindexHL:visited {
+        color: #ffffff;
+}
+
+a.el {
+	font-weight: bold;
+}
+
+a.elRef {
+}
+
+a.code {
+	font-size:small;
+}
+
+a.codeRef {
+}
+
+/* @end */
+
+dl.el {
+	margin-left: -1cm;
+}
+
+.fragment {
+	font-size:small;
+	font-family: monospace;
+}
+
+pre.fragment {
+	font-size:small;
+	border: 1px solid #CCCCCC;
+	background-color: #f5f5f5;
+	padding: 4px 6px;
+	margin: 4px 0 4px 0;
+}
+
+div.ah {
+	background-color: black;
+	font-weight: bold;
+	color: #ffffff;
+	margin-bottom: 3px;
+	margin-top: 3px
+}
+
+div.groupHeader {
+	margin-left: 16px;
+	margin-top: 12px;
+	margin-bottom: 6px;
+	font-weight: bold;
+}
+
+div.groupText {
+	margin-left: 16px;
+	font-style: italic;
+}
+
+td.indexkey {
+	background-color: #e8eef2;
+	font-weight: bold;
+	border: 1px solid #CCCCCC;
+	margin: 2px 0px 2px 0;
+	padding: 2px 10px;
+}
+
+td.indexkey a{
+	background:none;
+	color:#6495ed;
+}
+
+td.indexkey a:hover {
+	background:#6495ed;
+	color:white;
+}
+td.indexvalue {
+	background-color: #e8eef2;
+	border: 1px solid #CCCCCC;
+	padding: 2px 10px;
+	margin: 2px 0px;
+}
+
+tr.memlist {
+	background-color: #f0f0f0;
+}
+
+p.formulaDsp {
+	text-align: center;
+}
+
+img.formulaDsp {
+	
+}
+
+img.formulaInl {
+	vertical-align: middle;
+}
+
+/* @group Code Colorization */
+
+span.keyword {
+	color: #008000
+}
+
+span.keywordtype {
+	color: #604020
+}
+
+span.keywordflow {
+	color: #e08000
+}
+
+span.comment {
+	color: #800000
+}
+
+span.preprocessor {
+	color: #806020
+}
+
+span.stringliteral {
+	color: #002080
+}
+
+span.charliteral {
+	color: #008080
+}
+
+span.vhdldigit { 
+	color: #ff00ff 
+}
+
+span.vhdlchar { 
+	color: #000000 
+}
+
+span.vhdlkeyword { 
+	color: #700070 
+}
+
+span.vhdllogic { 
+	color: #ff0000 
+}
+
+/* @end */
+
+.search {
+	color: #003399;
+	font-weight: bold;
+}
+
+form.search {
+	margin-bottom: 0px;
+	margin-top: 0px;
+}
+
+input.search {
+	font-size: 75%;
+	color: #000080;
+	font-weight: normal;
+	background-color: #e8eef2;
+}
+
+td.tiny {
+	font-size: 75%;
+}
+
+.dirtab {
+	padding: 4px;
+	border-collapse: collapse;
+	border: 1px solid #84b0c7;
+}
+
+th.dirtab {
+	background: #e8eef2;
+	font-weight: bold;
+}
+
+hr {
+	height: 0;
+	border: none;
+	border-top: 1px solid #666;
+}
+
+/* @group Member Descriptions */
+
+.mdescLeft, .mdescRight,
+.memItemLeft, .memItemRight,
+.memTemplItemLeft, .memTemplItemRight, .memTemplParams {
+	background-color: #FAFAFA;
+	border: none;
+	margin: 4px;
+	padding: 1px 0 0 8px;
+}
+
+.mdescLeft, .mdescRight {
+	padding: 0px 8px 4px 8px;
+	color: #555;
+}
+
+.memItemLeft, .memItemRight, .memTemplParams {
+	border-top: 1px solid #ccc;
+}
+
+.memTemplParams {
+	color: #606060;
+}
+
+/* @end */
+
+/* @group Member Details */
+
+/* Styles for detailed member documentation */
+
+.memtemplate {
+	font-size: 80%;
+	color: #606060;
+	font-weight: normal;
+	margin-left: 3px;
+}
+
+.memnav {
+	background-color: #e8eef2;
+	border: 1px solid #84b0c7;
+	text-align: center;
+	margin: 2px;
+	margin-right: 15px;
+	padding: 2px;
+}
+
+.memitem {
+	padding: 0;
+}
+
+.memname {
+	white-space: nowrap;
+	font-weight: bold;
+}
+
+.memproto, .memdoc {
+	border: 1px solid #84b0c7;	
+}
+
+.memproto {
+	padding: 0;
+	background-color: #d5e1e8;
+	font-weight: bold;
+	-webkit-border-top-left-radius: 8px;
+	-webkit-border-top-right-radius: 8px;
+	-moz-border-radius-topleft: 8px;
+	-moz-border-radius-topright: 8px;
+}
+
+.memdoc {
+	padding: 2px 5px;
+	background-color: #eef3f5;
+	border-top-width: 0;
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+}
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+}
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+}
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+}
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+	display: none;
+	margin: 0px;
+}
+
+.directory img {
+	vertical-align: -30%;
+}
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+
+.directory-alt {
+	font-size: 100%;
+	font-weight: bold;
+}
+
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+	margin: 0px;
+	margin-top: 1em;
+	font-size: 11pt;
+}
+
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+}
+
+.directory-alt p {
+	margin: 0px;
+	white-space: nowrap;
+}
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+	display: none;
+	margin: 0px;
+}
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+.directory-alt img {
+	vertical-align: -30%;
+}
+
+/* @end */
+
+address {
+	font-style: normal;
+	color: #333;
+}
Index: /issm/trunk/doc/website/doc_c/footerissm.html
===================================================================
--- /issm/trunk/doc/website/doc_c/footerissm.html	(revision 11)
+++ /issm/trunk/doc/website/doc_c/footerissm.html	(revision 11)
@@ -0,0 +1,8 @@
+<div id="footer"> 
+	Copyright &copy; 2009 Caltech JPL, generated by &nbsp;
+	<a href="http://www.doxygen.org/index.html"><img src="doxygen.png" alt="doxygen" align="center" height=20px/></a> 1.5.8
+	<a href="http://www.nasa.gov"><img src="../logo_NASA.png" alt="Logo NASA" align="left" height=50px/></a>
+	<a href="http://www.jpl.nasa.gov"><img src="../logo_JPL.png" alt="Logo JPL" align="right" height=30px/></a>
+	</div>
+</body>
+</html>
Index: /issm/trunk/doc/website/doc_c/headerissm.html
===================================================================
--- /issm/trunk/doc/website/doc_c/headerissm.html	(revision 11)
+++ /issm/trunk/doc/website/doc_c/headerissm.html	(revision 11)
@@ -0,0 +1,10 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN">
+<html><head><meta http-equiv="Content-Type" content="text/html;charset=UTF-8">
+		<title>ISSM: Main Page</title>
+		<link href="tabs.css" rel="stylesheet" type="text/css">
+		<link href="doxygenissm.css" rel="stylesheet" type="text/css">
+	</head>
+	<body>
+		<div id="header">
+			<a href="../../../index.html"><img src="../headerissm.png" alt="ISSM Header"></a>
+		</div>
Index: /issm/trunk/doc/website/doc_c/layoutissm.xml
===================================================================
--- /issm/trunk/doc/website/doc_c/layoutissm.xml	(revision 11)
+++ /issm/trunk/doc/website/doc_c/layoutissm.xml	(revision 11)
@@ -0,0 +1,184 @@
+<doxygenlayout version="1.0">
+	<!-- Navigation index tabs for HTML output -->
+	<navindex>
+		<tab type="mainpage" visible="" title="C code documentation"/>
+		<tab type="pages" visible="yes" title=""/>
+		<tab type="modules" visible="yes" title=""/>
+		<tab type="namespaces" visible="yes" title="">
+			<tab type="namespaces" visible="yes" title=""/>
+			<tab type="namespacemembers" visible="yes" title=""/>
+		</tab>
+		<tab type="classes" visible="yes" title="">
+			<tab type="classes" visible="yes" title=""/>
+			<tab type="classindex" visible="$ALPHABETICAL_INDEX" title=""/> 
+			<tab type="hierarchy" visible="yes" title=""/>
+			<tab type="classmembers" visible="yes" title=""/>
+		</tab>
+		<tab type="files" visible="yes" title="">
+			<tab type="files" visible="yes" title=""/>
+			<tab type="globals" visible="yes" title=""/>
+		</tab>
+		<tab type="dirs" visible="yes" title=""/>
+		<tab type="examples" visible="yes" title=""/>  
+	</navindex>
+
+	<!-- Layout definition for a class page -->
+	<class>
+		<briefdescription visible="yes"/>
+		<includes visible="$SHOW_INCLUDE_FILES"/>
+		<inheritancegraph visible="$CLASS_GRAPH"/>
+		<collaborationgraph visible="$COLLABORATION_GRAPH"/>
+		<allmemberslink visible="yes"/>
+		<memberdecl>
+			<nestedclasses visible="yes" title=""/>
+			<publictypes title=""/>
+			<publicslots title=""/>
+			<signals title=""/>
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+			<publicstaticattributes title=""/>
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+			<packagetypes title=""/>
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+			<packagestaticmethods title=""/>
+			<packageattributes title=""/>
+			<packagestaticattributes title=""/>
+			<properties title=""/>
+			<events title=""/>
+			<privatetypes title=""/>
+			<privateslots title=""/>
+			<privatemethods title=""/>
+			<privatestaticmethods title=""/>
+			<privateattributes title=""/>
+			<privatestaticattributes title=""/>
+			<friends title=""/>
+			<related title="" subtitle=""/>
+			<membergroups visible="yes"/>
+		</memberdecl>
+		<detaileddescription title=""/>
+		<memberdef>
+			<typedefs title=""/>
+			<enums title=""/>
+			<constructors title=""/>
+			<functions title=""/>
+			<related title=""/>
+			<variables title=""/>
+			<properties title=""/>
+			<events title=""/>
+		</memberdef>
+		<usedfiles visible="$SHOW_USED_FILES"/>
+		<authorsection visible="yes"/>
+	</class>
+
+	<!-- Layout definition for a namespace page -->
+	<namespace>
+		<briefdescription visible="yes"/>
+		<memberdecl>
+			<nestednamespaces visible="yes" title=""/>
+			<classes visible="yes" title=""/>
+			<typedefs title=""/>
+			<enums title=""/>
+			<functions title=""/>
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+			<membergroups visible="yes"/>
+		</memberdecl>
+		<detaileddescription title=""/>
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+		<authorsection visible="yes"/>
+	</namespace>
+
+	<!-- Layout definition for a file page -->
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+		<briefdescription visible="yes"/>
+		<includes visible="$SHOW_INCLUDE_FILES"/>
+		<includegraph visible="$INCLUDE_GRAPH"/>
+		<includedbygraph visible="$INCLUDED_BY_GRAPH"/>
+		<sourcelink visible="yes"/>
+		<memberdecl>
+			<classes visible="yes" title=""/>
+			<namespaces visible="yes" title=""/>
+			<defines title=""/>
+			<typedefs title=""/>
+			<enums title=""/>
+			<functions title=""/>
+			<variables title=""/>
+			<membergroups visible="yes"/>
+		</memberdecl>
+		<detaileddescription title=""/>
+		<memberdef>
+			<defines title=""/>
+			<typedefs title=""/>
+			<enums title=""/>
+			<functions title=""/>
+			<variables title=""/>
+		</memberdef>
+		<authorsection/>
+	</file>
