| 1 | /*
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| 2 | * CreateElementsNodesAndMaterialsDiagnosticHoriz.c:
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| 3 | */
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| 4 |
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| 5 | #undef __FUNCT__
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| 6 | #define __FUNCT__ "CreateElementsNodesAndMaterialsDiagnosticHoriz"
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| 7 |
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| 8 | #include "../DataSet/DataSet.h"
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| 9 | #include "../toolkits/toolkits.h"
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| 10 | #include "../EnumDefinitions/EnumDefinitions.h"
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| 11 | #include "../objects/objects.h"
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| 12 | #include "../shared/shared.h"
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| 13 | #include "./ModelProcessorx.h"
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| 14 | #include "./MeshPartitionx/MeshPartitionx.h"
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| 15 |
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| 16 |
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| 17 | int CreateElementsNodesAndMaterialsDiagnosticHoriz(DataSet** pelements,DataSet** pnodes, DataSet** pmaterials, Model* model,ConstDataHandle model_handle){
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| 18 |
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| 19 |
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| 20 | /*output: int* epart, int* my_grids, double* my_bordergrids*/
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| 21 |
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| 22 |
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| 23 | int noerr=1;
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| 24 | int i,j,k,n;
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| 25 | extern int my_rank;
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| 26 | extern int num_procs;
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| 27 |
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| 28 | /*DataSets: */
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| 29 | DataSet* elements = NULL;
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| 30 | DataSet* nodes = NULL;
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| 31 | DataSet* materials = NULL;
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| 32 |
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| 33 | /*Objects: */
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| 34 | Node* node = NULL;
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| 35 | Tria* tria = NULL;
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| 36 | Penta* penta = NULL;
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| 37 | Matice* matice = NULL;
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| 38 | Matpar* matpar = NULL;
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| 39 |
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| 40 | int analysis_type;
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| 41 |
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| 42 | /*output: */
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| 43 | int* epart=NULL; //element partitioning.
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| 44 | int* npart=NULL; //node partitioning.
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| 45 | int* my_grids=NULL;
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| 46 | double* my_bordergrids=NULL;
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| 47 |
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| 48 |
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| 49 | /*intermediary: */
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| 50 | int elements_width; //size of elements
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| 51 | double B_avg;
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| 52 |
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| 53 | /*tria constructor input: */
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| 54 | int tria_id;
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| 55 | int tria_mid;
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| 56 | int tria_mparid;
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| 57 | int tria_g[3];
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| 58 | double tria_h[3];
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| 59 | double tria_s[3];
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| 60 | double tria_b[3];
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| 61 | double tria_k[3];
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| 62 | int tria_friction_type;
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| 63 | double tria_p;
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| 64 | double tria_q;
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| 65 | int tria_shelf;
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| 66 | double tria_meanvel;/*!scaling ratio for velocities*/
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| 67 | double tria_epsvel; /*!minimum velocity to avoid infinite velocity ratios*/
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| 68 | double tria_viscosity_overshoot;
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| 69 |
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| 70 | /*matice constructor input: */
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| 71 | int matice_mid;
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| 72 | double matice_B;
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| 73 | double matice_n;
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| 74 |
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| 75 | /*penta constructor input: */
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| 76 |
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| 77 | int penta_id;
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| 78 | int penta_mid;
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| 79 | int penta_mparid;
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| 80 | int penta_g[6];
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| 81 | double penta_h[6];
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| 82 | double penta_s[6];
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| 83 | double penta_b[6];
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| 84 | double penta_k[6];
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| 85 | int penta_friction_type;
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| 86 | double penta_p;
