| 1 | /*! \file Model.cpp
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| 2 | * \brief Model structure that mirrors the matlab workspace structure. Servers for the serial
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| 3 | * and parallel runs.
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| 4 | */
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| 5 |
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| 6 | #ifdef HAVE_CONFIG_H
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| 7 | #include "config.h"
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| 8 | #else
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| 9 | #error "Cannot compile with HAVE_CONFIG_H symbol! run configure first!"
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| 10 | #endif
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| 11 |
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| 12 | #include "../shared/shared.h"
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| 13 | #include "../io/io.h"
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| 14 | #include "../include/globals.h"
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| 15 | #include "../include/macros.h"
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| 16 |
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| 17 | #include <string.h>
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| 18 | #include "stdio.h"
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| 19 |
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| 20 | #include "./Model.h"
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| 21 |
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| 22 |
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| 23 | /*!--------------------------------------------------
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| 24 | NewModel
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| 25 | --------------------------------------------------*/
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| 26 |
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| 27 | Model* NewModel(void) {
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| 28 | /*! create a new Model object */
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| 29 | Model* model=NULL;
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| 30 |
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| 31 | model=(Model*)xmalloc(sizeof(Model));
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| 32 |
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| 33 | /*!initialize all pointers to 0: */
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| 34 |
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| 35 |
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| 36 | model->repository=NULL;
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| 37 | model->meshtype=NULL;
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| 38 | model->analysis_type=NULL;
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| 39 | model->sub_analysis_type=NULL;
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| 40 | model->numberofelements=0;
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| 41 | model->numberofnodes=0;
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| 42 | model->x=NULL;
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| 43 | model->y=NULL;
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| 44 | model->z=NULL;
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| 45 | model->elements=NULL;
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| 46 | model->elements_type=NULL;
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| 47 | model->numberofnodes2d=0;
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| 48 | model->elements2d=NULL;
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| 49 | model->deadgrids=NULL;
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| 50 | model->numlayers=0;
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| 51 | model->uppernodes=NULL;
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| 52 | model->gridonhutter=NULL;
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| 53 |
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| 54 | model->vx_obs=NULL;
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| 55 | model->vy_obs=NULL;
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| 56 | model->vx=NULL;
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| 57 | model->vy=NULL;
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| 58 | model->vz=NULL;
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| 59 | model->pressure=NULL;
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| 60 | model->temperature=NULL;
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| 61 | model->melting=NULL;
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| 62 | model->elementonbed=NULL;
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| 63 | model->elementonsurface=NULL;
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| 64 | model->gridonbed=NULL;
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| 65 | model->gridonsurface=NULL;
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| 66 | model->gridonstokes=NULL;
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| 67 | model->borderstokes=NULL;
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| 68 | model->thickness=NULL;
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| 69 | model->surface=NULL;
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| 70 | model->bed=NULL;
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| 71 | model->elementoniceshelf=NULL;
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| 72 | model->gridonicesheet=NULL;
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| 73 |
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| 74 | model->drag_type=0;
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| 75 | model->drag=NULL;
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| 76 | model->p=NULL;
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| 77 |
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| 78 |
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| 79 | model->numberofsegs_diag=0;
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| 80 | model->numberofsegs_diag_stokes=0;
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| 81 | model->segmentonneumann_diag=NULL;
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| 82 | model->segmentonneumann_diag_stokes=NULL;
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| 83 | model-> neumannvalues_diag=NULL;
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| 84 | model-> gridondirichlet_diag=NULL;
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| 85 | model-> dirichletvalues_diag=NULL;
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| 86 | //prognostic
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| 87 | model-> segmentonneumann_prog=NULL;
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| 88 | model-> neumannvalues_prog=NULL;
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| 89 | model-> gridondirichlet_prog=NULL;
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| 90 | model-> dirichletvalues_prog=NULL;
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| 91 | //prognostic2
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| 92 | model-> segmentonneumann_prog2=NULL;
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| 93 | model-> neumannvalues_prog2=NULL;