+
+	<!-- Layout definition for a group page -->
+	<group>
+		<briefdescription visible="yes"/>
+		<groupgraph visible="$GROUP_GRAPHS"/>
+		<memberdecl>
+			<classes visible="yes" title=""/>
+			<namespaces visible="yes" title=""/>
+			<dirs visible="yes" title=""/>
+			<nestedgroups visible="yes" title=""/>
+			<files visible="yes" title=""/>
+			<defines title=""/>
+			<typedefs title=""/>
+			<enums title=""/>
+			<enumvalues title=""/>
+			<functions title=""/>
+			<variables title=""/>
+			<signals title=""/>
+			<publicslots title=""/>
+			<protectedslots title=""/>
+			<privateslots title=""/>
+			<events title=""/>
+			<properties title=""/>
+			<friends title=""/>
+			<membergroups visible="yes"/>
+		</memberdecl>
+		<detaileddescription title=""/>
+		<memberdef>
+			<pagedocs/>
+			<defines title=""/>
+			<typedefs title=""/>
+			<enums title=""/>
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+			<functions title=""/>
+			<variables title=""/>
+			<signals title=""/>
+			<publicslots title=""/>
+			<protectedslots title=""/>
+			<privateslots title=""/>
+			<events title=""/>
+			<properties title=""/>
+			<friends title=""/>
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+	<!-- Layout definition for a directory page -->
+	<directory>
+		<briefdescription visible="yes"/>
+		<directorygraph visible="yes"/>
+		<memberdecl>
+			<dirs visible="yes"/>
+			<files visible="yes"/>
+		</memberdecl>
+		<detaileddescription title=""/>
+	</directory>
+</doxygenlayout>
Index: /issm/trunk/doc/website/doc_c/tabsissm.css
===================================================================
--- /issm/trunk/doc/website/doc_c/tabsissm.css	(revision 11)
+++ /issm/trunk/doc/website/doc_c/tabsissm.css	(revision 11)
@@ -0,0 +1,119 @@
+/* tabs styles, based on http://www.alistapart.com/articles/slidingdoors */
+
+DIV.tabs
+{
+	width : 100%;
+	float: right;
+	padding: 0px 10px 5px 5px;
+	margin-bottom: 1px;
+	text-align: center;
+   background       : none;
+}
+
+DIV.tabs UL
+{
+   margin           : 0px;
+   padding-left     : 0px;
+   list-style       : none;
+}
+
+DIV.tabs LI, DIV.tabs FORM
+{
+   display          : inline;
+   margin           : 0px;
+   padding          : 0px;
+}
+
+DIV.tabs FORM
+{
+   float            : right;
+}
+
+DIV.tabs A
+{
+   float            : left;
+   background       : none;
+   font-size        : medium;
+   font-weight      : normal;
+   text-decoration  : none;
+	color            : #404040;
+	border: 2px solid #6495ed;	
+	-webkit-border-top-left-radius: 8px;
+	-webkit-border-top-right-radius: 8px;
+	-moz-border-radius-topleft: 8px;
+	-moz-border-radius-topright: 8px;
+	-webkit-border-bottom-left-radius: 8px ;
+	-webkit-border-bottom-right-radius: 8px;
+	-moz-border-radius-bottomleft: 8px;
+	-moz-border-radius-bottomright: 8px;
+}
+
+DIV.tabs A:hover
+{
+	border: 2px solid #404040;	
+	color: #6495ed;
+	background: #404040;
+	text-decoration: none;
+}
+
+DIV.tabs SPAN
+{
+   float            : left;
+   display          : block;
+   background       : none;
+   padding          : 5px 20px;
+   white-space      : nowrap;
+}
+
+DIV.tabs INPUT
+{
+   float            : right;
+   display          : inline;
+   font-size        : 1em;
+}
+
+DIV.tabs TD
+{
+   font-size        : 80%;
+   font-weight      : bold;
+   text-decoration  : none;
+}
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+
+/* Commented Backslash Hack hides rule from IE5-Mac \*/
+DIV.tabs SPAN {float : none;}
+/* End IE5-Mac hack */
+
+DIV.tabs A:hover SPAN
+{
+   background-position: 0% -150px;
+}
+
+DIV.tabs LI.current A
+{
+	color: #6495ed;
+	background: #404040;
+	text-decoration: none;
+}
+
+DIV.tabs LI.current SPAN
+{
+	color: #6495ed;
+	text-decoration: none;
+}
+
+DIV.tabs LI.current:hover SPAN
+{
+	border-color: #404040;	
+	color:#6495ed; 
+}
+DIV.navpath
+{
+   background       : none;
+   border           : none;
+   border-bottom    : 1px solid #84B0C7;
+   text-align       : center;
+   margin           : 2px;
+   padding          : 2px;
+}
Index: /issm/trunk/doc/website/doc_html/about.html
===================================================================
--- /issm/trunk/doc/website/doc_html/about.html	(revision 11)
+++ /issm/trunk/doc/website/doc_html/about.html	(revision 11)
@@ -0,0 +1,76 @@
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+	<head>
+		<title>Ice Sheet System Model, About us</title>
+		<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+		<meta name="author" content="ISSM Team" />
+		<meta name="copyright" content="Caltech" />
+		<meta name="description" content="ISSM website" />
+		<meta name="keywords" content="" />
+		<meta name="robots" content="all, follow" />
+		<link rel="stylesheet" href="style.css" type="text/css" media="screen" />
+	</head>
+	<body>
+		<a name="top"></a>
+		<div id="header">
+			<a href="../../index.html"><img src="headerissm.png" alt="header"></a>
+		</div>
+		<div id="page">
+			<div id="content">
+
+
+				<!--<h1>Table of content</h1>
+				<ul>
+					<li><a href="#ISSM team" title="ISSM team">ISSM team</a></li>
+					<li><a href="#Funding" title="Funding">Funding</a></li>
+					<li><a href="#Contact us" title="Contact us">Contact us</a></li>
+				</ul>-->
+
+
+				<h1 id="ISSM team">ISSM team</h1>
+				<p>Team manager: <a href="mailto:eric.rignot@jpl.nasa.gov?subject=[Email from ISSM Website]">Eric Rignot<sup> 1,3</sup></a></p>
+				<p>Code manager: <a href="mailto:eric.larour@jpl.nasa.gov?subject=[Email from ISSM Website]">Eric Larour<sup> 1</sup></a></p>
+				<p>The current developers are:</p>
+				<ul>
+					<li><a href="mailto:eric.larour@jpl.nasa.gov?subject=[Email from ISSM Website]">Eric Larour<sup> 1</sup></a></li>
+					<li><a href="mailto:helene.seroussi@jpl.nasa.gov?subject=[Email from ISSM Website]">Helene Seroussi<sup> 1,2</sup></a></li>
+					<li><a href="mailto:mathieu.morlighem@jpl.nasa.gov?subject=[Email from ISSM Website]">Mathieu Morlighem<sup> 1,2</sup></a></li>
+				</ul>
+				<p>Model implementation: <a href="mailto:ala.khazendar@jpl.nasa.gov?subject=[Email from ISSM Website]">Ala Khazendar<sup> 1</sup></a></p>
+				<p><sup>1</sup> Jet Propulsion Laboratory - California Institute of Technology, Pasadena, CA 91109-8099,USA<br>
+				<sup>2</sup> Laboratoire MSSMat - CNRS U.M.R 8579, Ecole Centrale Paris, France<br>
+				<sup>3</sup> University of California Irvine, Croul Hall, Irvine CA 92697, USA
+				</p>
+
+
+				<h1 id="Funding">Funding</h1>
+				<p>ISSM is funded by JPL R&TD (Research and Technology Development) and NASA's Cryosphere Science Program. Development has been performed at the California Institute of Technology's Jet Propulsion Laboratory under a contract
+				with the National Aeronautics and Space Administration's Cryosphere Science Program.</p>
+
+
+				<h1 id="Contact us">Contact us</h1>
+				<p>for any question or concern, please do not hesitate to <a href="mailto:eric.larour@jpl.nasa.gov?subject=[Email from ISSM Website]">contact</a>
+				us. We will be pleased to help you.</p> 
+
+			</div>
+
+			<div id="menu">
+				<h1>Menu</h1>
+				<ul>
+					<li><a href="../../index.html" title="Home">Home</a></li>
+					<li><a href="about.html" title="About us">About us</a></li>
+					<li><a href="features.html" title="Features">Features</a></li>
+					<li><a href="documentation.html" title="Documentation">Documentation</a></li>
+					<li><a href="download.html" title="Download">Download</a></li>
+					<li><a href="installation.html" title="Installation">Installation</a></li>
+					<li><a href="wiki.html" title="Developers Site">Developers Site</a></li>
+					<li><a href="faq.html" title="FAQ">FAQ</a></li>
+				</ul>
+			</div>
+		</div>
+		<div id="footer"> 
+			<p style="float: left"><a href="http://www.nasa.gov"><img src="logo_NASA.png" alt="Logo NASA" height=50px/></a></p>
+				Copyright &copy; 2009 Caltech
+				<p style="float: right"><a href="http://www.jpl.nasa.gov"><img src="logo_JPL.png" alt="Logo JPL" height=30px/></a></p>
+			</div>
+		</body>
+	</html>
Index: /issm/trunk/doc/website/doc_html/documentation.html
===================================================================
--- /issm/trunk/doc/website/doc_html/documentation.html	(revision 11)
+++ /issm/trunk/doc/website/doc_html/documentation.html	(revision 11)
@@ -0,0 +1,52 @@
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+	<head>
+		<title>Ice Sheet System Model, Documentation</title>
+		<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+		<meta name="author" content="ISSM Team" />
+		<meta name="copyright" content="Caltech" />
+		<meta name="description" content="ISSM website" />
+		<meta name="keywords" content="" />
+		<meta name="robots" content="all, follow" />
+		<link rel="stylesheet" href="style.css" type="text/css" media="screen" />
+	</head>
+	<body>
+		<a name="top"></a>
+		<div id="header">
+			<a href="../../index.html"><img src="headerissm.png" alt="header"></a>
+		</div>
+		<div id="page">
+			<div id="content">
+
+				<h1 class="article-title" title="User Guide">User Guide</h1>
+				<p>Here is the [pdf] <a href="../../userguide.pdf" title="pdfuserguide"><u>user guide</u></a>. It describes how to install ISSM and how to get strated.</p>
+
+				<h1 class="article-title" title="Theory Guide">Theory Guide</h1>
+				<p>Here is the [pdf] <a href="../../theoryguide.pdf" title="pdftheoryguide"><u>theory guide</u></a> for users who want to know more about the theory of ice sheet modeling and finite element.</p>
+
+				<h1 class="article-title" title="developer Guide">Developer Guide</h1>
+				<p>ISSM is hosted on Matlab coded in C, C++. Here are the corresponding documentation:</p>
+				<li><a href="../doc_m/matlabhtml/ice1/menu.html" title="Mhtml"><u>Matlab code documentation</u></a></li>
+				<li><a href="../doc_c/chtml/index.html" title="Chtml"><u>C  and C++ code documentation</u></a></li>