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| 87 | double penta_q;
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| 88 | int penta_shelf;
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| 89 | int penta_onbed;
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| 90 | int penta_onsurface;
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| 91 | double penta_meanvel;/*!scaling ratio for velocities*/
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| 92 | double penta_epsvel; /*!minimum velocity to avoid infinite velocity ratios*/
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| 93 | int penta_collapse;
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| 94 | double penta_melting[6];
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| 95 | double penta_accumulation[6];
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| 96 | double penta_geothermalflux[6];
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| 97 | int penta_artdiff;
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| 98 | int penta_thermal_steadystate;
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| 99 |
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| 100 | /*matpar constructor input: */
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| 101 | int matpar_mid;
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| 102 | double matpar_rho_ice;
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| 103 | double matpar_rho_water;
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| 104 | double matpar_heatcapacity;
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| 105 | double matpar_thermalconductivity;
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| 106 | double matpar_latentheat;
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| 107 | double matpar_beta;
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| 108 | double matpar_meltingpoint;
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| 109 | double matpar_mixed_layer_capacity;
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| 110 | double matpar_thermal_exchange_velocity;
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| 111 | double matpar_g;
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| 112 | double matpar_viscosity_overshoot;
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| 113 |
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| 114 | /* node constructor input: */
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| 115 | int node_id;
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| 116 | int node_partitionborder=0;
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| 117 | double node_x[3];
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| 118 | int node_onbed;
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| 119 | int node_onsurface;
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| 120 | int node_numdofs;
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| 121 |
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| 122 |
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| 123 | #ifdef _PARALLEL_
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| 124 | /*Metis partitioning: */
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| 125 | int range;
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| 126 | Vec gridborder;
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| 127 | int my_numgrids;
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| 128 | int* all_numgrids=NULL;
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| 129 | int gridcount;
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| 130 | int count;
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| 131 | #endif
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| 132 | int first_grid_index;
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| 133 |
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| 134 | /*Rifts:*/
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| 135 | int* riftsnumpenaltypairs;
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| 136 | double** riftspenaltypairs;
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| 137 | int* riftsfill;
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| 138 | double* riftsfriction;
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| 139 | double* riftpenaltypairs=NULL;
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| 140 | int el1,el2;
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| 141 |
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| 142 | /*Penalty partitioning: */
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| 143 | int num_grids3d_collapsed;
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| 144 | double* double_penalties_grids3d_collapsed=NULL;
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| 145 | double* double_penalties_grids3d_noncollapsed=NULL;
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| 146 | int grid_ids[6];
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| 147 | int num_grid_ids;
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| 148 | int grid_id;
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| 149 |
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| 150 | /*Get analysis_type: */
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| 151 | analysis_type=AnalysisTypeAsEnum(model->analysis_type);
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| 152 |
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| 153 | /*First create the elements, nodes and material properties: */
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| 154 | elements = new DataSet(ElementsEnum());
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| 155 | nodes = new DataSet(NodesEnum());
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| 156 | materials = new DataSet(MaterialsEnum());
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| 157 |
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| 158 | /*Width of elements: */
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| 159 | if(strcmp(model->meshtype,"2d")==0){
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| 160 | elements_width=3; //tria elements
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| 161 | }
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| 162 | else{
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| 163 | elements_width=6; //penta elements
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| 164 | }
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| 165 |
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| 166 |
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| 167 | #ifdef _PARALLEL_
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| 168 | /*Determine parallel partitioning of elements: we use Metis for now. First load the data, then partition*/
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| 169 | if(strcmp(model->meshtype,"2d")==0){