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| 94 | //thermal
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| 95 | model-> gridondirichlet_thermal=NULL;
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| 96 | model-> dirichletvalues_thermal=NULL;
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| 97 | model-> geothermalflux=NULL;
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| 98 |
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| 99 | /*!materials: */
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| 100 | model->rho_water=0;
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| 101 | model->rho_ice=0;
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| 102 | model->g=0;
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| 103 | model->n=0;
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| 104 | model->B=NULL;
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| 105 |
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| 106 | /*!control methods: */
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| 107 | model->control_type=NULL;
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| 108 |
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| 109 | /*!solution parameters: */
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| 110 | model->fit=NULL;
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| 111 | model->meanvel=0;
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| 112 | model->epsvel=0;
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| 113 | model->artificial_diffusivity=0;
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| 114 | model->nsteps=0;
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| 115 | model->tolx=0;
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| 116 | model->maxiter=NULL;
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| 117 | model->mincontrolconstraint=0;
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| 118 | model->maxcontrolconstraint=0;
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| 119 | model->debug=0;
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| 120 | model->plot=0;
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| 121 | model->eps_rel=0;
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| 122 | model->eps_abs=0;
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| 123 | model->dt=0;
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| 124 | model->ndt=0;
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| 125 | model->penalty_offset=0;
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| 126 | model->penalty_melting=0;
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| 127 | model->penalty_lock=0;
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| 128 | model->sparsity=0;
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| 129 | model->connectivity=0;
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| 130 | model->lowmem=0;
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| 131 | model->optscal=NULL;
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| 132 | model->yts=0;
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| 133 | model->viscosity_overshoot=0;
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| 134 | model->stokesreconditioning=0;
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| 135 | model->waitonlock=0;
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| 136 |
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| 137 | /*!thermal parameters: */
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| 138 | model->beta=0;
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| 139 | model->meltingpoint=0;
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| 140 | model->latentheat=0;
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| 141 | model->heatcapacity=0;
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| 142 | model->thermalconductivity=0;
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| 143 | model->min_thermal_constraints=0;
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| 144 | model->mixed_layer_capacity=0;
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| 145 | model->thermal_exchange_velocity=0;
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| 146 |
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| 147 |
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| 148 | model->numrifts=0;
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| 149 | model->riftsnumpenaltypairs=NULL;
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| 150 | model->riftspenaltypairs=NULL;
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| 151 | model->riftsfill=NULL;
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| 152 | model->riftsfriction=NULL;
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| 153 |
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| 154 | /*!penalties: */
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| 155 | model->numpenalties=0;
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| 156 | model->penalties=NULL;
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| 157 | model->penaltypartitioning=NULL;
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| 158 |
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| 159 | /*!basal: */
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| 160 | model->melting=NULL;
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| 161 | model->accumulation=NULL;
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| 162 |
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| 163 | /*elements type: */
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| 164 | model->ishutter=0;
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| 165 | model->ismacayealpattyn=0;
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| 166 | model->isstokes=0;
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| 167 |
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| 168 | return model;
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| 169 | }
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| 170 |
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| 171 |
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| 172 | /*!--------------------------------------------------
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| 173 | DeleteModel
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| 174 | --------------------------------------------------*/
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| 175 |
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| 176 | void DeleteModel(Model** pmodel){
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| 177 |
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| 178 | /*!Recover structure: */
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| 179 | Model* model = *pmodel;
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| 180 |
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| 181 | int i;
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| 182 |
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| 183 | /*!Two cases here:
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| 184 | * - serial mode: matlab's memory manager will take care of delete model when returning from Imp. Do nothing here, so as not to confuse
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| 185 | * the memory manager.
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| 186 | * - in parallel, anything the io layer does (FetchData) did needs to be erased explicitely in the model.