+			</div>
+
+			<div id="menu">
+				<h1>Menu</h1>
+				<ul>
+					<li><a href="../../index.html" title="Home">Home</a></li>
+					<li><a href="about.html" title="About us">About us</a></li>
+					<li><a href="features.html" title="Features">Features</a></li>
+					<li><a href="documentation.html" title="Documentation">Documentation</a></li>
+					<li><a href="download.html" title="Download">Download</a></li>
+					<li><a href="installation.html" title="Installation">Installation</a></li>
+					<li><a href="wiki.html" title="Developers Site">Developers Site</a></li>
+					<li><a href="faq.html" title="FAQ">FAQ</a></li>
+				</ul>
+			</div>
+		</div>
+		<div id="footer"> 
+			<p style="float: left"><a href="http://www.nasa.gov"><img src="logo_NASA.png" alt="Logo NASA" height=50px/></a></p>
+				Copyright &copy; 2009 Caltech
+				<p style="float: right"><a href="http://www.jpl.nasa.gov"><img src="logo_JPL.png" alt="Logo JPL" height=30px/></a></p>
+			</div>
+		</body>
+	</html>
Index: /issm/trunk/doc/website/doc_html/download.html
===================================================================
--- /issm/trunk/doc/website/doc_html/download.html	(revision 11)
+++ /issm/trunk/doc/website/doc_html/download.html	(revision 11)
@@ -0,0 +1,59 @@
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+	<head>
+		<title>Ice Sheet System Model, Download</title>
+		<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+		<meta name="author" content="ISSM Team" />
+		<meta name="copyright" content="Caltech" />
+		<meta name="description" content="ISSM website" />
+		<meta name="keywords" content="" />
+		<meta name="robots" content="all, follow" />
+		<link rel="stylesheet" href="style.css" type="text/css" media="screen" />
+	</head>
+	<body>
+		<a name="top"></a>
+		<div id="header">
+			<a href="../../index.html"><img src="headerissm.png" alt="header"></a>
+		</div>
+		<div id="page">
+			<div id="content">
+
+				<h1>Requirements</h1>
+				<p>ISSM should work on any LINUX/UNIX based (Mac OS X) operating system. Still, several tweaks need to be
+				made to compile the modules correctly.</p>
+
+				<h1>Download ISSM</h1>
+				<p>ISSM is a work in progress, several versions are available. Here are the latest versions:</p>
+				<ul>
+					<li> The latest stable version <a href="#">ISSM_stable.tar.gz</a>
+					<li> The latest version <a href="#">ISSM.tar.gz</a>
+				</ul>
+				<p>You can download the preivous stable versions here:</p>
+				<ul>
+					<li> ICE2 (1/2009) <a href="#">ICE2.tar.gz</a>
+					<li> ICE1 (4/2009) <a href="#">ICE1.tar.gz</a>
+				</ul>
+				<p>
+
+			</div>
+
+			<div id="menu">
+				<h1>Menu</h1>
+				<ul>
+					<li><a href="../../index.html" title="Home">Home</a></li>
+					<li><a href="about.html" title="About us">About us</a></li>
+					<li><a href="features.html" title="Features">Features</a></li>
+					<li><a href="documentation.html" title="Documentation">Documentation</a></li>
+					<li><a href="download.html" title="Download">Download</a></li>
+					<li><a href="installation.html" title="Installation">Installation</a></li>
+					<li><a href="wiki.html" title="Developers Site">Developers Site</a></li>
+					<li><a href="faq.html" title="FAQ">FAQ</a></li>
+				</ul>
+			</div>
+		</div>
+		<div id="footer"> 
+			<p style="float: left"><a href="http://www.nasa.gov"><img src="logo_NASA.png" alt="Logo NASA" height=50px/></a></p>
+				Copyright &copy; 2009 Caltech
+				<p style="float: right"><a href="http://www.jpl.nasa.gov"><img src="logo_JPL.png" alt="Logo JPL" height=30px/></a></p>
+			</div>
+		</body>
+	</html>
Index: /issm/trunk/doc/website/doc_html/faq.html
===================================================================
--- /issm/trunk/doc/website/doc_html/faq.html	(revision 11)
+++ /issm/trunk/doc/website/doc_html/faq.html	(revision 11)
@@ -0,0 +1,47 @@
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+	<head>
+		<title>Ice Sheet System Model, FAQ</title>
+		<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+		<meta name="author" content="ISSM Team" />
+		<meta name="copyright" content="Caltech" />
+		<meta name="description" content="ISSM website" />
+		<meta name="keywords" content="" />
+		<meta name="robots" content="all, follow" />
+		<link rel="stylesheet" href="style.css" type="text/css" media="screen" />
+	</head>
+	<body>
+		<a name="top"></a>
+		<div id="header">
+			<a href="../../index.html"><img src="headerissm.png" alt="header"></a>
+		</div>
+		<div id="page">
+			<div id="content">
+				<h1>Is it possible to install ISSM on a Windows machine?</h1>
+				<p>No. In the future this possibility could be investigated...</p>
+
+				<h1>What can I do if the modules won't compile?</h1>
+				<p>This is a big issue. A lot depend on your operating system and there is no general rule... You can have a look at the 
+				files etc/environment_variables and the install.sh files of each package and change what needs to be changed.</p>
+			</div>
+
+			<div id="menu">
+				<h1>Menu</h1>
+				<ul>
+					<li><a href="../../index.html" title="Home">Home</a></li>
+					<li><a href="about.html" title="About us">About us</a></li>
+					<li><a href="features.html" title="Features">Features</a></li>
+					<li><a href="documentation.html" title="Documentation">Documentation</a></li>
+					<li><a href="download.html" title="Download">Download</a></li>
+					<li><a href="installation.html" title="Installation">Installation</a></li>
+					<li><a href="wiki.html" title="Developers Site">Developers Site</a></li>
+					<li><a href="faq.html" title="FAQ">FAQ</a></li>
+				</ul>
+			</div>
+		</div>
+		<div id="footer"> 
+			<p style="float: left"><a href="http://www.nasa.gov"><img src="logo_NASA.png" alt="Logo NASA" height=50px/></a></p>
+				Copyright &copy; 2009 Caltech
+				<p style="float: right"><a href="http://www.jpl.nasa.gov"><img src="logo_JPL.png" alt="Logo JPL" height=30px/></a></p>
+			</div>
+		</body>
+	</html>
Index: /issm/trunk/doc/website/doc_html/features.html
===================================================================
--- /issm/trunk/doc/website/doc_html/features.html	(revision 11)
+++ /issm/trunk/doc/website/doc_html/features.html	(revision 11)
@@ -0,0 +1,42 @@
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+	<head>
+		<title>Ice Sheet System Model, features</title>
+		<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+		<meta name="author" content="ISSM Team" />
+		<meta name="copyright" content="Caltech" />
+		<meta name="description" content="ISSM website" />
+		<meta name="keywords" content="" />
+		<meta name="robots" content="all, follow" />
+		<link rel="stylesheet" href="style.css" type="text/css" media="screen" />
+	</head>
+	<body>
+		<a name="top"></a>
+		<div id="header">
+			<a href="../../index.html"><img src="headerissm.png" alt="header"></a>
+		</div>
+		<div id="page">
+			<div id="content">
+				<center><img src="at_work.gif" alt="Under Construction"></center>
+			</div>
+
+			<div id="menu">
+				<h1>Menu</h1>
+				<ul>
+					<li><a href="../../index.html" title="Home">Home</a></li>
+					<li><a href="about.html" title="About us">About us</a></li>
+					<li><a href="features.html" title="Features">Features</a></li>
+					<li><a href="documentation.html" title="Documentation">Documentation</a></li>
+					<li><a href="download.html" title="Download">Download</a></li>
+					<li><a href="installation.html" title="Installation">Installation</a></li>
+					<li><a href="wiki.html" title="Developers Site">Developers Site</a></li>
+					<li><a href="faq.html" title="FAQ">FAQ</a></li>
+				</ul>
+			</div>
+		</div>
+		<div id="footer"> 
+			<p style="float: left"><a href="http://www.nasa.gov"><img src="logo_NASA.png" alt="Logo NASA" height=50px/></a></p>
+				Copyright &copy; 2009 Caltech
+				<p style="float: right"><a href="http://www.jpl.nasa.gov"><img src="logo_JPL.png" alt="Logo JPL" height=30px/></a></p>
+			</div>
+		</body>
+	</html>
Index: /issm/trunk/doc/website/doc_html/installation.html
===================================================================
--- /issm/trunk/doc/website/doc_html/installation.html	(revision 11)
+++ /issm/trunk/doc/website/doc_html/installation.html	(revision 11)
@@ -0,0 +1,128 @@
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+	<head>
+		<title>Ice Sheet System Model, Installation</title>
+		<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+		<meta name="author" content="ISSM Team" />
+		<meta name="copyright" content="Caltech" />
+		<meta name="description" content="ISSM website" />
+		<meta name="keywords" content="" />
+		<meta name="robots" content="all, follow" />
+		<link rel="stylesheet" href="style.css" type="text/css" media="screen" />
+	</head>
+	<body>
+		<a name="top"></a>
+		<div id="header">
+			<a href="../../index.html"><img src="headerissm.png" alt="header"></a>
+		</div>
+		<div id="page">
+			<div id="content">
+
+				<h1>Table of content</h1>
+				<ul>
+					<li><a href="#Downloading the code" title="Downloading the code">Downloading the code</a></li>
+					<li><a href="#Configuration of your .bashrc" title="Configuration of your .bashrc">Configuration of your .bashrc</a></li>
+					<li><a href="#Setting up the configuration file" title="Setting up the configuration file">Setting up the configuration file</a></li>
+					<li><a href="#Packages installation" title="Packages installation">Packages installation</a></li>
+					<li><a href="#ISSM compilation" title="ISSM compilation">ISSM compilation</a></li>
+				</ul>
+
+
+
+				<h1 id="Downloading the code">Downloading the code</h1>
+				<p>To download ISSM, you can either use the link on the right panel or use <a href="http://www.nongnu.org/cvs/">CVS</a>.</p> 
+				<p>ISSM is actively managed using a code versioning  system called <a href="http://www.nongnu.org/cvs/">CVS</a>.
