source: issm/trunk/src/m/classes/clusters/maceric.m@ 8188

%ERICMAC class definition
%
%   Usage:
%      cluster=ericmac();
%      cluster=ericmac('np',3);
%      cluster=ericmac('np',3,'login','username');

classdef ericmac
    properties (SetAccess=public) 
                 % {{{1
                 name='ericmac'
                 login='larour';
                 np=3;
                 port=0;
                 codepath=[issmtier() '/bin'];
                 executionpath=[issmdir() '/execution'];
                 valgrind=[issmtier() '/externalpackages/valgrind/install/bin/valgrind'];
                 valgrindlib=[issmtier() '/externalpackages/valgrind/install/lib/libmpidebug.so'];
                 valgrindsup=[issmtier() '/externalpackages/valgrind/issm.supp'];
                 %}}}
    end
    methods
                 function cluster=ericmac(varargin) % {{{1
                         options=pairoptions(varargin{:});
                         for i=1:size(options.list,1),
                                 fieldname=options.list{i,1};
                                 fieldvalue=options.list{i,2};
                                 if ismember(fieldname,properties(ericmac)),
                                         cluster.(fieldname)=fieldvalue;
                                 else
                                         disp(['''' fieldname ''' is not a property of cluster ericmac']);
                                 end
                         end
                 end
                 %}}}
                 function disp(cluster) % {{{1
                         %  display the object
                         disp(sprintf('class ''%s'' object ''%s'' = ',class(cluster),inputname(1)));
                         disp(sprintf('    name: %s',cluster.name));
                         disp(sprintf('    login: %s',cluster.login));
                         disp(sprintf('    np: %i',cluster.np));
                         disp(sprintf('    port: %i',cluster.port));
                         disp(sprintf('    codepath: %s',cluster.codepath));
                         disp(sprintf('    executionpath: %s',cluster.executionpath));
                         disp(sprintf('    valgrind: %s',cluster.valgrind));
                         disp(sprintf('    valgrindlib: %s',cluster.valgrindlib));
                         disp(sprintf('    valgrindsup: %s',cluster.valgrindsup));
                 end
                 %}}}
                 function IsConsistent(cluster) % {{{1
                         if cluster.np>4,
                                 error('IsConsistent error message: number of processors should be less than 4!');
                         end
                         if isnan(cluster.np),
                                 error('IsConsistent error message: number of processors should not be NaN!');
                         end
                 end
                 %}}}
                 function BuildQueueScript(cluster,md) % {{{1

                         %retrieve parameters 
                         modelname=md.name; 
                         solution_type=md.solution_type; 
                         mem_debug=md.mem_debug;

                         %open file for writing: 
                         fid=fopen([modelname '.queue'],'w');

                         %write instructions for launching a job on the cluster
                         fprintf(fid,'#!/bin/sh\n');
                         if mem_debug==0,
                                 fprintf(fid,'mpirun -np %i %s/issm.exe %s %s %s.bin %s.petsc %s.outbin %s.lock  2> %s.errlog >%s.outlog & ',cluster.np,cluster.codepath,EnumToString(solution_type),cluster.executionpath,modelname,modelname,modelname,modelname,modelname,modelname);
                         else
                                 %fprintf(fid,'LD_PRELOAD=%s mpirun -np %i %s --leak-check=full --gen-suppressions=all --suppressions=%s %s/issm.exe %s %s %s.bin %s.petsc %s.outbin %s.lock  2> %s.errlog >%s.outlog & ',cluster.valgrindlib,cluster.np,cluster.valgrind,cluster.valgrindsup,cluster.codepath,EnumToString(solution_type),cluster.executionpath,modelname,modelname,modelname,modelname,modelname,modelname);
                                 fprintf(fid,'LD_PRELOAD=%s mpirun -np %i %s --leak-check=full --suppressions=%s %s/issm.exe %s %s %s.bin %s.petsc %s.outbin %s.lock  2> %s.errlog >%s.outlog & ',cluster.valgrindlib,cluster.np,cluster.valgrind,cluster.valgrindsup, cluster.codepath,EnumToString(solution_type),cluster.executionpath,modelname,modelname,modelname,modelname,modelname,modelname);
                         end

                         %close file
                         fclose(fid);

                 end
                 %}}}
                 function LaunchQueueJob(cluster,md,options)% {{{1
                         
                         %lauch command, to be executed via ssh
                         launchcommand=['cd ' cluster.executionpath ' && rm -rf ./' md.runtimename ' && mkdir ' md.runtimename ...
                                        ' && cd ' md.runtimename ' && mv ../' md.runtimename '.tar.gz ./ && tar -zxf ' md.runtimename '.tar.gz  && source  ' md.name '.queue '];

                        if ~strcmpi(options.batch,'yes'),
                                
                                %compress the files into one zip.
                                compressstring=['tar -zcf ' md.runtimename '.tar.gz ' md.name '.bin ' md.name '.queue '  md.name '.petsc '];
                                if md.qmu_analysis,
                                        compressstring=[compressstring md.name '.qmu.in'];
                                end
                                system(compressstring);
                                
                                disp('uploading input file and queueing script');
                                issmscpout(md.cluster.name,md.cluster.executionpath,md.cluster.login,md.cluster.port,{[md.runtimename '.tar.gz']});
                                
                                disp('launching solution sequence on remote cluster');
                                issmssh(md.cluster.name,md.cluster.login,md.cluster.port,launchcommand);

                        else
                                disp('batch mode requested: not launching job interactively');
                                disp('launch solution sequence on remote cluster by hand');
                        end

                 end
                 %}}}
                 function Download(cluster,md)% {{{1

                        %some check
                        if isempty(md.runtimename),
                                error('pfe Download error message: supply runtime name for results to be loaded!');
                        end

                        %Figure out the  directory where all the files are in: 
                        directory=[cluster.executionpath '/' md.runtimename '/'];

                        %What packages are we picking up from remote cluster
                        packages={[md.name '.outlog'],[md.name '.errlog']};
                        if md.qmu_analysis,
                                packages{end+1}=[md.name '.qmu.err'];
                                packages{end+1}=[md.name '.qmu.out'];
                                if isfield(md.qmu_params,'tabular_graphics_data'),
                                        if md.qmu_params.tabular_graphics_data==true,
                                                packages{end+1}='dakota_tabular.dat'; 
                                        end
                                end
                        else
                                packages{end+1}=[md.name '.outbin'];
                        end

                        %copy files from cluster to present directory
                        issmscpin(cluster.name, cluster.login, cluster.port, directory, packages);
                end %}}}
        end
end