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| 170 | /*load elements: */
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| 171 | ModelFetchData((void**)&model->elements,NULL,NULL,model_handle,"elements","Matrix","Mat");
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| 172 | }
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| 173 | else{
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| 174 | /*load elements2d: */
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| 175 | ModelFetchData((void**)&model->elements2d,NULL,NULL,model_handle,"elements2d","Matrix","Mat");
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| 176 | }
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| 177 |
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| 178 | MeshPartitionx(&epart, &npart,model->numberofelements,model->numberofnodes,model->elements, model->numberofelements2d,model->numberofnodes2d,model->elements2d,model->numlayers,elements_width, model->meshtype,num_procs);
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| 179 |
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| 180 | /*Free elements and elements2d: */
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| 181 | xfree((void**)&model->elements);
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| 182 | xfree((void**)&model->elements2d);
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| 183 |
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| 184 |
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| 185 | /*Deal with rifts, they have to be included into one partition only, not several: */
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| 186 | FetchRifts(&riftsnumpenaltypairs,&riftspenaltypairs,&riftsfill,&riftsfriction,model_handle,model->numrifts);
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| 187 |
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| 188 | for(i=0;i<model->numrifts;i++){
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| 189 | riftpenaltypairs=model->riftspenaltypairs[i];
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| 190 | for(j=0;j<model->riftsnumpenaltypairs[i];j++){
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| 191 | el1=(int)*(riftpenaltypairs+7*j+2)-1; //matlab indexing to c indexing
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| 192 | el2=(int)*(riftpenaltypairs+7*j+3)-1; //matlab indexing to c indexing
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| 193 | epart[el2]=epart[el1]; //ensures that this pair of elements will be in the same partition, as well as the corresponding grids;
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| 194 | }
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| 195 | }
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| 196 | /*Free rifts: */
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| 197 | xfree((void**)&riftsnumpenaltypairs);
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| 198 | for(i=0;i<model->numrifts;i++){
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| 199 | double* temp=riftspenaltypairs[i];
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| 200 | xfree((void**)&temp);
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| 201 | }
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| 202 | xfree((void**)&riftspenaltypairs);
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| 203 | xfree((void**)&riftsfill);
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| 204 | xfree((void**)&riftsfriction);
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| 205 |
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| 206 | /*Used later on: */
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| 207 | my_grids=(int*)xcalloc(model->numberofnodes,sizeof(int));
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| 208 | #endif
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| 209 |
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| 210 |
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| 211 |
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| 212 | /*elements created vary if we are dealing with a 2d mesh, or a 3d mesh: */
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| 213 |
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| 214 | /*2d mesh: */
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| 215 | if (strcmp(model->meshtype,"2d")==0){
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| 216 |
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| 217 | /*Fetch data needed: */
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| 218 | ModelFetchData((void**)&model->elements,NULL,NULL,model_handle,"elements","Matrix","Mat");
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| 219 | ModelFetchData((void**)&model->thickness,NULL,NULL,model_handle,"thickness","Matrix","Mat");
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| 220 | ModelFetchData((void**)&model->surface,NULL,NULL,model_handle,"surface","Matrix","Mat");
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| 221 | ModelFetchData((void**)&model->bed,NULL,NULL,model_handle,"bed","Matrix","Mat");
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| 222 | ModelFetchData((void**)&model->drag,NULL,NULL,model_handle,"drag","Matrix","Mat");
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| 223 | ModelFetchData((void**)&model->p,NULL,NULL,model_handle,"p","Matrix","Mat");
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| 224 | ModelFetchData((void**)&model->q,NULL,NULL,model_handle,"q","Matrix","Mat");
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| 225 | ModelFetchData((void**)&model->elementoniceshelf,NULL,NULL,model_handle,"elementoniceshelf","Matrix","Mat");
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| 226 | ModelFetchData((void**)&model->B,NULL,NULL,model_handle,"B","Matrix","Mat");
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| 227 | ModelFetchData((void**)&model->n,NULL,NULL,model_handle,"n","Matrix","Mat");
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| 228 |
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| 229 | for (i=0;i<model->numberofelements;i++){
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| 230 |
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| 231 | #ifdef _PARALLEL_
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| 232 | /*!All elements have been partitioned above, only create elements for this CPU: */
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| 233 | if(my_rank==epart[i]){
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| 234 | #endif
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| 235 |
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| 236 |
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| 237 | /*ids: */
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| 238 | tria_id=i+1; //matlab indexing.