+				The code is stored in a repository, and can be remotely fetched, modified, updated, and uploaded.
+				This allows for multiple users to develop the code in an organized way.
+				In order to fetch a version of the code, users will need to install <a href="http://www.nongnu.org/cvs/">CVS</a> on their machine.</p>
+				<p>Once <a href="http://www.nongnu.org/cvs/">CVS</a> has been installed, issue the following command:</p>
+				<div class="fragment"> > cvs -d useraccount@wilkes.jpl.nasa.gov:/home/larour/Ice_Repository  co -r ice2 -P ice1</div>
+				<p>This command will download the stable version of the code ISSM named ice2 from the repository on the wilkes machine,
+				located in the /home/larour/Ice_Repository directory, onto the current local directory (replace useraccount by your user name on wilkes).
+				Users are free to choose whichever location they want and to rename ice1.  Users should not forget the -P option.
+				Failing to do so would allow <a href="http://www.nongnu.org/cvs/">CVS</a> to fetch empty directories.
+				This would result in a code structure not intended by the developers.</p>
+
+
+				<h1 id="Configuration of your .bashrc">Configuration of your .bashrc</h1>
+				<p>In order for ISSM to work correctly, you should add the following lines in your shell
+				environment script (.bashrc or .cshrc). </p>
+				<div class="fragment"> #ISSM<br>
+					export ISSM_DIR=ISSMPATH<br>
+					source $ISSM_DIR/etc/environment.sh
+				</div>
+				<p>Where ISSMPATH is the path of ISSM main directory (ex: /home/user1/issm1).
+				When this is done, type in the prompt:</p>
+				<div class="fragment"> > bash</div>
+
+
+				<h1 id="Setting up the configuration file">Setting up the configuration file</h1>
+				<p>For the next step, go to etc:</p>
+				<div class="fragment"> > cd $ISSM_DIR/etc</div>
+				<p>This directory holds configuration files needed by various makefiles
+				across the ICE code to compile "C" code.  For this code to compile correctly,
+				ICE needs to know which type of OS the user is running, and pick up
+				the correct configuration file. By default, ICE will look for the
+				config.mk file in the MexConfig directory. If this file does not
+				point to the correct OS dependent configuration file, the compilation
+				will fail.</p>
+				<p>Users should therefore identify their OS configuration file in the
+				set of configuration files present in the MexConfig directory (
+				ex: config_linux.mk for a 32 bits linux OS, config_linux64.mk
+				for a 64 bits linux OS, etc ...) and rename this file to config.mk</p>
+				<p>For example, on a linux 32 bits platform, in the MexConfig directory,
+				find the linux 32 bits configuration file, and type:</p>
+				<div class="fragment"> > cp ./config_linux32.mk ./config.mk</div>
+				<p>Users familiar with symbolic linking can also try:</p>
+				<div class="fragment"> > ln -s  ./config_linux32.mk ./config.mk</div>
+				<p>The rest of the files in this directory are related to matlab compiler settings
+				that have been tweaked for platform compatibility purposes. Users should not
+				modify them, unless familiar with the 'mex' compiler.</p>
+
+
+				<h1 id="Packages installation">Packages installation</h1>
+				<p>For the next step, go to packages directory:</p>
+				<div class="fragment"> > cd $ISSM_DIR/packages</div>
+				<p>several packages may be installed depending on what users want to do.
+				At least the following two packages must be installed:</p>
+				<ul>
+					<li>metis</li>
+					<li>triangle</li>
+				</ul>
+				<p>To install all the ISSM libraries: type make, or go into each library folder and type:</p>
+				<div class="fragment"> > sh install.sh</div>
+				<p>We advise to do the latter, should any problems arise during the libraries compilation,
+				users will be able to spot the problematic library more easily. Just remember to compile
+				the libraries in the same order as the Makefile.</p>
+				<p>There is no guarantee the compilation will work on all systems. A lot of tweaking of the
+				install.sh files will probably be involved. Especially, the configuration part of the install.</p>
+
+
+				<h1 id="ISSM compilation">ISSM compilation</h1>
+				<p>The final step consists in compiling all the modules of ISSM. Go to ISSM main directory and type:</p>
+				<div class="fragment"> > cd $ISSM_DIR <br>
+					>make -f MakefileIce
+				</div>
+				<p>ISSM installation is done!</p>
+			</div>
+
+			<div id="menu">
+				<h1>Menu</h1>
+				<ul>
+					<li><a href="../../index.html" title="Home">Home</a></li>
+					<li><a href="about.html" title="About us">About us</a></li>
+					<li><a href="features.html" title="Features">Features</a></li>
+					<li><a href="documentation.html" title="Documentation">Documentation</a></li>
+					<li><a href="download.html" title="Download">Download</a></li>
+					<li><a href="installation.html" title="Installation">Installation</a></li>
+					<li><a href="wiki.html" title="Developers Site">Developers Site</a></li>
+					<li><a href="faq.html" title="FAQ">FAQ</a></li>
+				</ul>
+			</div>
+		</div>
+		<div id="footer"> 
+			<p style="float: left"><a href="http://www.nasa.gov"><img src="logo_NASA.png" alt="Logo NASA" height=50px/></a></p>
+				Copyright &copy; 2009 Caltech
+				<p style="float: right"><a href="http://www.jpl.nasa.gov"><img src="logo_JPL.png" alt="Logo JPL" height=30px/></a></p>
+			</div>
+		</body>
+	</html>
Index: /issm/trunk/doc/website/doc_html/style.css
===================================================================
--- /issm/trunk/doc/website/doc_html/style.css	(revision 11)
+++ /issm/trunk/doc/website/doc_html/style.css	(revision 11)
@@ -0,0 +1,204 @@
+/**************************************/
+/*              HEADER                */
+/**************************************/
+#header { 
+	width: 900px; 
+	height: 202px; 
+	background: none;
+	color:white;
+	margin: 5px auto 30px auto; 
+} 
+
+#header a{
+	color: white;
+	background: none;
+	text-decoration: none;
+}
+
+#header a:hover {
+	color: white;
+	background: none;
+	text-decoration: none;
+}
+
+/**************************************/
+/*            MAIN CONTENT            */
+/**************************************/
+body {
+background:none;
+font-family: Arial, Verdana, Tahoma;
+font-size: medium;
+color: #404040;
+border: 0;
+margin: 0;
+}
+
+h1 {
+	margin-top:2em;
+	background: transparent;
+	color: #6495ed;
+	font-size: x-large;
+	text-align: left;
+}
+
+a {
+	background: none;
+	text-decoration: none; 
+	color: #A020F0; /*purple:#A020F0*/
+}
+
+a:hover {
+	background-color: #6495ed;
+	color:white;
+}
+#page {
+	width: 1000px;
+	margin: -30px auto;
+}
+
+#content {
+	width: 800px;
+	float: left;
+	padding: 5px 10px 5px 10px;
+	margin-bottom: 20px;
+	background: none;
+	text-align: justify;
+	vertical-align: middle;
+}
+
+div.fragment { 
+	width: 98%;
+	border: 1px solid #CCCCCC;
+	background-color: #f5f5f5;
+	padding-left: 4px;
+	margin: 4px;
+	font-size:medium;
+	color:#404040;
+}
+
+.article-title a{
+	color: #6495ed;
+	font-size: 22px;
+	text-decoration: none;
+}
+
+.article-title a:hover {
+	text-decoration: underline;
+}
+
+/**************************************/
+/*             PANEL                  */
+/**************************************/
+#menu {
+	width: 150px;
+	float: right;
+	padding: 0px 10px 5px 5px;
+	margin-bottom: 20px;
+	background: none;
+	text-align: center;
+}
+
+#menu a {
+	font-weight: normal;
+	color: #404040;
+	text-decoration: none;
+}
+
+#menu a:hover {
+	color: #6495ed;
+	text-decoration: underline;
+}
+
+#menu li {
+	list-style: none;
+	/*disposition of the boxes*/
+	width: 150px;
+	height: 35px;
+	position: relative;
+	left: -37px;
+	top: 0;
+}
+
+#menu li a{
+	color: #404040;
+	padding: 6px 14px 13px 6px;
+	background: none;
+	text-decoration: none;
+	display: block;
+	width: 150px;
+	height: 10px;
+	border-top: 2px solid #404040;	
+	border-bottom: 1px solid #6495ed;	
+	border-right: 1px solid #6495ed;	
+	border-left: 2px solid #404040;	
+	-webkit-border-top-left-radius: 4px;
+	-webkit-border-top-right-radius: 4px;
+	-moz-border-radius-topleft: 4px;
+	-moz-border-radius-topright: 4px;
+	-webkit-border-bottom-left-radius: 4px ;
+	-webkit-border-bottom-right-radius: 4px;
+	-moz-border-radius-bottomleft: 4px;
+	-moz-border-radius-bottomright: 4px;
+}
+
+#menu li a:hover {
+	border-top: 2px solid black;	
+	border-bottom: 1px solid #404040;	
+	border-right: 1px solid #404040;	
+	border-left: 2px solid black;	
+	color: white;
+	background: #a0a0a0;
+	text-decoration: none;
+}
+
+#menu h1 {
+	font-size: large;
+	text-align: center;
+	color: #6495ed;
+	margin: 50px 0 -3px 19px;
