import numpy import os from pairoptions import * from MatlabFuncs import * def checkfield(md,fieldname,*args): """ CHECKFIELD - check field consistency Used to check model consistency. Available options: - NaN: 1 if check that there is no NaN - size: [lines cols], NaN for non checked dimensions - >: greater than provided value - >=: greater or equal to provided value - <: smallerthan provided value - <=: smaller or equal to provided value - < vec: smallerthan provided values on each vertex - forcing: 1 if check forcing consistency (size and time) - values: cell of strings or vector of acceptable values - numel: list of acceptable number of elements - cell: 1 if check that is cell - empty: 1 if check that non empty - message: overloaded error message Usage: md = checkfield(md,fieldname,options); Example: md = checkfield(md,'mesh.elementonbed','size',[md.mesh.numberofelements 1],'values',[0 1]); """ #get options options=pairoptions(*args) #get field from model # field=getattr(md,fieldname) exec("field=md.%s" % fieldname) if isinstance(field,(bool,int,long,float)): field=numpy.array([field]) #check empty if options.exist('empty'): if not field: md = md.checkmessage(options.getfieldvalue('message',\ "field '%s' is empty" % fieldname)) #Check size if options.exist('size'): fieldsize=options.getfieldvalue('size') if len(fieldsize) == 1: if numpy.isnan(fieldsize[0]): pass elif not numpy.size(field,0)==fieldsize[0]: md = md.checkmessage(options.getfieldvalue('message',\ "field '%s' size should be %d" % (fieldname,fieldsize[0]))) elif len(fieldsize) == 2: if numpy.isnan(fieldsize[0]): if not numpy.size(field,1)==fieldsize[1]: md = md.checkmessage(options.getfieldvalue('message',\ "field '%s' should have %d columns" % (fieldname,fieldsize[1]))) elif numpy.isnan(fieldsize[1]): if not numpy.size(field,0)==fieldsize[0]: md = md.checkmessage(options.getfieldvalue('message',\ "field '%s' should have %d lines" % (fieldname,fieldsize[0]))) else: if (not numpy.size(field,0)==fieldsize[0]) or (not numpy.size(field,1)==fieldsize[1]): md = md.checkmessage(options.getfieldvalue('message',\ "field '%s' size should be %d x %d" % (fieldname,fieldsize[0],fieldsize[1]))) #Check numel if options.exist('numel'): fieldnumel=options.getfieldvalue('numel') if numpy.size(field) not in fieldnumel: if len(fieldnumel)==1: md = md.checkmessage(options.getfieldvalue('message',\ "field '%s' size should be %d" % (fieldname,fieldnumel))) elif len(fieldnumel)==2: md = md.checkmessage(options.getfieldvalue('message',\ "field '%s' size should be %d or %d" % (fieldname,fieldnumel[0],fieldnumel[1]))) else: md = md.checkmessage(options.getfieldvalue('message',\ "field '%s' size should be %s" % (fieldname,fieldnumel))) #check NaN if options.getfieldvalue('NaN',0): if numpy.any(numpy.isnan(field)): md = md.checkmessage(options.getfieldvalue('message',\ "NaN values found in field '%s'" % fieldname)) #check cell if options.getfieldvalue('cell',0): if not isinstance(field,(tuple,list,dict)): md = md.checkmessage(options.getfieldvalue('message',\ "field '%s' should be a cell" % fieldname)) #check values if options.exist('values'): fieldvalues=options.getfieldvalue('values') if False in ismember(field,fieldvalues): if len(fieldvalues)==1: md = md.checkmessage(options.getfieldvalue('message',\ "field '%s' value should be '%s'" % (fieldname,fieldvalues[0]))) elif len(fieldvalues)==2: md = md.checkmessage(options.getfieldvalue('message',\ "field '%s' values should be '%s' or '%s'" % (fieldname,fieldvalues[0],fieldvalues[1]))) else: md = md.checkmessage(options.getfieldvalue('message',\ "field '%s' should have values in %s" % (fieldname,fieldvalues))) #check greater if options.exist('>='): lowerbound=options.getfieldvalue('>=') if numpy.any(field'): lowerbound=options.getfieldvalue('>') if numpy.any(field<=lowerbound): md = md.checkmessage(options.getfieldvalue('message',\ "field '%s' should have values above %d" % (fieldname,lowerbound))) #check smaller if options.exist('<='): upperbound=options.getfieldvalue('<=') if numpy.any(field>upperbound): md = md.checkmessage(options.getfieldvalue('message',\ "field '%s' should have values below %d" % (fieldname,upperbound))) if options.exist('<'): upperbound=options.getfieldvalue('<') if numpy.any(field>=upperbound): md = md.checkmessage(options.getfieldvalue('message',\ "field '%s' should have values below %d" % (fieldname,upperbound))) #check file if options.getfieldvalue('file',0): if not os.path.exists(field): md = md.checkmessage("file provided in '%s': '%s' does not exist" % (fieldname,field)) #Check forcings (size and times) if options.getfieldvalue('forcing',0): if numpy.size(field,0)==md.mesh.numberofvertices: if numpy.ndim(field)>1 and not numpy.size(field,1)==1: md = md.checkmessage(options.getfieldvalue('message',\ "field '%s' should have only one column as there are md.mesh.numberofvertices lines" % fieldname)) elif numpy.size(field,0)==md.mesh.numberofvertices+1: if not all(field[-1,:]==numpy.sort(field[-1,:])): md = md.checkmessage(options.getfieldvalue('message',\ "field '%s' columns should be sorted chronologically" % fieldname)) if any(field[-1,0:-1]==field[-1,1:]): md = md.checkmessage(options.getfieldvalue('message',\ "field '%s' columns must not contain duplicate timesteps" % fieldname)) else: md = md.checkmessage(options.getfieldvalue('message',\ "field '%s' should have md.mesh.numberofvertices or md.mesh.numberofvertices+1 lines" % fieldname)) return md