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| 239 | tria_mid=i+1; //refers to the corresponding material property card
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| 240 | tria_mparid=model->numberofelements+1;//refers to the corresponding parmat property card
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| 241 |
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| 242 | /*vertices offsets: */
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| 243 | tria_g[0]=(int)*(model->elements+elements_width*i+0);
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| 244 | tria_g[1]=(int)*(model->elements+elements_width*i+1);
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| 245 | tria_g[2]=(int)*(model->elements+elements_width*i+2);
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| 246 |
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| 247 | /*thickness,surface and bed:*/
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| 248 | tria_h[0]= *(model->thickness+ ((int)*(model->elements+elements_width*i+0)-1)); //remember, elements is an index of vertices offsets, in matlab indexing.
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| 249 | tria_h[1]=*(model->thickness+ ((int)*(model->elements+elements_width*i+1)-1));
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| 250 | tria_h[2]=*(model->thickness+ ((int)*(model->elements+elements_width*i+2)-1)) ;
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| 251 |
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| 252 | tria_s[0]=*(model->surface+ ((int)*(model->elements+elements_width*i+0)-1));
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| 253 | tria_s[1]=*(model->surface+ ((int)*(model->elements+elements_width*i+1)-1));
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| 254 | tria_s[2]=*(model->surface+ ((int)*(model->elements+elements_width*i+2)-1));
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| 255 |
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| 256 | tria_b[0]=*(model->bed+ ((int)*(model->elements+elements_width*i+0)-1));
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| 257 | tria_b[1]=*(model->bed+ ((int)*(model->elements+elements_width*i+1)-1));
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| 258 | tria_b[2]=*(model->bed+ ((int)*(model->elements+elements_width*i+2)-1));
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| 259 |
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| 260 | /*basal drag:*/
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| 261 | tria_friction_type=(int)model->drag_type;
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| 262 |
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| 263 | tria_k[0]=*(model->drag+ ((int)*(model->elements+elements_width*i+0)-1));
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| 264 | tria_k[1]=*(model->drag+ ((int)*(model->elements+elements_width*i+1)-1));
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| 265 | tria_k[2]=*(model->drag+ ((int)*(model->elements+elements_width*i+2)-1));
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| 266 |
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| 267 | tria_p=model->p[i];
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| 268 | tria_q=model->q[i];
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| 269 |
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| 270 | /*element on iceshelf?:*/
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| 271 | tria_shelf=(int)*(model->elementoniceshelf+i);
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| 272 |
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| 273 | tria_meanvel=model->meanvel;
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| 274 | tria_epsvel=model->epsvel;
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| 275 |
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| 276 | /*viscosity_overshoot*/
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| 277 | tria_viscosity_overshoot=model->viscosity_overshoot;
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| 278 |
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| 279 | /*Create tria element using its constructor:*/
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| 280 | tria=new Tria(tria_id, tria_mid, tria_mparid, tria_g, tria_h, tria_s, tria_b, tria_k, tria_friction_type, tria_p, tria_q, tria_shelf, tria_meanvel, tria_epsvel, tria_viscosity_overshoot);
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| 281 |
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| 282 | /*Add tria element to elements dataset: */
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| 283 | elements->AddObject(tria);
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| 284 |
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| 285 | /*Deal with material property card: */
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| 286 | matice_mid=i+1; //same as the material id from the geom2 elements.