+	padding: 0;
+}
+
+/*#menu li.current a
+{
+	color: #6495ed;
+	background: #b0b0b0;
+	text-decoration: none;
+}*/
+
+/**************************************/ 
+/*              FOOTERS               */ 
+/**************************************/ 
+#footer {
+	font-size: small;
+	width: 1000px;
+	text-align: center;
+	margin: 0 auto;
+	clear: both;
+	border-top: 1px solid #d6d6d6;
+	padding-top: 10px;
+	padding-bottom: 10px;
+}
+
+#footer a{
+	color: white;
+	text-decoration: none;
+	background: none;
+}
+
+#footer a:hover {
+	color: white;
+	text-decoration: none;
+	background: none;
+}
+
+#footer strong {
+	color: #A020F0;
+	text-decoration: none;
+	background: none;
+}
+
+#footer strong:hover {
+	background-color: #6495ed;
+	color:white;
+}
Index: /issm/trunk/doc/website/doc_html/wiki.html
===================================================================
--- /issm/trunk/doc/website/doc_html/wiki.html	(revision 11)
+++ /issm/trunk/doc/website/doc_html/wiki.html	(revision 11)
@@ -0,0 +1,42 @@
+<html xmlns="http://www.w3.org/1999/xhtml" xml:lang="en" lang="en">
+	<head>
+		<title>Ice Sheet System Model, Wiki</title>
+		<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
+		<meta name="author" content="ISSM Team" />
+		<meta name="copyright" content="Caltech" />
+		<meta name="description" content="ISSM website" />
+		<meta name="keywords" content="" />
+		<meta name="robots" content="all, follow" />
+		<link rel="stylesheet" href="style.css" type="text/css" media="screen" />
+	</head>
+	<body>
+		<a name="top"></a>
+		<div id="header">
+			<a href="../../index.html"><img src="headerissm.png" alt="header"></a>
+		</div>
+		<div id="page">
+			<div id="content">
+				<center><img src="at_work.gif" alt="Under Construction"></center>
+			</div>
+
+			<div id="menu">
+				<h1>Menu</h1>
+				<ul>
+					<li><a href="../../index.html" title="Home">Home</a></li>
+					<li><a href="about.html" title="About us">About us</a></li>
+					<li><a href="features.html" title="Features">Features</a></li>
+					<li><a href="documentation.html" title="Documentation">Documentation</a></li>
+					<li><a href="download.html" title="Download">Download</a></li>
+					<li><a href="installation.html" title="Installation">Installation</a></li>
+					<li><a href="wiki.html" title="Developers Site">Developers Site</a></li>
+					<li><a href="faq.html" title="FAQ">FAQ</a></li>
+				</ul>
+			</div>
+		</div>
+		<div id="footer"> 
+			<p style="float: left"><a href="http://www.nasa.gov"><img src="logo_NASA.png" alt="Logo NASA" height=50px/></a></p>
+				Copyright &copy; 2009 Caltech
+				<p style="float: right"><a href="http://www.jpl.nasa.gov"><img src="logo_JPL.png" alt="Logo JPL" height=30px/></a></p>
+			</div>
+		</body>
+	</html>
Index: /issm/trunk/doc/website/doc_m/creatematlabhtmldoc.sh
===================================================================
--- /issm/trunk/doc/website/doc_m/creatematlabhtmldoc.sh	(revision 11)
+++ /issm/trunk/doc/website/doc_m/creatematlabhtmldoc.sh	(revision 11)
@@ -0,0 +1,33 @@
+#!/bin/bash
+
+#remove previous doc
+rm -rf "$ISSM_DIR/doc/website/doc_m/matlabhtml"
+
+#copy issm_template in m2html
+cd "$ISSM_DIR/packages/m2html/install/templates"
+ln -s "$ISSM_DIR/doc/website/doc_m/template_issm" ./template_issm
+
+#go to the main directory
+cd $ISSM_DIR
+
+#launch matlab
+matlab -nodisplay << EOF
+%get ISSM_DIR, brief name
+[status,ISSM_DIR_BRIEF]=system('basename `pwd`');
+ISSM_DIR_BRIEF=ISSM_DIR_BRIEF(1:end-1); %skip the \n character
+if status~=0 | isempty(ISSM_DIR_BRIEF) | length(ISSM_DIR_BRIEF)==1,
+	error('startup error message: could not retrieve ISSM_DIR brief name');
+	end
+
+	cd ../
+
+	%Here are the subdirectories we want to go through:
+	mfiles={[ISSM_DIR_BRIEF '/src/m']};
+	%mfiles={[ISSM_DIR_BRIEF '/src/m/classes/public/plot']};
+
+	%run m2html, and dump the documentation in ISSM_DIR/doc/website/doc_m/matlabhtml
+	m2html('htmldir',[ISSM_DIR '/doc/website/doc_m/matlabhtml'],'recursive','on','source','on','syntaxHighlighting','on','globalHypertextLinks','on','global','on','template','template_issm', 'index','menu','mFiles',mfiles);
+EOF
+
+#remove soft link
+rm "$ISSM_DIR/packages/m2html/install/templates/template_issm"
Index: /issm/trunk/doc/website/doc_m/template_issm/graph.tpl
===================================================================
--- /issm/trunk/doc/website/doc_m/template_issm/graph.tpl	(revision 11)
+++ /issm/trunk/doc/website/doc_m/template_issm/graph.tpl	(revision 11)
@@ -0,0 +1,28 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
+                "http://www.w3.org/TR/REC-html40/loose.dtd">
+<html>
+<head>
+  <title>Dependency Graph for {MDIR}</title>
+  <meta name="keywords" content="dependency, graph, dependence, {MDIR}">
+  <meta name="description" content="Dependency graph for {MDIR}">
+  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
+  <meta name="generator" content="m2html &copy; 2003 Guillaume Flandin">
+  <meta name="robots" content="index, follow">
+  <link type="text/css" rel="stylesheet" href="{MASTERPATH}m2html.css">
+</head>
+<body>
+<a name="_top"></a>
+<table width="100%"><tr><td align="left"><a href="{MASTERPATH}{INDEX}"><img alt="<" border="0" src="{MASTERPATH}left.png">&nbsp;Master index</a></td>
+<td align="right"><a href="{INDEX}">Index for {MDIR}&nbsp;<img alt=">" border="0" src="{MASTERPATH}right.png"></a></td></tr></table>
+<h1>Dependency Graph for {MDIR}</h1>
+
+<center>
+<img src="{GRAPH_IMG}" usemap="#mainmap" alt="Dependency Graph for {MDIR}" border="2" style="color:#000;">  
+<map name="mainmap">
+{GRAPH_MAP}
+</map> 
+</center>
+
+<hr><address>Generated on {DATE} by <strong><a href="http://www.artefact.tk/software/matlab/m2html/">m2html</a></strong> &copy; 2003</address>
+</body>
+</html>
Index: /issm/trunk/doc/website/doc_m/template_issm/m2html.css
===================================================================
--- /issm/trunk/doc/website/doc_m/template_issm/m2html.css	(revision 11)
+++ /issm/trunk/doc/website/doc_m/template_issm/m2html.css	(revision 11)
@@ -0,0 +1,159 @@
+/* Added by Mathieu */
+/**************************************/ 
+/*              HEADER                */ 
+/**************************************/ 
+#header { 
+	width: 900px; 
+	height: 202px; 
+	background: none;
+	color:white;
+	margin: 5px auto 50px auto; 
+} 
+
+#header a{
+	color: white;
+	background: none;
+	text-decoration: none;
+}
+
+#header a:hover {
+	color: white;
+	background: none;
+	text-decoration: none;
+}
+
+/**************************************/ 
+/*              FOOTERS               */ 
+/**************************************/ 
+#footer {
+	font-size: small;
+	width: 1000px;
+	text-align: center;
+	margin: 0 auto;
+	clear: both;
+	border-top: 1px solid #d6d6d6;
+	padding-top: 10px;
+	padding-bottom: 10px;
+}
+
+#footer a{
+	color: white;
+	text-decoration: none;
+	background: none;
+}
+
+#footer a:hover {
+	color: white;
+	text-decoration: none;
+	background: none;
+}
+
+#footer strong {
+	color: #A020F0;
+	text-decoration: none;
+	background: none;
+}
+
+#footer strong:hover {
+	background-color: #6495ed;
+	color:white;
+}
+
+/**************************************/
+/*             CONTENT                */
+/**************************************/
+
+#content {
+	width: 1000px;
+	float: left;
+	padding: 5px 10px 5px 10px;
+	margin-bottom: 20px;
+	background: white;
+	text-align: justify;
+	vertical-align: middle;
+}
+
+#page {
+	width: 1000px;
+	margin: -30px auto;
+}
+
+
+body {
+	background: white;
+	font-family: Arial, Verdana, Tahoma;
+	font-size: medium;
+	color: #404040;
+	border: 0;
+	margin: 0;
+}
+
+
+/* end added by Mathieu */
+
+div.fragment { 
+	width: 98%;
+	border: 1px solid #CCCCCC;
+	background-color: #f5f5f5;
+	padding-left: 4px;
+	margin: 4px;
+	font-size:small;
+}
+
+div.box { 
+	width: 98%;
+	background-color: #f5f5f5;
+	border: 1px solid #CCCCCC;
+	color: black;
+	padding: 4px;
+}
+
+.comment {
+	color: #228B22;
+}
+.string {
+	color: #B20000;
+}
+.keyword { 
+	color: #0000FF;
+}
+
+.keywordtype { color: #604020; }
+.keywordflow { color: #e08000; }
+.preprocessor { color: #806020; }
+.stringliteral { color: #002080; }
+.charliteral { color: #008080; }
+
+a {
+	background: none;
+	text-decoration: none; 
+	color: #A020F0; /*purple:#A020F0*/
+}
+
+a:hover {
+	background-color: #6495ed;
+	color:white;
+}
+
+a.code {
+	font-weight: normal; 
+	color: #A020F0;
+}
+
+a.code:hover {
+	background-color: #6495ed;
+	color: white;
+}	
+
+h1 {
+	background: transparent;
+	color: #6495ed;
+	font-size: xx-large;
+	text-align: center;
+}
+
+h2 {
+	background: transparent;
+	color: #6495ed;
+	font-size: large;
+}