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| 187 | */
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| 188 |
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| 189 | #ifdef _PARALLEL_
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| 190 | xfree((void**)&model->x);
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| 191 | xfree((void**)&model->y);
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| 192 | xfree((void**)&model->z);
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| 193 | xfree((void**)&model->elements);
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| 194 | xfree((void**)&model->elements_type);
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| 195 | xfree((void**)&model->gridonhutter);
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| 196 | if (strcmp(model->meshtype,"3d")==0){
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| 197 | xfree((void**)&model->elements2d);
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| 198 | xfree((void**)&model->deadgrids);
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| 199 | xfree((void**)&model->uppernodes);
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| 200 | }
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| 201 | xfree((void**)&model->solverstring);
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| 202 | xfree((void**)&model->elementonbed);
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| 203 | xfree((void**)&model->elementonsurface);
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| 204 | xfree((void**)&model->gridonbed);
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| 205 | xfree((void**)&model->gridonsurface);
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| 206 | xfree((void**)&model->gridonstokes);
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| 207 | xfree((void**)&model->borderstokes);
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| 208 | xfree((void**)&model->thickness);
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| 209 | xfree((void**)&model->surface);
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| 210 | xfree((void**)&model->bed);
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| 211 | xfree((void**)&model->vx_obs);
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| 212 | xfree((void**)&model->vy_obs);
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| 213 | xfree((void**)&model->vx);
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| 214 | xfree((void**)&model->vy);
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| 215 | xfree((void**)&model->vz);
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| 216 | xfree((void**)&model->pressure);
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| 217 | xfree((void**)&model->temperature);
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| 218 | xfree((void**)&model->melting);
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| 219 | xfree((void**)&model->drag);
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| 220 | xfree((void**)&model->p);
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| 221 | xfree((void**)&model->q);
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| 222 | xfree((void**)&model->elementoniceshelf);
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| 223 | xfree((void**)&model->gridonicesheet);
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| 224 | xfree((void**)&model->segmentonneumann_diag);
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| 225 | xfree((void**)&model->segmentonneumann_diag_stokes);
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| 226 | xfree((void**)&model->neumannvalues_diag);
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| 227 | xfree((void**)&model->gridondirichlet_diag);
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| 228 | xfree((void**)&model->dirichletvalues_diag);
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| 229 | xfree((void**)&model->segmentonneumann_prog);
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| 230 | xfree((void**)&model->neumannvalues_prog);
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| 231 | xfree((void**)&model->gridondirichlet_prog);
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| 232 | xfree((void**)&model->dirichletvalues_prog);
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| 233 | xfree((void**)&model->segmentonneumann_prog2);
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| 234 | xfree((void**)&model->neumannvalues_prog2);
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| 235 | xfree((void**)&model->gridondirichlet_thermal);
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| 236 | xfree((void**)&model->dirichletvalues_thermal);
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| 237 | xfree((void**)&model->geothermalflux);
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| 238 | xfree((void**)&model->melting);
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| 239 | xfree((void**)&model->accumulation);
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| 240 | xfree((void**)&model->B);
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| 241 | xfree((void**)&model->n);
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| 242 | xfree((void**)&model->fit);
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| 243 | xfree((void**)&model->optscal);
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| 244 | xfree((void**)&model->maxiter);
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| 245 |
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| 246 |
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| 247 | /*!Delete structure fields: */
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| 248 | xfree((void**)&model->repository);
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| 249 | xfree((void**)&model->meshtype);