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| 287 |
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| 288 | /*Average B over 3 grid elements: */
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| 289 | B_avg=0;
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| 290 | for(j=0;j<3;j++){
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| 291 | B_avg+=*(model->B+((int)*(model->elements+elements_width*i+j)-1));
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| 292 | }
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| 293 | B_avg=B_avg/3;
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| 294 | matice_B=B_avg;
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| 295 | matice_n=(double)*(model->n+i);
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| 296 |
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| 297 | /*Create matice using its constructor:*/
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| 298 | matice= new Matice(matice_mid,matice_B,matice_n);
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| 299 |
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| 300 | /*Add matice element to materials dataset: */
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| 301 | materials->AddObject(matice);
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| 302 |
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| 303 | #ifdef _PARALLEL_
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| 304 | /*Now that we are here, we can also start building the list of grids belonging to this node partition: we use
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| 305 | *the element index to do this. For each element n, we know index[n][0:2] holds the indices (matlab indexing)
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| 306 | into the grid coordinates. If we start plugging 1 into my_grids for each index[n][i] (i=0:2), then my_grids
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| 307 | will hold which grids belong to this partition*/
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| 308 | my_grids[(int)*(model->elements+elements_width*i+0)-1]=1;
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| 309 | my_grids[(int)*(model->elements+elements_width*i+1)-1]=1;
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| 310 | my_grids[(int)*(model->elements+elements_width*i+2)-1]=1;
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| 311 | #endif
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| 312 |
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| 313 | #ifdef _PARALLEL_
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| 314 | }//if(my_rank==epart[i])
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| 315 | #endif
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| 316 |
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| 317 | }//for (i=0;i<numberofelements;i++)
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| 318 |
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| 319 |
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| 320 | /*Free data : */
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| 321 | /*xfree((void**)&model->elements);
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| 322 | xfree((void**)&model->thickness);
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| 323 | xfree((void**)&model->surface);
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| 324 | xfree((void**)&model->bed);
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| 325 | xfree((void**)&model->drag);
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| 326 | xfree((void**)&model->p);
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| 327 | xfree((void**)&model->q);
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| 328 | xfree((void**)&model->elementoniceshelf);
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| 329 | xfree((void**)&model->B);
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| 330 | xfree((void**)&model->n);*/
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| 331 | }
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| 332 | else{ // if (strcmp(meshtype,"2d")==0)
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| 333 |
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| 334 | /*Fetch data needed: */
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| 335 | ModelFetchData((void**)&model->elements,NULL,NULL,model_handle,"elements","Matrix","Mat");
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| 336 | ModelFetchData((void**)&model->thickness,NULL,NULL,model_handle,"thickness","Matrix","Mat");
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| 337 | ModelFetchData((void**)&model->surface,NULL,NULL,model_handle,"surface","Matrix","Mat");
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| 338 | ModelFetchData((void**)&model->bed,NULL,NULL,model_handle,"bed","Matrix","Mat");
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| 339 | ModelFetchData((void**)&model->drag,NULL,NULL,model_handle,"drag","Matrix","Mat");
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| 340 | ModelFetchData((void**)&model->p,NULL,NULL,model_handle,"p","Matrix","Mat");
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| 341 | ModelFetchData((void**)&model->q,NULL,NULL,model_handle,"q","Matrix","Mat");
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| 342 | ModelFetchData((void**)&model->elementoniceshelf,NULL,NULL,model_handle,"elementoniceshelf","Matrix","Mat");
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| 343 | ModelFetchData((void**)&model->elementonbed,NULL,NULL,model_handle,"elementonbed","Matrix","Mat");
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| 344 | ModelFetchData((void**)&model->elementonsurface,NULL,NULL,model_handle,"elementonsurface","Matrix","Mat");
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| 345 | ModelFetchData((void**)&model->elements_type,NULL,NULL,model_handle,"elements_type","Matrix","Mat");
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| 346 | ModelFetchData((void**)&model->B,NULL,NULL,model_handle,"B","Matrix","Mat");
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| 347 | ModelFetchData((void**)&model->n,NULL,NULL,model_handle,"n","Matrix","Mat");
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| 348 |
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| 349 | for (i=0;i<model->numberofelements;i++){
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| 350 | #ifdef _PARALLEL_
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| 351 | /*We are using our element partition to decide which elements will be created on this node: */
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| 352 | if(my_rank==epart[i]){
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| 353 | #endif
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| 354 |
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| 355 |
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| 356 | /*name and id: */
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| 357 | penta_id=i+1; //matlab indexing.
