Index: /issm/trunk/configs/astrid/configure.sh =================================================================== --- /issm/trunk/configs/astrid/configure.sh (revision 10081) +++ /issm/trunk/configs/astrid/configure.sh (revision 10082) @@ -11,5 +11,4 @@ --with-metis-dir=$ISSM_TIER/externalpackages/metis/install \ --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install \ - --with-petsc-version=3 \ --with-tao-dir=$ISSM_TIER/externalpackages/tao/install \ --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include \ Index: /issm/trunk/configs/astrid/configure.sh.ad =================================================================== --- /issm/trunk/configs/astrid/configure.sh.ad (revision 10081) +++ /issm/trunk/configs/astrid/configure.sh.ad (revision 10082) @@ -6,5 +6,4 @@ --with-metis-dir=$ISSM_TIER/externalpackages/metis/install \ --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install \ - --with-petsc-version=3 \ --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include \ --with-mpi-lib="-L$ISSM_TIER/externalpackages/mpich2/install/lib/ -lmpich" \ Index: /issm/trunk/configs/astrid/configure.sh.mpich1.3 =================================================================== --- /issm/trunk/configs/astrid/configure.sh.mpich1.3 (revision 10081) +++ /issm/trunk/configs/astrid/configure.sh.mpich1.3 (revision 10082) @@ -11,5 +11,4 @@ --with-metis-dir=$ISSM_TIER/externalpackages/metis/install \ --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install \ - --with-petsc-version=3 \ --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include \ --with-mpi-lib="-L$ISSM_TIER/externalpackages/mpich2/install/lib/ -lmpich -lmpl " \ Index: /issm/trunk/configs/astrid/configure.sh.petsc2 =================================================================== --- /issm/trunk/configs/astrid/configure.sh.petsc2 (revision 10081) +++ /issm/trunk/configs/astrid/configure.sh.petsc2 (revision 10082) @@ -5,3 +5,3 @@ #mpich 1.0.2 -./configure --prefix=$ISSM_TIER --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include --with-mpi-lib="-L$ISSM_TIER/externalpackages/mpich2/install/lib/ -lmpich" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH --with-fortran-lib="-L/usr/lib/gcc/x86_64-redhat-linux/4.1.1/ -lgfortran" --with-graphics-lib=/usr/lib64/libX11.so --with-cxxoptflags="-march=opteron -O2" --with-numthreads=32 --with-petsc-version=2.3 --with-scotch-dir=$ISSM_TIER/externalpackages/scotch/install --with-chaco-dir=$ISSM_TIER/externalpackages/chaco/install --enable-debugging +./configure --prefix=$ISSM_TIER --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include --with-mpi-lib="-L$ISSM_TIER/externalpackages/mpich2/install/lib/ -lmpich" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH --with-fortran-lib="-L/usr/lib/gcc/x86_64-redhat-linux/4.1.1/ -lgfortran" --with-graphics-lib=/usr/lib64/libX11.so --with-cxxoptflags="-march=opteron -O2" --with-numthreads=32 --with-scotch-dir=$ISSM_TIER/externalpackages/scotch/install --with-chaco-dir=$ISSM_TIER/externalpackages/chaco/install --enable-debugging Index: /issm/trunk/configs/astrid/configure.sh.petsc3.2 =================================================================== --- /issm/trunk/configs/astrid/configure.sh.petsc3.2 (revision 10081) +++ /issm/trunk/configs/astrid/configure.sh.petsc3.2 (revision 10082) @@ -11,5 +11,4 @@ --with-metis-dir=$ISSM_TIER/externalpackages/metis/install \ --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install \ - --with-petsc-version=3.2 \ --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include \ --with-mpi-lib="-L$ISSM_TIER/externalpackages/mpich2/install/lib/ -lmpich " \ Index: /issm/trunk/configs/castor/configure.sh =================================================================== --- /issm/trunk/configs/castor/configure.sh (revision 10081) +++ /issm/trunk/configs/castor/configure.sh (revision 10082) @@ -1,3 +1,3 @@ #!