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| 250 | xfree((void**)&model->analysis_type);
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| 251 | xfree((void**)&model->sub_analysis_type);
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| 252 |
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| 253 | if(model->numrifts){
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| 254 | for(i=0;i<model->numrifts;i++){
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| 255 | double* riftpenaltypairs=model->riftspenaltypairs[i];
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| 256 | xfree((void**)&riftpenaltypairs);
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| 257 | }
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| 258 | xfree((void**)&model->riftspenaltypairs);
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| 259 | xfree((void**)&model->riftsnumpenaltypairs);
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| 260 | xfree((void**)&model->riftsfill);
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| 261 | xfree((void**)&model->riftsfriction);
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| 262 | }
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| 263 |
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| 264 | xfree((void**)&model->penalties);
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| 265 | xfree((void**)&model->penaltypartitioning);
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| 266 |
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| 267 | xfree((void**)&model->control_type);
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| 268 |
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| 269 | xfree((void**)&model->epart);
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| 270 | xfree((void**)&model->npart);
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| 271 | xfree((void**)&model->my_grids);
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| 272 | xfree((void**)&model->my_bordergrids);
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| 273 |
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| 274 | /*!Delete entire structure: */
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| 275 | xfree((void**)pmodel);
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| 276 | #endif
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| 277 | }
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| 278 |
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| 279 | /*!--------------------------------------------------
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| 280 | ModelInit
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| 281 | --------------------------------------------------*/
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| 282 |
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| 283 | #undef __FUNCT__
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| 284 | #define __FUNCT__ "ModelInit"
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| 285 |
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| 286 | int ModelInit(Model** pmodel,ConstDataHandle model_handle){
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| 287 |
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| 288 | int i,j;
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| 289 |
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| 290 | /*output: */
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| 291 | Model* model=NULL;
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| 292 |
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| 293 | /*Allocate model: */
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| 294 | model=NewModel();
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| 295 |
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| 296 | /*In ModelInit, we get all the data that is not difficult to get, and that is small: */
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| 297 | ModelFetchData((void**)&model->analysis_type,NULL,NULL,model_handle,"analysis_type","String",NULL);
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| 298 | ModelFetchData((void**)&model->sub_analysis_type,NULL,NULL,model_handle,"sub_analysis_type","String",NULL);
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| 299 |
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| 300 | ModelFetchData((void**)&model->meshtype,NULL,NULL,model_handle,"type","String",NULL);
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| 301 | /*!Get numberofelements and numberofnodes: */
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| 302 | ModelFetchData((void**)&model->numberofnodes,NULL,NULL,model_handle,"numberofgrids","Integer",NULL);
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| 303 | ModelFetchData((void**)&model->numberofelements,NULL,NULL,model_handle,"numberofelements","Integer",NULL);
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| 304 |
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| 305 | /*!In case we are running 3d, we are going to need the collapsed and non-collapsed 2d meshes, from which the 3d mesh was extruded: */
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| 306 | if (strcmp(model->meshtype,"3d")==0){
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| 307 |
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| 308 | /*!Deal with 2d mesh: */
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| 309 | ModelFetchData((void**)&model->numberofelements2d,NULL,NULL,model_handle,"numberofelements2d","Integer",NULL);
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| 310 | ModelFetchData((void**)&model->numberofnodes2d,NULL,NULL,model_handle,"numberofgrids2d","Integer",NULL);