Index: /issm/trunk/doc/website/doc_m/template_issm/master.tpl
===================================================================
--- /issm/trunk/doc/website/doc_m/template_issm/master.tpl	(revision 11)
+++ /issm/trunk/doc/website/doc_m/template_issm/master.tpl	(revision 11)
@@ -0,0 +1,62 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
+"http://www.w3.org/TR/REC-html40/loose.dtd">
+<html>
+<head>
+<title>Matlab Index</title>
+<meta name="keywords" content="{DIRS}">
+<meta name="description" content="{DIRS}">
+<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
+<meta name="generator" content="m2html &copy; 2003 Guillaume Flandin">
+<meta name="robots" content="index, follow">
+<link type="text/css" rel="stylesheet" href="{MASTERPATH}m2html.css">
+</head>
+<body>
+<a name="_top"></a>
+
+
+<!-- Added by Mathieu -->
+<div id="header">
+<a href="{MASTERPATH}../../../index.html"><img src="{MASTERPATH}headerissm.png" alt="header"></a>
+</div>
+<div id="page">   
+<div id="content"> 
+
+<h1>Matlab Index</h1>
+
+<ul style="list-style-image:url({MASTERPATH}matlabicon.gif)">
+<!-- BEGIN rowdir -->
+<li><a href="{L_DIR}">{DIR}</a></li>
+<!-- END rowdir -->
+</ul>
+<!-- end by Mathieu -->
+
+
+
+
+<h2>Matlab Files found in these Directories</h2>
+<table width="100%">
+<!-- BEGIN idrow -->
+<tr>
+<!-- BEGIN idcolumn -->
+<td><a href="{L_IDNAME}" title="{T_IDNAME}">{IDNAME}</a></td>
+<!-- END idcolumn -->
+</tr>
+<!-- END idrow -->
+</table>
+
+
+
+
+<!-- Added by Mathieu -->
+</div>
+</div>
+
+<div id="footer">
+<p style="float: left"><a href="http://www.nasa.gov"><img src="{MASTERPATH}logo_NASA.png" alt="Logo NASA" height=50px/></a></p>
+Copyright &copy; 2009 Caltech, Generated on {DATE} by <a href="http://www.artefact.tk/software/matlab/m2html/"><strong>m2html</strong></a> &copy; 2003
+<p style="float: right"><a href="http://www.jpl.nasa.gov"><img src="{MASTERPATH}logo_JPL.png" alt="Logo JPL" height=30px/></a></p>
+</div>   
+<!-- End by Mathieu -->
+
+</body>
+</html>
Index: /issm/trunk/doc/website/doc_m/template_issm/mdir.tpl
===================================================================
--- /issm/trunk/doc/website/doc_m/template_issm/mdir.tpl	(revision 11)
+++ /issm/trunk/doc/website/doc_m/template_issm/mdir.tpl	(revision 11)
@@ -0,0 +1,85 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
+                "http://www.w3.org/TR/REC-html40/loose.dtd">
+<html>
+<head>
+  <title>Index for Directory {MDIR}</title>
+  <meta name="keywords" content="{MDIR}">
+  <meta name="description" content="Index for Directory {MDIR}">
+  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
+  <meta name="generator" content="m2html &copy; 2003 Guillaume Flandin">
+  <meta name="robots" content="index, follow">
+  <link type="text/css" rel="stylesheet" href="{MASTERPATH}m2html.css">
+</head>
+<body>
+<a name="_top"></a>
+
+
+<!-- Added by Mathieu -->
+<div id="header">
+<a href="{MASTERPATH}../../../index.html"><img src="{MASTERPATH}headerissm.png" alt="header"></a>
+</div>
+<div id="page">   
+<div id="content"> 
+<!-- end by Mathieu -->
+
+
+
+
+<h1>Index for {MDIR}</h1>
+
+
+<h2>Matlab files in this directory:</h2>
+<ul style="list-style-image:url({MASTERPATH}matlabicon.gif)">
+<!-- BEGIN row-m -->
+<li><a href="{L_NAME}" title="{H1LINE}">{NAME} <!-- BEGIN mexfile --> <img src="{MASTERPATH}mex.png" alt="MEX" border="0"> <!-- END mexfile --> </a></li>
+<!-- END row-m -->
+</ul>
+
+<!-- BEGIN othermatlab -->
+<h2>Other Matlab-specific files in this directory:</h2>
+<ul style="list-style-image:url({MASTERPATH}matlabicon.gif)">
+<!-- BEGIN row-other -->
+<li>{OTHERFILE}</li>
+<!-- END row-other -->
+</ul>
+<!-- END othermatlab -->
+
+<!-- BEGIN subfolder -->
+<h2>Subsequent directories:</h2>
+<ul style="list-style-image:url({MASTERPATH}matlabicon.gif)">
+<!-- BEGIN subdir -->
+<li>{SUBDIRECTORY}</li>
+<!-- END subdir -->
+</ul>
+<!-- END subfolder -->
+
+<!-- BEGIN graph -->
+<h2>Dependency Graph</h2>
+<ul style="list-style-image:url({MASTERPATH}simulinkicon.gif)">
+<li>View the <a href="{LGRAPH}">Graph</a>.</li>
+</ul>
+<!-- END graph -->
+
+<!-- BEGIN todolist -->
+<h2>TODO List</h2>
+<ul style="list-style-image:url({MASTERPATH}demoicon.gif)">
+<li>View the <a href="{LTODOLIST}">TODO list</a>.</li>
+</ul>
+<!-- END todolist -->
+
+
+
+<!-- Added by Mathieu -->
+<center><a href="{MASTERPATH}{INDEX}">&nbsp;Master index&nbsp;</a></center>
+</div>
+</div>
+
+<div id="footer">
+<p style="float: left"><a href="http://www.nasa.gov"><img src="{MASTERPATH}logo_NASA.png" alt="Logo NASA" height=50px/></a></p>
+Copyright &copy; 2009 Caltech, Generated on {DATE} by <a href="http://www.artefact.tk/software/matlab/m2html/"><strong>m2html</strong></a> &copy; 2003
+<p style="float: right"><a href="http://www.jpl.nasa.gov"><img src="{MASTERPATH}logo_JPL.png" alt="Logo JPL" height=30px/></a></p>
+</div>   
+<!-- End by Mathieu -->
+
+</body>
+</html>
Index: /issm/trunk/doc/website/doc_m/template_issm/mfile.tpl
===================================================================
--- /issm/trunk/doc/website/doc_m/template_issm/mfile.tpl	(revision 11)
+++ /issm/trunk/doc/website/doc_m/template_issm/mfile.tpl	(revision 11)
@@ -0,0 +1,84 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
+                "http://www.w3.org/TR/REC-html40/loose.dtd">
+<html>
+<head>
+  <title>Description of {NAME}</title>
+  <meta name="keywords" content="{NAME}">
+  <meta name="description" content="{H1LINE}">
+  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
+  <meta name="generator" content="m2html &copy; 2003 Guillaume Flandin">
+  <meta name="robots" content="index, follow">
+  <link type="text/css" rel="stylesheet" href="{MASTERPATH}m2html.css">
+</head>
+<body>
+<a name="_top"></a>
+
+<!-- Added by Mathieu -->
+<div id="header">
+<a href="{MASTERPATH}../../../index.html"><img src="{MASTERPATH}headerissm.png" alt="header"></a>
+</div>
+<div id="page">   
+<div id="content"> 
+<!-- end by Mathieu -->
+
+<h1>{NAME}
+<!-- BEGIN mexfile --> &nbsp;&nbsp;<img src="{MASTERPATH}{MEXTYPE}.png" alt="{PLATFORMS}" border="0" title="{PLATFORMS}"> <!-- END mexfile -->
+</h1>
+
+<div><a href="{MASTERPATH}{INDEX}">Home</a> &gt; <!-- BEGIN pathline -->  <a href="{LPATHDIR}">{PATHDIR}</a> &gt;  <!-- END pathline -->  {NAME}.m</div>
+
+<!--<table width="100%"><tr><td align="left"><a href="{MASTERPATH}{INDEX}"><img alt="<" border="0" src="{MASTERPATH}left.png">&nbsp;Master index</a></td>
+<td align="right"><a href="{INDEX}">Index for {MDIR}&nbsp;<img alt=">" border="0" src="{MASTERPATH}right.png"></a></td></tr></table>-->
+
+<h2><a name="_name"></a>Purpose</h2>
+<div class="box"><strong>{H1LINE}</strong></div>
+
+<h2><a name="_synopsis"></a>Synopsis</h2>
+<div class="box"><strong>{SYNOPSIS} <!-- BEGIN script --> This is a script file. <!-- END script --> </strong></div>
+
+<h2><a name="_description"></a>Description</h2>
+<div class="fragment"><pre class="comment">{DESCRIPTION}</pre></div>
+
+<!-- crossreference -->
+<h2><a name="_cross"></a>Cross-reference information</h2>
+This function calls:
+<ul style="list-style-image:url({MASTERPATH}matlabicon.gif)">
+<!-- BEGIN crossrefcall -->
+<li><a href="{L_NAME_CALL}" class="code" title="{SYNOP_CALL}">{NAME_CALL}</a>	{H1LINE_CALL}</li>
+<!-- END crossrefcall -->
+</ul>
+This function is called by:
+<ul style="list-style-image:url({MASTERPATH}matlabicon.gif)">
+<!-- BEGIN crossrefcalled -->
+<li><a href="{L_NAME_CALLED}" class="code" title="{SYNOP_CALLED}">{NAME_CALLED}</a>	{H1LINE_CALLED}</li>
+<!-- END crossrefcalled -->
+</ul>
+<!-- crossreference -->
+
+<!-- BEGIN subfunction -->
+<h2><a name="_subfunctions"></a>Sub-functions</h2>
+<ul style="list-style-image:url({MASTERPATH}matlabicon.gif)">
+<!-- BEGIN onesubfunction -->
+<li><a href="{L_SUB}" class="code">{SUB}</a></li>
+<!-- END onesubfunction -->
+</ul>
+<!-- END subfunction -->
+
+<!-- BEGIN source -->
+<h2><a name="_source"></a>Source code</h2>
+<div class="fragment"><pre>{SOURCECODE}</pre></div>
+<!-- END source -->
+
+<!-- Added by Mathieu -->
+<center><a href="{MASTERPATH}{INDEX}">&nbsp;Master index&nbsp;</a></center>
+</div>
+</div>
+
+<div id="footer">
+<p style="float: left"><a href="http://www.nasa.gov"><img src="{MASTERPATH}logo_NASA.png" alt="Logo NASA" height=50px/></a></p>
+Copyright &copy; 2009 Caltech, Generated on {DATE} by <a href="http://www.artefact.tk/software/matlab/m2html/"><strong>m2html</strong></a> &copy; 2003
+<p style="float: right"><a href="http://www.jpl.nasa.gov"><img src="{MASTERPATH}logo_JPL.png" alt="Logo JPL" height=30px/></a></p>
+</div>   
+<!-- End by Mathieu -->
+</body>
+</html>
Index: /issm/trunk/doc/website/doc_m/template_issm/template_issm2/graph.tpl