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| 358 | penta_mid=i+1; //refers to the corresponding material property card
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| 359 | penta_mparid=model->numberofelements+1;//refers to the corresponding parmat property card
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| 360 |
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| 361 | /*vertices,thickness,surface,bed and drag: */
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| 362 | for(j=0;j<6;j++){
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| 363 | penta_g[j]=(int)*(model->elements+elements_width*i+j);
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| 364 | penta_h[j]=*(model->thickness+ ((int)*(model->elements+elements_width*i+j)-1));
|
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| 365 | penta_s[j]=*(model->surface+ ((int)*(model->elements+elements_width*i+j)-1));
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| 366 | penta_b[j]=*(model->bed+ ((int)*(model->elements+elements_width*i+j)-1));
|
|---|
| 367 | penta_k[j]=*(model->drag+ ((int)*(model->elements+elements_width*i+j)-1));
|
|---|
| 368 | }
|
|---|
| 369 |
|
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| 370 | /*basal drag:*/
|
|---|
| 371 | penta_friction_type=(int)model->drag_type;
|
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| 372 |
|
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| 373 | penta_p=model->p[i];
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| 374 | penta_q=model->q[i];
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| 375 |
|
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| 376 | /*diverse: */
|
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| 377 | penta_shelf=(int)*(model->elementoniceshelf+i);
|
|---|
| 378 | penta_onbed=(int)*(model->elementonbed+i);
|
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| 379 | penta_onsurface=(int)*(model->elementonsurface+i);
|
|---|
| 380 | penta_meanvel=model->meanvel;
|
|---|
| 381 | penta_epsvel=model->epsvel;
|
|---|
| 382 |
|
|---|
| 383 | if (*(model->elements_type+2*i+0)==MacAyealEnum()){ //elements of type 3 are MacAyeal type Penta. We collapse the formulation on their base.
|
|---|
| 384 | penta_collapse=1;
|
|---|
| 385 | }
|
|---|
| 386 | else{
|
|---|
| 387 | penta_collapse=0;
|
|---|
| 388 | }
|
|---|
| 389 |
|
|---|
| 390 |
|
|---|
| 391 | /*Create Penta using its constructor:*/
|
|---|
| 392 | penta= new Penta( penta_id,penta_mid,penta_mparid,penta_g,penta_h,penta_s,penta_b,penta_k,penta_friction_type,
|
|---|
| 393 | penta_p,penta_q,penta_shelf,penta_onbed,penta_onsurface,penta_meanvel,penta_epsvel,
|
|---|
| 394 | penta_collapse,penta_melting,penta_accumulation,penta_geothermalflux,penta_artdiff,
|
|---|
| 395 | penta_thermal_steadystate);
|
|---|
| 396 |
|
|---|
| 397 | /*Add penta element to elements dataset: */
|
|---|
| 398 | elements->AddObject(penta);
|
|---|
| 399 |
|
|---|
| 400 |
|
|---|
| 401 | /*Deal with material:*/
|
|---|
| 402 | matice_mid=i+1; //same as the material id from the geom2 elements.
|
|---|
| 403 | /*Average B over 6 element grids: */
|
|---|
| 404 | B_avg=0;
|
|---|
| 405 | for(j=0;j<6;j++){
|
|---|
| 406 | B_avg+=*(model->B+((int)*(model->elements+elements_width*i+j)-1));