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| 311 | ModelFetchData((void**)&model->numlayers,NULL,NULL,model_handle,"numlayers","Integer",NULL);
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| 312 | }
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| 313 |
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| 314 | /*elements type: */
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| 315 | ModelFetchData((void**)&model->ishutter,NULL,NULL,model_handle,"ishutter","Integer",NULL);
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| 316 | ModelFetchData((void**)&model->ismacayealpattyn,NULL,NULL,model_handle,"ismacayealpattyn","Integer",NULL);
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| 317 | ModelFetchData((void**)&model->isstokes,NULL,NULL,model_handle,"isstokes","Integer",NULL);
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| 318 |
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| 319 | /*!Get drag_type, drag and p,q: */
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| 320 | ModelFetchData((void**)&model->drag_type,NULL,NULL,model_handle,"drag_type","Integer",NULL);
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| 321 |
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| 322 | /*!Get materials: */
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| 323 | ModelFetchData((void**)&model->rho_water,NULL,NULL,model_handle,"rho_water","Scalar",NULL);
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| 324 | ModelFetchData((void**)&model->rho_ice,NULL,NULL,model_handle,"rho_ice","Scalar",NULL);
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| 325 | ModelFetchData((void**)&model->g,NULL,NULL,model_handle,"g","Scalar",NULL);
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| 326 |
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| 327 | /*Get control parameters: */
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| 328 | ModelFetchData((void**)&model->control_type,NULL,NULL,model_handle,"control_type","String",NULL);
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| 329 |
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| 330 | /*!Get solution parameters: */
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| 331 | ModelFetchData((void**)&model->yts,NULL,NULL,model_handle,"yts","Scalar",NULL);
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| 332 | ModelFetchData((void**)&model->meanvel,NULL,NULL,model_handle,"meanvel","Scalar",NULL);
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| 333 | ModelFetchData((void**)&model->epsvel,NULL,NULL,model_handle,"epsvel","Scalar",NULL);
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| 334 | ModelFetchData((void**)&model->debug,NULL,NULL,model_handle,"debug","Integer",NULL);
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| 335 | ModelFetchData((void**)&model->plot,NULL,NULL,model_handle,"plot","Integer",NULL);
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| 336 | ModelFetchData((void**)&model->artificial_diffusivity,NULL,NULL,model_handle,"artificial_diffusivity","Integer",NULL);
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| 337 | ModelFetchData((void**)&model->nsteps,NULL,NULL,model_handle,"nsteps","Integer",NULL);
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| 338 | ModelFetchData((void**)&model->tolx,NULL,NULL,model_handle,"tolx","Scalar",NULL);
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| 339 | ModelFetchData((void**)&model->mincontrolconstraint,NULL,NULL,model_handle,"mincontrolconstraint","Scalar",NULL);
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| 340 | ModelFetchData((void**)&model->maxcontrolconstraint,NULL,NULL,model_handle,"maxcontrolconstraint","Scalar",NULL);
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| 341 | ModelFetchData((void**)&model->eps_rel,NULL,NULL,model_handle,"eps_rel","Scalar",NULL);
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| 342 | ModelFetchData((void**)&model->eps_abs,NULL,NULL,model_handle,"eps_abs","Scalar",NULL);
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| 343 | ModelFetchData((void**)&model->dt,NULL,NULL,model_handle,"dt","Scalar",NULL);
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| 344 | ModelFetchData((void**)&model->ndt,NULL,NULL,model_handle,"ndt","Scalar",NULL);
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| 345 | ModelFetchData((void**)&model->penalty_offset,NULL,NULL,model_handle,"penalty_offset","Scalar",NULL);
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| 346 | ModelFetchData((void**)&model->penalty_melting,NULL,NULL,model_handle,"penalty_melting","Scalar",NULL);
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| 347 | ModelFetchData((void**)&model->penalty_lock,NULL,NULL,model_handle,"penalty_lock","Integer",NULL);
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| 348 | ModelFetchData((void**)&model->sparsity,NULL,NULL,model_handle,"sparsity","Scalar",NULL);
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| 349 | ModelFetchData((void**)&model->connectivity,NULL,NULL,model_handle,"connectivity","Integer",NULL);
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| 350 | ModelFetchData((void**)&model->lowmem,NULL,NULL,model_handle,"lowmem","Integer",NULL);
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| 351 | ModelFetchData((void**)&model->solverstring,NULL,NULL,model_handle,"solverstring","String",NULL);
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| 352 | ModelFetchData((void**)&model->viscosity_overshoot,NULL,NULL,model_handle,"viscosity_overshoot","Scalar",NULL);
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| 353 | ModelFetchData((void**)&model->stokesreconditioning,NULL,NULL,model_handle,"stokesreconditioning","Scalar",NULL);
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| 354 | ModelFetchData((void**)&model->waitonlock,NULL,NULL,model_handle,"waitonlock","Integer",NULL);
