source: issm/trunk/test/NightlyRun/runme.m@ 22758

Last change on this file since 22758 was 22758, checked in by Mathieu Morlighem, 7 years ago

merged trunk-jpl and trunk for revision 22757
  • Property svn:executable set to *
File size: 9.4 KB
Line 
1function varargout=runme(varargin)
2%RUNME - test deck for ISSM nightly runs
3%
4% In a test deck directory (tests/Vertification/NightlyRun for example)
5% The following command will launch all the existing tests:
6% >> runme
7% To run the tests 101 and 102:
8% >> runme('id',[101 102])
9% etc...
10%
11% Available options:
12% 'id' followed by the list of ids requested
13% 'exclude' ids to be excluded from the test
14% 'benchmark' 'all' (all of them)
15% 'nightly' (nightly run)
16% 'ismip' : validation of ismip-hom tests
17% 'eismint': validation of eismint tests
18% 'thermal': validation of thermal tests
19% 'mesh' : validation of mesh tests
20% 'adolc' : validation of adolc tests
21% 'slr' : validation of slr tests
22% 'qmu' : validation of dakota tests
23% ...
24% 'procedure' 'check' : run the test (default)
25% 'update': update the archive
26% 'valgrind': check for memory leaks (default value of md.debug.valgrind needs to be changed manually)
27% 'stoponerror' 1 or 0
28%
29% Usage:
30% runme(varargin);
31%
32% Examples:
33% runme;
34% runme('exclude',101);
35% runme('id',102,'procedure','update');
36
37% runme('procedure','valgrind','stoponerror',1,'exclude','IdFromString('Dak'));
38
39%Check inputs
40% {{{
41if nargout>1
42 help runme
43 error('runme error message: bad usage');
44end
45
46%recover options
47options=pairoptions(varargin{:});
48% }}}
49
50%Process options
51%GET benchmark {{{
52benchmark=getfieldvalue(options,'benchmark','nightly');
53if ~ismember(benchmark,{'all','nightly','ismip','eismint','thermal','mesh','validation','tranforcing','adolc','slr','qmu'})
54 disp('runme warning: benchmark not supported, defaulting to test ''nightly''')
55 benchmark='nightly';
56end
57% }}}
58%GET procedure {{{
59procedure=getfieldvalue(options,'procedure','check');
60if ~ismember(procedure,{'check','update','valgrind'})
61 disp('runme warning: procedure not supported, defaulting to test ''check''')
62 procedure='check';
63end
64% }}}
65%GET output {{{
66output=getfieldvalue(options,'output','none');
67if ~ismember(output,{'nightly','none'})
68 disp('runme warning: output not supported, defaulting to test ''none''')
69 output='none';
70end
71% }}}
72%GET RANK and NUMPROCS for multithreaded runs {{{
73rank=getfieldvalue(options,'rank',1);
74numprocs=getfieldvalue(options,'numprocs',1);
75if (numprocs<rank), numprocs=1; end
76% }}}
77%GET ids {{{
78flist=dir;%use dir, as it seems to act OS independent
79list_ids=[];
80for i=1:numel(flist),
81 if ( strncmp(flist(i).name,'test',4) &... %File name must start with 'test'
82 strncmp(fliplr(flist(i).name),fliplr('.m'),2)&... %File name must end by '.m'
83 ~strcmp(flist(i).name,'test.m')) %File name must be different than 'test.m'
84 id=str2num(flist(i).name(5:end-2));
85 if isempty(id),
86 disp(['WARNING: ignore file ' flist(i).name ]);
87 else
88 list_ids(end+1)=eval(flist(i).name(5:end-2)); %Keep test id only (skip 'test' and '.m')
89 end
90 end
91end
92[i1,i2]=parallelrange(rank,numprocs,length(list_ids)); %Get tests for this cpu only