/bin/csh -./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/usr/include --with-mpi-lib="-L/usr/lib -lmpi" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-mkl-dir=/opt/intel/mkl/9.1.023/lib/64 --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-graphics-lib=/usr/X11R6/lib/libX11.so --with-petsc-version=3 +./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/usr/include --with-mpi-lib="-L/usr/lib -lmpi" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-mkl-dir=/opt/intel/mkl/9.1.023/lib/64 --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-graphics-lib=/usr/X11R6/lib/libX11.so Index: /issm/trunk/configs/castor/configure.sh.petsc2 =================================================================== --- /issm/trunk/configs/castor/configure.sh.petsc2 (revision 10081) +++ /issm/trunk/configs/castor/configure.sh.petsc2 (revision 10082) @@ -1,3 +1,3 @@ #!/bin/csh -./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/usr/include --with-mpi-lib="-L/usr/lib -lmpi" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-mkl-dir=/opt/intel/mkl/9.1.023/lib/64 --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE"--with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-graphics-lib=/usr/X11R6/lib/libX11.so --with-petsc-version=2 +./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/usr/include --with-mpi-lib="-L/usr/lib -lmpi" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-mkl-dir=/opt/intel/mkl/9.1.023/lib/64 --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE"--with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-graphics-lib=/usr/X11R6/lib/libX11.so Index: /issm/trunk/configs/cosmos/configure.sh =================================================================== --- /issm/trunk/configs/cosmos/configure.sh (revision 10081) +++ /issm/trunk/configs/cosmos/configure.sh (revision 10082) @@ -1,3 +1,3 @@ #!/bin/csh -./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/opt/mpich/gm/intel10.1/include --with-mpi-lib="-L/opt/mpich/gm/intel10.1/lib -lmpich -L/usr/local/gm/lib/ -lgm -lpthread -lrt" --with-petsc-arch=$ISSM_ARCH --with-mkl-dir=/opt/intel/mkl/10.0.5.025/lib/32/ --with-plapack-dir="-L$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-vendor=intel-linux --with-graphics-lib=/usr/X11R6/lib/libX11.so --with-petsc-version=3 +./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/opt/mpich/gm/intel10.1/include --with-mpi-lib="-L/opt/mpich/gm/intel10.1/lib -lmpich -L/usr/local/gm/lib/ -lgm -lpthread -lrt" --with-petsc-arch=$ISSM_ARCH --with-mkl-dir=/opt/intel/mkl/10.0.5.025/lib/32/ --with-plapack-dir="-L$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-vendor=intel-linux --with-graphics-lib=/usr/X11R6/lib/libX11.so Index: /issm/trunk/configs/cosmos/configure.sh.petsc2 =================================================================== --- /issm/trunk/configs/cosmos/configure.sh.petsc2 (revision 10081) +++ /issm/trunk/configs/cosmos/configure.sh.petsc2 (revision 10082) @@ -1,3 +1,3 @@ #!/bin/csh -./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/opt/mpich/gm/intel10.1/include --with-mpi-lib="-L/opt/mpich/gm/intel10.1/lib -lmpich -L/usr/local/gm/lib/ -lgm -lpthread -lrt" --with-petsc-arch=$ISSM_ARCH --with-mkl-dir=/opt/intel/mkl/10.0.5.025/lib/32/ --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-vendor=intel-linux --with-graphics-lib=/usr/X11R6/lib/libX11.so --with-petsc-version=2 +./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/opt/mpich/gm/intel10.1/include --with-mpi-lib="-L/opt/mpich/gm/intel10.1/lib -lmpich -L/usr/local/gm/lib/ -lgm -lpthread -lrt" --with-petsc-arch=$ISSM_ARCH --with-mkl-dir=/opt/intel/mkl/10.0.5.025/lib/32/ --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-vendor=intel-linux --with-graphics-lib=/usr/X11R6/lib/libX11.so Index: /issm/trunk/configs/macbookmathieu/configure.sh =================================================================== --- /issm/trunk/configs/macbookmathieu/configure.sh (revision 10081) +++ /issm/trunk/configs/macbookmathieu/configure.sh (revision 10082) @@ -6,5 +6,4 @@ --with-metis-dir=$ISSM_TIER/externalpackages/metis/install \ --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install \ - --with-petsc-version=3 \ --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include \ --with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpl.a " \ Index: /issm/trunk/configs/maceric/configure.sh =================================================================== --- /issm/trunk/configs/maceric/configure.sh (revision 10081) +++ /issm/trunk/configs/maceric/configure.sh (revision 10082) @@ -1,3 +1,3 @@ #!