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| 355 |
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| 356 | /*!Get thermal parameters: */
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| 357 | ModelFetchData((void**)&model->beta,NULL,NULL,model_handle,"beta","Scalar",NULL);
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| 358 | ModelFetchData((void**)&model->meltingpoint,NULL,NULL,model_handle,"meltingpoint","Scalar",NULL);
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| 359 | ModelFetchData((void**)&model->latentheat,NULL,NULL,model_handle,"latentheat","Scalar",NULL);
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| 360 | ModelFetchData((void**)&model->heatcapacity,NULL,NULL,model_handle,"heatcapacity","Scalar",NULL);
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| 361 | ModelFetchData((void**)&model->thermalconductivity,NULL,NULL,model_handle,"thermalconductivity","Scalar",NULL);
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| 362 | ModelFetchData((void**)&model->min_thermal_constraints,NULL,NULL,model_handle,"min_thermal_constraints","Integer",NULL);
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| 363 | ModelFetchData((void**)&model->mixed_layer_capacity,NULL,NULL,model_handle,"mixed_layer_capacity","Scalar",NULL);
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| 364 | ModelFetchData((void**)&model->thermal_exchange_velocity,NULL,NULL,model_handle,"thermal_exchange_velocity","Scalar",NULL);
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| 365 |
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| 366 | /*rifts: */
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| 367 | ModelFetchData((void**)&model->numrifts,NULL,NULL,model_handle,"numrifts","Integer",NULL);
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| 368 |
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| 369 | /*Assign output pointers: */
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| 370 | *pmodel=model;
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| 371 |
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| 372 | return 1;
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| 373 | }
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| 374 |
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| 375 | /*!--------------------------------------------------
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| 376 | ModelEcho
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| 377 | --------------------------------------------------*/
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| 378 | void ModelEcho(Model* model,int which_part,int rank) {
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| 379 |
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| 380 | //which_part determines what gets echoed, otherwise, we'll get too much output.
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| 381 | //1-> penalties
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| 382 |
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| 383 | int i,j;
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| 384 |
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| 385 | if(which_part==1 && my_rank==rank && (strcmp(model->meshtype,"3d")==0)){
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| 386 | printf("Model penalties: \n");
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| 387 | printf(" number of penalties: %i\n",model->numpenalties);
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| 388 | printf(" grids: \n");
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| 389 |
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| 390 | for(i=0;i<model->numpenalties;i++){
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| 391 | for(j=0;j<model->numlayers;j++){
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| 392 | printf("%i ",(int)*(model->penalties+model->numlayers*i+j));
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| 393 | }
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| 394 | printf("\n");
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| 395 | }
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| 396 | }
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| 397 |
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| 398 | if(which_part==2 && my_rank==rank){
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| 399 | printf("Model rifts: \n");
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| 400 | printf(" number of rifts: %i\n",model->numrifts);
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| 401 | for(i=0;i<model->numrifts;i++){
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| 402 | double* penaltypairs=model->riftspenaltypairs[i];
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| 403 | printf(" rift #%i\n",i);
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| 404 | for (j=0;j<model->riftsnumpenaltypairs[i];j++){
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| 405 | printf(" grids %g %g elements %g %g normal [%g,%g] length %g\n",*(penaltypairs+7*j+0),*(penaltypairs+7*j+1),*(penaltypairs+7*j+2),*(penaltypairs+7*j+3),
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| 406 | *(penaltypairs+7*j+4),*(penaltypairs+7*j+5),*(penaltypairs+7*j+6));
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| 407 | }
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| 408 | printf(" friction %g fill %i\n",model->riftsfriction[i],model->riftsfill[i]);
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| 409 | }
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| 410 | }
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| 411 | cleanup_and_return:
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| 412 | return;
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| 413 | }
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