93list_ids=list_ids(i1:i2);
94
95test_ids=getfieldvalue(options,'id',list_ids);
96test_ids=intersect(test_ids,list_ids);
97% }}}
98%GET exclude {{{
99exclude_ids=getfieldvalue(options,'exclude',[]);
100exclude_ids=[exclude_ids];
101pos=find(ismember(test_ids,exclude_ids));
102test_ids(pos)=[];
103% }}}
104%Process Ids according to benchmarks{{{
105if strcmpi(benchmark,'nightly'),
106 test_ids=intersect(test_ids,[1:999]);
107elseif strcmpi(benchmark,'validation'),
108 test_ids=intersect(test_ids,[1001:1999]);
109elseif strcmpi(benchmark,'ismip'),
110 test_ids=intersect(test_ids,[1101:1199]);
111elseif strcmpi(benchmark,'eismint'),
112 test_ids=intersect(test_ids,[1201:1299]);
113elseif strcmpi(benchmark,'thermal'),
114 test_ids=intersect(test_ids,[1301:1399]);
115elseif strcmpi(benchmark,'mesh'),
116 test_ids=intersect(test_ids,[1401:1499]);
117elseif strcmpi(benchmark,'tranforcing'),
118 test_ids=intersect(test_ids,[1501:1502]);
119elseif strcmpi(benchmark,'referential'),
120 test_ids=intersect(test_ids,[1601:1602]);
121elseif strcmpi(benchmark,'slr'),
122 test_ids=intersect(test_ids,[2001:2500]);
123elseif strcmpi(benchmark,'adolc'),
124 test_ids=intersect(test_ids,[3001:3200]);
125elseif strcmpi(benchmark,'qmu'),
126 test_ids=intersect(test_ids,[218 234 235 412:414 417 418 420]);
127end
128% }}}
129
130%Loop over tests and launch sequence
131root=pwd;
132for id=test_ids,
133 disp(sprintf('%s%i%s','----------------starting:',id,'-----------------------'));
134 try,
135 %Execute test
136 cd(root);
137 id_string='N/A';
138 id_string=IdToName(id);
139 run(['test' num2str(id)]);
140
141 %UPDATE ARCHIVE?
142 archive_name=['Archive' num2str(id) ];
143 if strcmpi(procedure,'update'),
144 delete(['../Archives/' archive_name '.arch'])
145 for k=1:length(field_names),
146 field=field_values{k};
147 archwrite(['../Archives/' archive_name '.arch'],[archive_name '_field' num2str(k)], field);
148 end
149 disp(sprintf(['File ./../Archives/' archive_name '.arch saved\n']));
150
151 %CHECK for memory leaks?
152 elseif strcmpi(procedure,'valgrind'),
153 fields = fieldnames(md.results);
154 for i=1:numel(fields)
155 if ~isfield(md.results.(fields{i}),'errlog'),
156 disp(['Skipping ' fields{i}]);
157 continue;
158 else
159 disp(['Extracting results of ' fields{i}]);
160 end
161 results = md.results.(fields{i});
162 errlog = cellstr(results(1).errlog);
163
164 %Check leaks
165 lines = strfind(errlog,'definitely lost:');
166 lines = find(~cellfun(@isempty,lines));
167 leaks = 0;
168 for j=1:numel(lines)
169 Line = errlog(lines(j));
170 Numbers = sscanf(Line{1},'==%i== definitely lost: %s bytes in %i blocks',[1 Inf]);
171 leaks = leaks + str2num(strrep(char(Numbers(2:end-1)),',',''));
172 end
173 %Check conditional jumps
174 lines = strfind(errlog,'Conditional jump or move depends on uninitialised value');
175 lines = find(~cellfun(@isempty,lines));
176 jumps = numel(lines);
177 %Check invalid read/write
178 lines = strfind(errlog,'Invalid');
179 lines = find(~cellfun(@isempty,lines));
180 inval = numel(lines);
181 if leaks==0,
182 disp(sprintf(['SUCCESS difference: 0 < 0 test id: %i test name: %s field: valgrind mem. leaks'],id,id_string));
183 else
184 disp(sprintf(['ERROR difference: %i > 0 test id: %i test name: %s field: valgrind mem. leaks'],leaks,id,id_string));