/bin/sh -./configure --prefix=$ISSM_TIER --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include --with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include=$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32/$ISSM_ARCH" --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-fortran-lib="/usr/local/lib/libgfortran.a" --with-math-lib="/usr/lib/libm.dylib" --with-graphics-lib="/usr/X11/lib/libX11.dylib" --with-petsc-version=3 +./configure --prefix=$ISSM_TIER --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include --with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH -lPLAPACK" --with-plapack-include=$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32/$ISSM_ARCH" --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH/ --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/$ISSM_ARCH --with-fortran-lib="/usr/local/lib/libgfortran.a" --with-math-lib="/usr/lib/libm.dylib" --with-graphics-lib="/usr/X11/lib/libX11.dylib" Index: /issm/trunk/configs/maceric/configure.sh.petsc2 =================================================================== --- /issm/trunk/configs/maceric/configure.sh.petsc2 (revision 10081) +++ /issm/trunk/configs/maceric/configure.sh.petsc2 (revision 10082) @@ -1,3 +1,3 @@ #!/bin/sh -./configure --prefix=$ISSM_TIER --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include --with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a" --with-petsc-arch=$ISSM_ARCH --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32/$ISSM_ARCH/INCLUDE" --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH --with-fortran-lib="/usr/local/lib/libgfortran.a" --with-math-lib="/usr/lib/libm.dylib" --with-graphics-lib="/usr/X11/lib/libX11.dylib" --with-petsc-version=2 +./configure --prefix=$ISSM_TIER --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include --with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a" --with-petsc-arch=$ISSM_ARCH --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32/$ISSM_ARCH/INCLUDE" --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH --with-fortran-lib="/usr/local/lib/libgfortran.a" --with-math-lib="/usr/lib/libm.dylib" --with-graphics-lib="/usr/X11/lib/libX11.dylib" Index: /issm/trunk/configs/macmathieu32/configure.sh =================================================================== --- /issm/trunk/configs/macmathieu32/configure.sh (revision 10081) +++ /issm/trunk/configs/macmathieu32/configure.sh (revision 10082) @@ -6,5 +6,4 @@ --with-metis-dir=$ISSM_TIER/externalpackages/metis/install \ --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install \ - --with-petsc-version=3 \ --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include \ --with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpl.a " \ Index: /issm/trunk/configs/macmathieu64/configure.sh =================================================================== --- /issm/trunk/configs/macmathieu64/configure.sh (revision 10081) +++ /issm/trunk/configs/macmathieu64/configure.sh (revision 10082) @@ -14,5 +14,4 @@ --with-metis-dir=$ISSM_TIER/externalpackages/metis/install \ --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install \ - --with-petsc-version=3.2 \ --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include \ --with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpl.a " \ Index: /issm/trunk/configs/murdo/configure.sh.ad =================================================================== --- /issm/trunk/configs/murdo/configure.sh.ad (revision 10081) +++ /issm/trunk/configs/murdo/configure.sh.ad (revision 10082) @@ -6,5 +6,4 @@ --with-metis-dir=$ISSM_TIER/externalpackages/metis/install \ --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install \ - --with-petsc-version=3 \ --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include \ --with-mpi-lib="-L$ISSM_TIER/externalpackages/mpich2/install/lib/ -lmpich" \ Index: /issm/trunk/configs/murdo/configure.sh.parallel =================================================================== --- /issm/trunk/configs/murdo/configure.sh.parallel (revision 10081) +++ /issm/trunk/configs/murdo/configure.sh.parallel (revision 10082) @@ -7,5 +7,4 @@ --with-metis-dir=$ISSM_TIER/externalpackages/metis/install \ --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install \ - --with-petsc-version=3 \ --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include \ --with-mpi-lib="-L$ISSM_TIER/externalpackages/mpich2/install/lib/ -lmpich" \ Index: /issm/trunk/configs/murdo/configure.sh.serial =================================================================== --- /issm/trunk/configs/murdo/configure.sh.serial (revision 10081) +++ /issm/trunk/configs/murdo/configure.sh.serial (revision 10082) @@ -7,5 +7,4 @@ --with-metis-dir=$ISSM_TIER/externalpackages/metis/install \ --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install \ - --with-petsc-version=3 \ --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include \ --with-mpi-lib="-L$ISSM_TIER/externalpackages/mpich2/install/lib/ -lmpich" \ Index: /issm/trunk/configs/ogive32/configure.sh =================================================================== --- /issm/trunk/configs/ogive32/configure.sh (revision 10081) +++ /issm/trunk/configs/ogive32/configure.sh (revision 10082) @@ -10,5 +10,4 @@ --with-metis-dir=$ISSM_TIER/externalpackages/metis/install \ --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install \ - --with-petsc-version=3 \ --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include \ --with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpl.a " \ Index: /issm/trunk/configs/ogive32/configure.sh.petsc2 =================================================================== --- /issm/trunk/configs/ogive32/configure.sh.petsc2 (revision 10081) +++ /issm/trunk/configs/ogive32/configure.sh.petsc2 (revision 10082) @@ -1,3 +1,3 @@ #!/bin/sh -./configure --prefix=$ISSM_TIER --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include --with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a" --with-petsc-arch=$ISSM_ARCH --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32/$ISSM_ARCH/INCLUDE" --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH --with-fortran-lib="/usr/local/gfortran/lib/libgfortran.a" --with-math-lib="/usr/lib/libm.dylib" --with-graphics-lib="/usr/X11/lib/libX11.dylib" --with-petsc-version=2 +./configure --prefix=$ISSM_TIER --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include --with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a" --with-petsc-arch=$ISSM_ARCH --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/fblaslapack/$ISSM_ARCH --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32/$ISSM_ARCH/INCLUDE" --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH --with-fortran-lib="/usr/local/gfortran/lib/libgfortran.a" --with-math-lib="/usr/lib/libm.dylib" --with-graphics-lib="/usr/X11/lib/libX11.dylib" Index: /issm/trunk/configs/ogive64/configure.sh =================================================================== --- /issm/trunk/configs/ogive64/configure.sh (revision 10081) +++ /issm/trunk/configs/ogive64/configure.sh (revision 10082) @@ -14,5 +14,4 @@ --with-metis-dir=$ISSM_TIER/externalpackages/metis/install \ --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install \ - --with-petsc-version=3.2 \ --with-mpi-include=$ISSM_TIER/externalpackages/mpich2/install/include \ --with-mpi-lib=" $ISSM_TIER/externalpackages/mpich2/install/lib/libpmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpich.a $ISSM_TIER/externalpackages/mpich2/install/lib/libmpl.a " \ Index: /issm/trunk/configs/pleiades/configure.sh =================================================================== --- /issm/trunk/configs/pleiades/configure.sh (revision 10081) +++ /issm/trunk/configs/pleiades/configure.sh (revision 10082) @@ -20,3 +20,2 @@ --with-cxxoptflags="-O3 -xS" \ --with-vendor=intel-pleiades \ - --with-petsc-version=3 Index: /issm/trunk/configs/pleiades/configure.sh.petsc2 =================================================================== --- /issm/trunk/configs/pleiades/configure.sh.petsc2 (revision 10081) +++ /issm/trunk/configs/pleiades/configure.sh.petsc2 (revision 10082) @@ -1,3 +1,3 @@ #!