|
|---|
| 407 | }
|
|---|
| 408 | B_avg=B_avg/6;
|
|---|
| 409 | matice_B= B_avg;
|
|---|
| 410 | matice_n=(double)*(model->n+i);
|
|---|
| 411 |
|
|---|
| 412 | /*Create matice using its constructor:*/
|
|---|
| 413 | matice= new Matice(matice_mid,matice_B,matice_n);
|
|---|
| 414 |
|
|---|
| 415 | /*Add matice element to materials dataset: */
|
|---|
| 416 | materials->AddObject(matice);
|
|---|
| 417 |
|
|---|
| 418 | #ifdef _PARALLEL_
|
|---|
| 419 | /*Now that we are here, we can also start building the list of grids belonging to this node partition: we use
|
|---|
| 420 | *the element index to do this. For each element n, we know index[n][0:2] holds the indices (matlab indexing)
|
|---|
| 421 | into the grid coordinates. If we start plugging 1 into my_grids for each index[n][i] (i=0:2), then my_grids
|
|---|
| 422 | will hold which grids belong to this partition*/
|
|---|
| 423 | my_grids[(int)*(model->elements+elements_width*i+0)-1]=1;
|
|---|
| 424 | my_grids[(int)*(model->elements+elements_width*i+1)-1]=1;
|
|---|
| 425 | my_grids[(int)*(model->elements+elements_width*i+2)-1]=1;
|
|---|
| 426 | my_grids[(int)*(model->elements+elements_width*i+3)-1]=1;
|
|---|
| 427 | my_grids[(int)*(model->elements+elements_width*i+4)-1]=1;
|
|---|
| 428 | my_grids[(int)*(model->elements+elements_width*i+5)-1]=1;
|
|---|
| 429 | #endif
|
|---|
| 430 |
|
|---|
| 431 | #ifdef _PARALLEL_
|
|---|
| 432 | }//if(my_rank==epart[i])
|
|---|
| 433 | #endif
|
|---|
| 434 |
|
|---|
| 435 | }//for (i=0;i<numberofelements;i++)
|
|---|
| 436 |
|
|---|
| 437 | /*Free data: */
|
|---|
| 438 | xfree((void**)&model->elements);
|
|---|
| 439 | xfree((void**)&model->thickness);
|
|---|
| 440 | xfree((void**)&model->surface);
|
|---|
| 441 | xfree((void**)&model->bed);
|
|---|
| 442 | xfree((void**)&model->drag);
|
|---|
| 443 | xfree((void**)&model->p);
|
|---|
| 444 | xfree((void**)&model->q);
|
|---|
| 445 | xfree((void**)&model->elementoniceshelf);
|
|---|
| 446 | xfree((void**)&model->elementonbed);
|
|---|
| 447 | xfree((void**)&model->elementonsurface);
|
|---|
| 448 | xfree((void**)&model->elements_type);
|
|---|
| 449 | xfree((void**)&model->n);
|
|---|
| 450 | xfree((void**)&model->B);
|
|---|
| 451 |
|
|---|
| 452 | } //if (strcmp(meshtype,"2d")==0)
|
|---|
| 453 |
|
|---|
| 454 | /*Add one constant material property to materials: */
|
|---|
| 455 | matpar_mid=model->numberofelements+1; //put it at the end of the materials
|
|---|
| 456 | matpar_g=model->g;
|
|---|
| 457 | matpar_viscosity_overshoot=model->viscosity_overshoot;
|
|---|
| 458 | matpar_rho_ice=model->rho_ice;
|
|---|
| 459 | matpar_rho_water=model->rho_water;
|
|---|
| 460 | matpar_thermalconductivity=model->thermalconductivity;
|
|---|
| 461 | matpar_heatcapacity=model->heatcapacity;
|
|---|
| 462 | matpar_latentheat=model->latentheat;
|
|---|
| 463 | matpar_beta=model->beta;
|
|---|
| 464 | matpar_meltingpoint=model->meltingpoint;
|
|---|
| 465 | matpar_mixed_layer_capacity=model->mixed_layer_capacity;
|
|---|
| 466 | matpar_thermal_exchange_velocity=model->thermal_exchange_velocity;
|
|---|
| 467 |
|
|---|
| 468 | /*Create matpar object using its constructor: */
|
|---|
| 469 | matpar=new Matpar(matpar_mid,matpar_rho_ice,matpar_rho_water,matpar_heatcapacity,matpar_thermalconductivity,