===================================================================
--- /issm/trunk/doc/website/doc_m/template_issm/template_issm2/graph.tpl	(revision 11)
+++ /issm/trunk/doc/website/doc_m/template_issm/template_issm2/graph.tpl	(revision 11)
@@ -0,0 +1,28 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
+                "http://www.w3.org/TR/REC-html40/loose.dtd">
+<html>
+<head>
+  <title>Dependency Graph for {MDIR}</title>
+  <meta name="keywords" content="dependency, graph, dependence, {MDIR}">
+  <meta name="description" content="Dependency graph for {MDIR}">
+  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
+  <meta name="generator" content="m2html &copy; 2003 Guillaume Flandin">
+  <meta name="robots" content="index, follow">
+  <link type="text/css" rel="stylesheet" href="{MASTERPATH}m2html.css">
+</head>
+<body>
+<a name="_top"></a>
+<table width="100%"><tr><td align="left"><a href="{MASTERPATH}{INDEX}"><img alt="<" border="0" src="{MASTERPATH}left.png">&nbsp;Master index</a></td>
+<td align="right"><a href="{INDEX}">Index for {MDIR}&nbsp;<img alt=">" border="0" src="{MASTERPATH}right.png"></a></td></tr></table>
+<h1>Dependency Graph for {MDIR}</h1>
+
+<center>
+<img src="{GRAPH_IMG}" usemap="#mainmap" alt="Dependency Graph for {MDIR}" border="2" style="color:#000;">  
+<map name="mainmap">
+{GRAPH_MAP}
+</map> 
+</center>
+
+<hr><address>Generated on {DATE} by <strong><a href="http://www.artefact.tk/software/matlab/m2html/">m2html</a></strong> &copy; 2003</address>
+</body>
+</html>
Index: /issm/trunk/doc/website/doc_m/template_issm/template_issm2/m2html.css
===================================================================
--- /issm/trunk/doc/website/doc_m/template_issm/template_issm2/m2html.css	(revision 11)
+++ /issm/trunk/doc/website/doc_m/template_issm/template_issm2/m2html.css	(revision 11)
@@ -0,0 +1,215 @@
+/* Added by Mathieu */
+/**************************************/ 
+/*              HEADER                */ 
+/**************************************/ 
+#header { 
+	width: 900px; 
+	height: 202px; 
+	background: none;
+	color:white;
+	margin: 5px auto 50px auto; 
+} 
+
+#header a{
+	color: white;
+	background: none;
+	text-decoration: none;
+}
+
+#header a:hover {
+	color: white;
+	background: none;
+	text-decoration: none;
+}
+
+/**************************************/ 
+/*              FOOTERS               */ 
+/**************************************/ 
+#footer {
+	font-size: small;
+	width: 1000px;
+	text-align: center;
+	margin: 0 auto;
+	clear: both;
+	border-top: 1px solid #d6d6d6;
+	padding-top: 10px;
+	padding-bottom: 10px;
+}
+
+#footer a{
+	color: white;
+	text-decoration: none;
+	background: none;
+}
+
+#footer a:hover {
+	color: white;
+	text-decoration: none;
+	background: none;
+}
+
+#footer strong {
+	color: #A020F0;
+	text-decoration: none;
+	background: none;
+}
+
+#footer strong:hover {
+	background-color: #6495ed;
+	color:white;
+}
+
+/**************************************/
+/*             PANEL                  */
+/**************************************/
+
+#menu {
+	width: 130px;
+	float: right;
+	padding: 5px 10px 5px 5px;
+	margin-bottom: 20px;
+	background: white;
+	text-align: center;
+}
+#menu a {
+	font-weight: normal;
+	color: #404040;
+	text-decoration: none;
+}
+#menu a:hover {
+	color: #6495ed;
+	text-decoration: underline;
+}
+
+#menu li {
+	list-style: none;
+	width: 122px;
+	height: 30px;
+	position: relative;
+	left: -37px;
+	top: 0;
+}
+
+#menu li a{
+	color: #404040;
+	padding: 6px 12px 13px 0;
+	background: /* url('../img/menu-a.gif') no-repeat 99% 50% */ #6495ed;
+	text-decoration: none;
+	display: block;
+	width: 115px;
+	height: 10px;
+	border-bottom: 1px solid #404040;
+}
+
+#menu li a:hover {
+	color: #6495ed;
+	background: /* url('../img/menu-hover.gif') no-repeat 99% 50% */ #404040;
+	text-decoration: none;
+	border-bottom: 1px solid white;
+}
+
+#menu h3 {
+	font-size: large;
+	color: #404040;
+	margin: 0;
+	padding: 0;
+}
+
+/**************************************/
+/*             CONTENT                */
+/**************************************/
+
+#content {
+	width: 1000px;
+	float: left;
+	padding: 5px 10px 5px 10px;
+	margin-bottom: 20px;
+	background: white;
+	text-align: justify;
+	vertical-align: middle;
+}
+
+#page {
+	width: 1000px;
+	margin: -30px auto;
+}
+
+
+body {
+	background: white;
+	font-family: Arial, Verdana, Tahoma;
+	font-size: medium;
+	color: #404040;
+	border: 0;
+	margin: 0;
+}
+
+
+/* end added by Mathieu */
+
+div.fragment { 
+	width: 98%;
+	border: 1px solid #CCCCCC;
+	background-color: #f5f5f5;
+	padding-left: 4px;
+	margin: 4px;
+	font-size:small;
+}
+
+div.box { 
+	width: 98%;
+	background-color: #f5f5f5;
+	border: 1px solid #CCCCCC;
+	color: black;
+	padding: 4px;
+}
+
+.comment {
+	color: #228B22;
+}
+.string {
+	color: #B20000;
+}
+.keyword { 
+	color: #0000FF;
+}
+
+.keywordtype { color: #604020; }
+.keywordflow { color: #e08000; }
+.preprocessor { color: #806020; }
+.stringliteral { color: #002080; }
+.charliteral { color: #008080; }
+
+a {
+	background: none;
+	text-decoration: none; 
+	color: #A020F0; /*purple:#A020F0*/
+}
+
+a:hover {
+	background-color: #6495ed;
+	color:white;
+}
+
+a.code {
+	font-weight: normal; 
+	color: #A020F0;
+}
+
+a.code:hover {
+	background-color: #6495ed;
+	color: white;
+}	
+
+h1 {
+	background: transparent;
+	color: #6495ed;
+	font-size: xx-large;
+	text-align: center;
+}
+
+h2 {
+	background: transparent;
+	color: #6495ed;
+	font-size: large;
+}
Index: /issm/trunk/doc/website/doc_m/template_issm/template_issm2/master.tpl
===================================================================
--- /issm/trunk/doc/website/doc_m/template_issm/template_issm2/master.tpl	(revision 11)
+++ /issm/trunk/doc/website/doc_m/template_issm/template_issm2/master.tpl	(revision 11)
@@ -0,0 +1,54 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
+                "http://www.w3.org/TR/REC-html40/loose.dtd">
+<html>
+<head>
+  <title>Matlab Index</title>
+  <meta name="keywords" content="{DIRS}">
+  <meta name="description" content="{DIRS}">
+  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
+  <meta name="generator" content="m2html &copy; 2003 Guillaume Flandin">
+  <meta name="robots" content="index, follow">
+  <link type="text/css" rel="stylesheet" href="{MASTERPATH}m2html.css">
+</head>
+<body>
+<a name="_top"></a>
+
+
+<!-- Added by Mathieu -->
+<div id="header">
+<a href="{MASTERPATH}../../../index.html"><img src="{MASTERPATH}headerissm.png" alt="header"></a>
+</div>
+<div id="page">   
+<div id="content"> 
+<!-- end by Mathieu -->
+
+
+<h1>Matlab Index</h1>
+<h2>Matlab Directories</h2>
+<ul style="list-style-image:url({MASTERPATH}matlabicon.gif)">
+<!-- BEGIN rowdir -->
+<li><a href="{L_DIR}">{DIR}</a></li>
+<!-- END rowdir -->
+</ul>
+<!-- BEGIN idrow -->
+<!-- BEGIN idcolumn -->
+<!-- {L_IDNAME} {T_IDNAME} {IDNAME} -->
+<!-- END idcolumn -->
+<!-- END idrow -->
+
+
+
+<!-- Added by Mathieu -->
+</div>
+</div>
+
+<div id="footer">
+<p style="float: left"><a href="http://www.nasa.gov"><img src="{MASTERPATH}logo_NASA.png" alt="Logo NASA" height=50px/></a></p>
+Copyright &copy; 2009 Caltech, Generated on {DATE} by <a href="http://www.artefact.tk/software/matlab/m2html/"><strong>m2html</strong></a> &copy; 2003
+<p style="float: right"><a href="http://www.jpl.nasa.gov"><img src="{MASTERPATH}logo_JPL.png" alt="Logo JPL" height=30px/></a></p>
+</div>   
+<!-- End by Mathieu -->
+
+
+</body>
+</html>
Index: /issm/trunk/doc/website/doc_m/template_issm/template_issm2/mdir.tpl
===================================================================
--- /issm/trunk/doc/website/doc_m/template_issm/template_issm2/mdir.tpl	(revision 11)
+++ /issm/trunk/doc/website/doc_m/template_issm/template_issm2/mdir.tpl	(revision 11)
@@ -0,0 +1,85 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
+                "http://www.w3.org/TR/REC-html40/loose.dtd">
+<html>
+<head>
+  <title>Index for Directory {MDIR}</title>
+  <meta name="keywords" content="{MDIR}">
+  <meta name="description" content="Index for Directory {MDIR}">
+  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
+  <meta name="generator" content="m2html &copy; 2003 Guillaume Flandin">
+  <meta name="robots" content="index, follow">
+  <link type="text/css" rel="stylesheet" href="{MASTERPATH}m2html.css">
+</head>
+<body>
+<a name="_top"></a>
+
+
+<!-- Added by Mathieu -->
+<div id="header">
+<a href="{MASTERPATH}../../../index.html"><img src="{MASTERPATH}headerissm.png" alt="header"></a>
+</div>
+<div id="page">   
+<div id="content"> 
+<!-- end by Mathieu -->
+
+
+
+
+<h1>Index for {MDIR}</h1>
+
+