185 disp('STOP');
186 return;
187 end
188 if jumps==0,
189 disp(sprintf(['SUCCESS difference: 0 < 0 test id: %i test name: %s field: valgrind cond. jumps'],id,id_string));
190 else
191 disp(sprintf(['ERROR difference: %i > 0 test id: %i test name: %s field: valgrind cond. jumps'],jumps,id,id_string));
192 disp('STOP');
193 return;
194 end
195 if inval==0,
196 disp(sprintf(['SUCCESS difference: 0 < 0 test id: %i test name: %s field: valgrind invalid read/write'],id,id_string));
197 else
198 disp(sprintf(['ERROR difference: %i > 0 test id: %i test name: %s field: valgrind invalid read/write'],inval,id,id_string));
199 disp('STOP');
200 return;
201 end
202 end
203
204 %ELSE: CHECK TEST
205 else,
206 for k=1:length(field_names),
207
208 try,
209 %Get field and tolerance
210 field=field_values{k};
211 fieldname=field_names{k};
212 tolerance=field_tolerances{k};
213
214 %compare to archive
215 %our output is in the correct order (n,1) or (1,1), so we do not need to transpose again
216 archive_cell=archread(['../Archives/' archive_name '.arch'],[archive_name '_field' num2str(k)]);
217 archive=archive_cell{1};
218 error_diff=full(max(abs(archive(:)-field(:)))/(max(abs(archive(:)))+eps));
219
220 %disp test result
221 if (error_diff>tolerance | isnan(error_diff));
222 disp(sprintf(['ERROR difference: %-7.2g > %7.2g test id: %i test name: %s field: %s'],...
223 error_diff,tolerance,id,id_string,fieldname));
224 if(getfieldvalue(options,'stoponerror',0)), disp('STOP'); return; end
225 else
226 disp(sprintf(['SUCCESS difference: %-7.2g < %7.2g test id: %i test name: %s field: %s'],...
227 error_diff,tolerance,id,id_string,fieldname));
228 end
229
230 catch me2
231
232 %something went wrong, print failure message:
233 message=getReport(me2);
234 fprintf('%s',message);
235 if strcmpi(output,'nightly')
236 fid=fopen([issmdir() '/nightlylog/matlaberror.log'], 'at');
237 fprintf(fid,'%s',message);
238 fprintf(fid,'\n------------------------------------------------------------------\n');
239 fclose(fid);
240 disp(sprintf(['FAILURE difference: N/A test id: %i test name: %s field: %s'],id,id_string,fieldname));
241 else
242 disp(sprintf(['FAILURE difference: N/A test id: %i test name: %s field: %s'],id,id_string,fieldname));
243 fprintf('%s',message);
244 if(getfieldvalue(options,'stoponerror',0)), disp('STOP'); return; end
245 end
246 continue;
247 end
248 end
249 end
250 catch me,
251
252 %something went wrong, print failure message:
253 message=getReport(me);
254 fprintf('%s',message);
255 if strcmpi(output,'nightly')
256 fid=fopen([issmdir() '/nightlylog/matlaberror.log'], 'at');
257 fprintf(fid,'%s',message);
258 fprintf(fid,'\n------------------------------------------------------------------\n');
259 fclose(fid);
260 disp(sprintf(['FAILURE difference: N/A test id: %i test name: %s field: %s'],id,id_string,'N/A'));
261 else
262 disp(sprintf(['FAILURE difference: N/A test id: %i test name: %s field: %s'],id,id_string,'N/A'));
263 rethrow(me);
264 if(getfieldvalue(options,'stoponerror',0)), disp('STOP'); return; end
265 end
266 end
267 disp(sprintf('%s%i%s','----------------finished:',id,'-----------------------'));
268end
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