/bin/csh -./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/nasa/sgi/mpt/1.23.nas/includ --with-mpi-lib="-L/nasa/sgi/mpt/1.23.nas/lib64/ -lmpi -lpthread -lgfortran" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-mkl-dir=/nasa/intel/mkl/10.0.011/lib/64/ --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-graphics-lib=/usr/X11/lib64/libX11.so --with-cxxoptflags="-O3 -xS" --with-vendor=intel-pleiades --with-petsc-version=2 +./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/nasa/sgi/mpt/1.23.nas/includ --with-mpi-lib="-L/nasa/sgi/mpt/1.23.nas/lib64/ -lmpi -lpthread -lgfortran" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-mkl-dir=/nasa/intel/mkl/10.0.011/lib/64/ --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/MUMPS_4.6.3/$ISSM_ARCH/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-blacs-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/blacs-dev/$ISSM_ARCH --with-graphics-lib=/usr/X11/lib64/libX11.so --with-cxxoptflags="-O3 -xS" --with-vendor=intel-pleiades Index: /issm/trunk/configs/pleiades/configure.sh.petsc3.1 =================================================================== --- /issm/trunk/configs/pleiades/configure.sh.petsc3.1 (revision 10081) +++ /issm/trunk/configs/pleiades/configure.sh.petsc3.1 (revision 10082) @@ -1,3 +1,3 @@ #!/bin/csh -./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/nasa/sgi/mpt/1.23.nas/includ --with-mpi-lib="-L/nasa/sgi/mpt/1.23.nas/lib64/ -lmpi -lpthread" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-mkl-dir=/nasa/intel/mkl/10.0.011/lib/64/ --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-graphics-lib=/usr/lib64/libX11.so --with-cxxoptflags="-O3 -xS" --with-vendor=intel-pleiades --with-petsc-version=3 --with-hypre-dir=$ISSM_TIER/externalpackages/petsc/install --with-ml-dir=$ISSM_TIER/externalpackages/petsc/install +./configure --prefix=$ISSM_TIER --with-serial=no --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-mpi-include=/nasa/sgi/mpt/1.23.nas/includ --with-mpi-lib="-L/nasa/sgi/mpt/1.23.nas/lib64/ -lmpi -lpthread" --with-petsc-arch=$ISSM_ARCH --with-dakota-dir=$ISSM_TIER/externalpackages/dakota/install --with-mkl-dir=/nasa/intel/mkl/10.0.011/lib/64/ --with-plapack-lib="-L$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH -lPLAPACK" --with-plapack-include="-I$ISSM_TIER/externalpackages/petsc/install/externalpackages/PLAPACKR32-hg/$ISSM_ARCH/INCLUDE" --with-mumps-dir=$ISSM_TIER/externalpackages/petsc/install/ --with-scalapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/SCALAPACK/$ISSM_ARCH/ --with-graphics-lib=/usr/lib64/libX11.so --with-cxxoptflags="-O3 -xS" --with-vendor=intel-pleiades --with-hypre-dir=$ISSM_TIER/externalpackages/petsc/install --with-ml-dir=$ISSM_TIER/externalpackages/petsc/install Index: /issm/trunk/configs/wineric/configure.sh =================================================================== --- /issm/trunk/configs/wineric/configure.sh (revision 10081) +++ /issm/trunk/configs/wineric/configure.sh (revision 10082) @@ -4,3 +4,3 @@ #get configure.sh to pick up the intel compiler -./configure --prefix=$ISSM_TIER --with-parallel=no --with-vendor=intel --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-petsc-arch=$ISSM_ARCH --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/f2cblaslapack/$ISSM_ARCH --with-petsc-version=3 +./configure --prefix=$ISSM_TIER --with-parallel=no --with-vendor=intel --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-petsc-arch=$ISSM_ARCH --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/f2cblaslapack/$ISSM_ARCH Index: /issm/trunk/configs/wineric/configure.sh.petsc2 =================================================================== --- /issm/trunk/configs/wineric/configure.sh.petsc2 (revision 10081) +++ /issm/trunk/configs/wineric/configure.sh.petsc2 (revision 10082) @@ -4,3 +4,3 @@ #get configure.sh to pick up the intel compiler -./configure --prefix=$ISSM_TIER --with-parallel=no --with-vendor=intel --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-petsc-arch=$ISSM_ARCH --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/f2cblaslapack/$ISSM_ARCH --with-petsc-version=2 +./configure --prefix=$ISSM_TIER --with-parallel=no --with-vendor=intel --with-matlab-dir=$MATLAB_DIR --with-triangle-dir=$ISSM_TIER/externalpackages/triangle/install --with-metis-dir=$ISSM_TIER/externalpackages/metis/install --with-petsc-dir=$ISSM_TIER/externalpackages/petsc/install --with-petsc-arch=$ISSM_ARCH --with-blas-lapack-dir=$ISSM_TIER/externalpackages/petsc/install/externalpackages/f2cblaslapack/$ISSM_ARCH