+<h2>Matlab files in this directory:</h2>
+<ul style="list-style-image:url({MASTERPATH}matlabicon.gif)">
+<!-- BEGIN row-m -->
+<li><a href="{L_NAME}" title="{H1LINE}">{NAME} <!-- BEGIN mexfile --> <img src="{MASTERPATH}mex.png" alt="MEX" border="0"> <!-- END mexfile --> </a></li>
+<!-- END row-m -->
+</ul>
+
+<!-- BEGIN othermatlab -->
+<h2>Other Matlab-specific files in this directory:</h2>
+<ul style="list-style-image:url({MASTERPATH}matlabicon.gif)">
+<!-- BEGIN row-other -->
+<li>{OTHERFILE}</li>
+<!-- END row-other -->
+</ul>
+<!-- END othermatlab -->
+
+<!-- BEGIN subfolder -->
+<h2>Subsequent directories:</h2>
+<ul style="list-style-image:url({MASTERPATH}matlabicon.gif)">
+<!-- BEGIN subdir -->
+<li>{SUBDIRECTORY}</li>
+<!-- END subdir -->
+</ul>
+<!-- END subfolder -->
+
+<!-- BEGIN graph -->
+<h2>Dependency Graph</h2>
+<ul style="list-style-image:url({MASTERPATH}simulinkicon.gif)">
+<li>View the <a href="{LGRAPH}">Graph</a>.</li>
+</ul>
+<!-- END graph -->
+
+<!-- BEGIN todolist -->
+<h2>TODO List</h2>
+<ul style="list-style-image:url({MASTERPATH}demoicon.gif)">
+<li>View the <a href="{LTODOLIST}">TODO list</a>.</li>
+</ul>
+<!-- END todolist -->
+
+
+
+<!-- Added by Mathieu -->
+<center><a href="{MASTERPATH}{INDEX}">&nbsp;Master index&nbsp;</a></center>
+</div>
+</div>
+
+<div id="footer">
+<p style="float: left"><a href="http://www.nasa.gov"><img src="{MASTERPATH}logo_NASA.png" alt="Logo NASA" height=50px/></a></p>
+Copyright &copy; 2009 Caltech, Generated on {DATE} by <a href="http://www.artefact.tk/software/matlab/m2html/"><strong>m2html</strong></a> &copy; 2003
+<p style="float: right"><a href="http://www.jpl.nasa.gov"><img src="{MASTERPATH}logo_JPL.png" alt="Logo JPL" height=30px/></a></p>
+</div>   
+<!-- End by Mathieu -->
+
+</body>
+</html>
Index: /issm/trunk/doc/website/doc_m/template_issm/template_issm2/mfile.tpl
===================================================================
--- /issm/trunk/doc/website/doc_m/template_issm/template_issm2/mfile.tpl	(revision 11)
+++ /issm/trunk/doc/website/doc_m/template_issm/template_issm2/mfile.tpl	(revision 11)
@@ -0,0 +1,84 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
+                "http://www.w3.org/TR/REC-html40/loose.dtd">
+<html>
+<head>
+  <title>Description of {NAME}</title>
+  <meta name="keywords" content="{NAME}">
+  <meta name="description" content="{H1LINE}">
+  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
+  <meta name="generator" content="m2html &copy; 2003 Guillaume Flandin">
+  <meta name="robots" content="index, follow">
+  <link type="text/css" rel="stylesheet" href="{MASTERPATH}m2html.css">
+</head>
+<body>
+<a name="_top"></a>
+
+<!-- Added by Mathieu -->
+<div id="header">
+<a href="{MASTERPATH}../../../index.html"><img src="{MASTERPATH}headerissm.png" alt="header"></a>
+</div>
+<div id="page">   
+<div id="content"> 
+<!-- end by Mathieu -->
+
+<h1>{NAME}
+<!-- BEGIN mexfile --> &nbsp;&nbsp;<img src="{MASTERPATH}{MEXTYPE}.png" alt="{PLATFORMS}" border="0" title="{PLATFORMS}"> <!-- END mexfile -->
+</h1>
+
+<div><a href="{MASTERPATH}{INDEX}">Home</a> &gt; <!-- BEGIN pathline -->  <a href="{LPATHDIR}">{PATHDIR}</a> &gt;  <!-- END pathline -->  {NAME}.m</div>
+
+<!--<table width="100%"><tr><td align="left"><a href="{MASTERPATH}{INDEX}"><img alt="<" border="0" src="{MASTERPATH}left.png">&nbsp;Master index</a></td>
+<td align="right"><a href="{INDEX}">Index for {MDIR}&nbsp;<img alt=">" border="0" src="{MASTERPATH}right.png"></a></td></tr></table>-->
+
+<h2><a name="_name"></a>Purpose</h2>
+<div class="box"><strong>{H1LINE}</strong></div>
+
+<h2><a name="_synopsis"></a>Synopsis</h2>
+<div class="box"><strong>{SYNOPSIS} <!-- BEGIN script --> This is a script file. <!-- END script --> </strong></div>
+
+<h2><a name="_description"></a>Description</h2>
+<div class="fragment"><pre class="comment">{DESCRIPTION}</pre></div>
+
+<!-- crossreference -->
+<h2><a name="_cross"></a>Cross-reference information</h2>
+This function calls:
+<ul style="list-style-image:url({MASTERPATH}matlabicon.gif)">
+<!-- BEGIN crossrefcall -->
+<li><a href="{L_NAME_CALL}" class="code" title="{SYNOP_CALL}">{NAME_CALL}</a>	{H1LINE_CALL}</li>
+<!-- END crossrefcall -->
+</ul>
+This function is called by:
+<ul style="list-style-image:url({MASTERPATH}matlabicon.gif)">
+<!-- BEGIN crossrefcalled -->
+<li><a href="{L_NAME_CALLED}" class="code" title="{SYNOP_CALLED}">{NAME_CALLED}</a>	{H1LINE_CALLED}</li>
+<!-- END crossrefcalled -->
+</ul>
+<!-- crossreference -->
+
+<!-- BEGIN subfunction -->
+<h2><a name="_subfunctions"></a>Sub-functions</h2>
+<ul style="list-style-image:url({MASTERPATH}matlabicon.gif)">
+<!-- BEGIN onesubfunction -->
+<li><a href="{L_SUB}" class="code">{SUB}</a></li>
+<!-- END onesubfunction -->
+</ul>
+<!-- END subfunction -->
+
+<!-- BEGIN source -->
+<h2><a name="_source"></a>Source code</h2>
+<div class="fragment"><pre>{SOURCECODE}</pre></div>
+<!-- END source -->
+
+<!-- Added by Mathieu -->
+<center><a href="{MASTERPATH}{INDEX}">&nbsp;Master index&nbsp;</a></center>
+</div>
+</div>
+
+<div id="footer">
+<p style="float: left"><a href="http://www.nasa.gov"><img src="{MASTERPATH}logo_NASA.png" alt="Logo NASA" height=50px/></a></p>
+Copyright &copy; 2009 Caltech, Generated on {DATE} by <a href="http://www.artefact.tk/software/matlab/m2html/"><strong>m2html</strong></a> &copy; 2003
+<p style="float: right"><a href="http://www.jpl.nasa.gov"><img src="{MASTERPATH}logo_JPL.png" alt="Logo JPL" height=30px/></a></p>
+</div>   
+<!-- End by Mathieu -->
+</body>
+</html>
Index: /issm/trunk/doc/website/doc_m/template_issm/template_issm2/todo.tpl
===================================================================
--- /issm/trunk/doc/website/doc_m/template_issm/template_issm2/todo.tpl	(revision 11)
+++ /issm/trunk/doc/website/doc_m/template_issm/template_issm2/todo.tpl	(revision 11)
@@ -0,0 +1,28 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
+                "http://www.w3.org/TR/REC-html40/loose.dtd">
+<html>
+<head>
+  <title>To Do List for {MDIR}</title>
+  <meta name="keywords" content="to, do, todo, to-do, list, {MDIR}">
+  <meta name="description" content="To Do List for {MDIR}">
+  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
+  <meta name="generator" content="m2html &copy; 2003 Guillaume Flandin">
+  <meta name="robots" content="index, follow">
+  <link type="text/css" rel="stylesheet" href="{MASTERPATH}m2html.css">
+</head>
+<body>
+<a name="_top"></a>
+<table width="100%"><tr><td align="left"><a href="{MASTERPATH}{INDEX}"><img alt="<" border="0" src="{MASTERPATH}left.png">&nbsp;Master index</a></td>
+<td align="right"><a href="{INDEX}">Index for {MDIR}&nbsp;<img alt=">" border="0" src="{MASTERPATH}right.png"></a></td></tr></table>
+<h1>To Do List for {MDIR}</h1>
+<!-- BEGIN filelist -->
+<h2>{MFILE}:</h2>
+<ul>
+	<!-- BEGIN row -->
+	<li><a href="{L_NBLINE}">line {NBLINE}: </a> {COMMENT}</li>
+	<!-- END row -->
+	</ul>
+<!-- END filelist -->
+<hr><address>Generated on {DATE} by <strong><a href="http://www.artefact.tk/software/matlab/m2html/">m2html</a></strong> &copy; 2003</address>
+</body>
+</html>
Index: /issm/trunk/doc/website/doc_m/template_issm/todo.tpl
===================================================================
--- /issm/trunk/doc/website/doc_m/template_issm/todo.tpl	(revision 11)
+++ /issm/trunk/doc/website/doc_m/template_issm/todo.tpl	(revision 11)
@@ -0,0 +1,28 @@
+<!DOCTYPE HTML PUBLIC "-//W3C//DTD HTML 4.01 Transitional//EN"
+                "http://www.w3.org/TR/REC-html40/loose.dtd">
+<html>
+<head>
+  <title>To Do List for {MDIR}</title>
+  <meta name="keywords" content="to, do, todo, to-do, list, {MDIR}">
+  <meta name="description" content="To Do List for {MDIR}">
+  <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
+  <meta name="generator" content="m2html &copy; 2003 Guillaume Flandin">
+  <meta name="robots" content="index, follow">
+  <link type="text/css" rel="stylesheet" href="{MASTERPATH}m2html.css">
+</head>
+<body>
+<a name="_top"></a>
+<table width="100%"><tr><td align="left"><a href="{MASTERPATH}{INDEX}"><img alt="<" border="0" src="{MASTERPATH}left.png">&nbsp;Master index</a></td>
+<td align="right"><a href="{INDEX}">Index for {MDIR}&nbsp;<img alt=">" border="0" src="{MASTERPATH}right.png"></a></td></tr></table>
+<h1>To Do List for {MDIR}</h1>
+<!-- BEGIN filelist -->
+<h2>{MFILE}:</h2>
+<ul>
+	<!-- BEGIN row -->
+	<li><a href="{L_NBLINE}">line {NBLINE}: </a> {COMMENT}</li>
+	<!-- END row -->
+	</ul>
+<!-- END filelist -->
+<hr><address>Generated on {DATE} by <strong><a href="http://www.artefact.tk/software/matlab/m2html/">m2html</a></strong> &copy; 2003</address>
+</body>
+</html>
