/*!\file:  diagnostic.cpp
 * \brief: diagnostic solution
 */ 

#ifdef HAVE_CONFIG_H
	#include "config.h"
#else
#error "Cannot compile with HAVE_CONFIG_H symbol! run configure first!"
#endif

#include "../objects/objects.h"
#include "../shared/shared.h"
#include "../DataSet/DataSet.h"
#include "../EnumDefinitions/EnumDefinitions.h"
#include "../include/include.h"
#include "../modules.h"
#include "./solutions.h"

int main(int argc,char* *argv){
	
	/*I/O: */
	FILE* fid=NULL;
	char* inputfilename=NULL;
	char* outputfilename=NULL;
	char* lockname=NULL;
	bool  qmu_analysis=false;
	bool  control_analysis=false;

	/*Model: */
	Model* model=NULL;

	/*Results: */
	DataSet* results=NULL;
	DataSet* processed_results=NULL;
	Result*  result=NULL;
	
	bool waitonlock=false;
	
	/*time*/
	double   start, finish;
	double   start_core, finish_core;
	double   start_init, finish_init;

	MODULEBOOT();

	#if !defined(_PARALLEL_) || (defined(_PARALLEL_) && !defined(_HAVE_PETSC_))
	ISSMERROR(" parallel executable was compiled without support of parallel libraries!");
	#endif

	/*Initialize Petsc and get start time*/
	PetscInitialize(&argc,&argv,(char *)0,"");  
	MPI_Barrier(MPI_COMM_WORLD); start=MPI_Wtime();

	/*Size and rank: */
	MPI_Comm_rank(MPI_COMM_WORLD,&my_rank);  
	MPI_Comm_size(MPI_COMM_WORLD,&num_procs); 

	_printf_("recover , input file name and output file name:\n");
	inputfilename=argv[2];
	outputfilename=argv[3];
	lockname=argv[4];

	/*Initialize model structure: */
	MPI_Barrier(MPI_COMM_WORLD); start_init=MPI_Wtime();
	model=new Model();

	/*Open handle to data on disk: */
	fid=pfopen(inputfilename,"rb");

	_printf_("read and create finite element model:\n");
	_printf_("\n   reading diagnostic horiz model data:\n");
	model->AddFormulation(fid,DiagnosticAnalysisEnum,HorizAnalysisEnum);

	_printf_("\n   reading diagnostic vert model data:\n");
	model->AddFormulation(fid,DiagnosticAnalysisEnum,VertAnalysisEnum);
	
	_printf_("\n   reading diagnostic stokes model data:\n");
	model->AddFormulation(fid,DiagnosticAnalysisEnum,StokesAnalysisEnum);
	
	_printf_("\n   reading diagnostic hutter model data:\n");
	model->AddFormulation(fid,DiagnosticAnalysisEnum,HutterAnalysisEnum);
	
	_printf_("\n   reading surface and bed slope computation model data:\n");
	model->AddFormulation(fid,SlopecomputeAnalysisEnum);

	/*get parameters: */
	model->FindParam(&qmu_analysis,QmuAnalysisEnum);
	model->FindParam(&control_analysis,ControlAnalysisEnum);
	model->FindParam(&waitonlock,WaitOnLockEnum);

	MPI_Barrier(MPI_COMM_WORLD); finish_init=MPI_Wtime();

	/*are we running the solution sequence, or a qmu wrapper around it? : */
	if(!qmu_analysis){
		if(!control_analysis){
			
			_printf_("call computational core:\n");
			MPI_Barrier(MPI_COMM_WORLD); start_core=MPI_Wtime( );
			results=diagnostic_core(model);
			MPI_Barrier(MPI_COMM_WORLD); finish_core=MPI_Wtime( );

			_printf_("process results:\n");
			ProcessResults(&processed_results,results,model,DiagnosticAnalysisEnum);
		}
		else{
			/*run control analysis: */
			_printf_("call computational core:\n");
			MPI_Barrier(MPI_COMM_WORLD); start_core=MPI_Wtime( );
			results=control_core(model);
			MPI_Barrier(MPI_COMM_WORLD); finish_core=MPI_Wtime( );

			_printf_("process results:\n");
			ProcessResults(&processed_results,results,model,ControlAnalysisEnum);
		}

		_printf_("write results to disk:\n");
		OutputResults(processed_results,outputfilename);
	}
	else{
		/*run qmu analysis: */
		_printf_("calling qmu analysis on diagnostic core:\n");

		#ifdef _HAVE_DAKOTA_ 
		MPI_Barrier(MPI_COMM_WORLD); start_core=MPI_Wtime( );
		Qmux(model,DiagnosticAnalysisEnum,NoneAnalysisEnum);
		MPI_Barrier(MPI_COMM_WORLD); finish_core=MPI_Wtime( );
	 	#else
		ISSMERROR(" Dakota not present, cannot do qmu!");
		#endif
	}

	if (waitonlock>0){
		_printf_("write lock file:\n");
		WriteLockFile(lockname);
	}

	/*Free ressources */
	delete model;
	delete results;
	delete processed_results;

	/*Get finish time and close*/
	MPI_Barrier(MPI_COMM_WORLD); finish = MPI_Wtime( );
	_printf_("\n   %-34s %f seconds  \n","Model initialization elapsed time:",finish_init-start_init);
	_printf_("   %-34s %f seconds  \n","Core solution elapsed time:",finish_core-start_core);
	_printf_("\n   %s %i hrs %i min %i sec\n\n","Total elapsed time:",int((finish-start)/3600),int(int(finish-start)%3600/60),int(finish-start)%60);
	_printf_("closing MPI and Petsc\n");
	PetscFinalize(); 
	
	/*end module: */
	MODULEEND();

	return 0; //unix success return;
}