|
|---|
| 470 | matpar_latentheat,matpar_beta,matpar_meltingpoint,matpar_mixed_layer_capacity,
|
|---|
| 471 | matpar_thermal_exchange_velocity,matpar_g,matpar_viscosity_overshoot);
|
|---|
| 472 |
|
|---|
| 473 | /*Add to materials datset: */
|
|---|
| 474 | materials->AddObject(matpar);
|
|---|
| 475 |
|
|---|
| 476 | #ifdef _PARALLEL_
|
|---|
| 477 | /*From the element partitioning, we can determine which grids are on the inside of this cpu's
|
|---|
| 478 | *element partition, and which are on its border with other nodes:*/
|
|---|
| 479 | gridborder=NewVec(model->numberofnodes);
|
|---|
| 480 |
|
|---|
| 481 | for (i=0;i<model->numberofnodes;i++){
|
|---|
| 482 | if(my_grids[i])VecSetValue(gridborder,i,1,ADD_VALUES);
|
|---|
| 483 | }
|
|---|
| 484 | VecAssemblyBegin(gridborder);
|
|---|
| 485 | VecAssemblyEnd(gridborder);
|
|---|
| 486 |
|
|---|
| 487 | #ifdef _DEBUG_
|
|---|
| 488 | VecView(gridborder,PETSC_VIEWER_STDOUT_WORLD);
|
|---|
| 489 | #endif
|
|---|
| 490 |
|
|---|
| 491 | VecToMPISerial(&my_bordergrids,gridborder);
|
|---|
| 492 |
|
|---|
| 493 | #ifdef _DEBUG_
|
|---|
| 494 | if(my_rank==0){
|
|---|
| 495 | for (i=0;i<model->numberofnodes;i++){
|
|---|
| 496 | printf("Grid id %i Border grid %lf\n",i+1,my_bordergrids[i]);
|
|---|
| 497 | }
|
|---|
| 498 | }
|
|---|
| 499 | #endif
|
|---|
| 500 | #endif
|
|---|
| 501 |
|
|---|
| 502 | /*Partition penalties in 3d: */
|
|---|
| 503 | if(strcmp(model->meshtype,"3d")==0){
|
|---|
| 504 |
|
|---|
| 505 | /*Get penalties: */
|
|---|
| 506 | ModelFetchData((void**)&model->penalties,&model->numpenalties,NULL,model_handle,"penalties","Matrix","Mat");
|
|---|
| 507 |
|
|---|
| 508 | if(model->numpenalties){
|
|---|
| 509 |
|
|---|
| 510 | model->penaltypartitioning=(int*)xmalloc(model->numpenalties*sizeof(int));
|
|---|
| 511 | for(i=0;i<model->numpenalties;i++)model->penaltypartitioning[i]=-1;
|
|---|
| 512 |
|
|---|
| 513 | for(i=0;i<model->numpenalties;i++){
|
|---|
| 514 | first_grid_index=(int)(*(model->penalties+i*model->numlayers+0)-1);
|
|---|
| 515 | if((my_grids[first_grid_index]==1) && (my_bordergrids[first_grid_index]<=1.0) ) { //this grid belongs to this node's internal partition grids
|
|---|
| 516 | /*All grids that are being penalised belong to this node's internal grid partition.:*/
|
|---|
| 517 | model->penaltypartitioning[i]=1;
|
|---|
| 518 | }
|
|---|
| 519 | if(my_bordergrids[first_grid_index]>1.0) { //this grid belongs to a partition border
|
|---|
| 520 | model->penaltypartitioning[i]=0;
|
|---|
| 521 | }
|
|---|
| 522 | }
|
|---|
| 523 | }
|
|---|
| 524 |
|
|---|
| 525 | /*Free penalties: */
|
|---|
| 526 | xfree((void**)&model->penalties);
|
|---|
| 527 | }
|
|---|
| 528 |
|
|---|
| 529 | /*Ok, let's summarise. Now, every CPU has the following two arrays: my_grids, and my_bordergrids.
|
|---|
| 530 | We can therefore determine which grids are internal to this node's partition
|
|---|
| 531 | and which ones are shared with other nodes because they are on the border of this node's partition. Knowing
|
|---|
| 532 | that, go and create the grids*/
|
|---|
| 533 |
|
|---|
| 534 | /*Create nodes from x,y,z, as well as the spc values on those grids: */
|
|---|
| 535 |
|
|---|
| 536 | /*First fetch data: */
|
|---|
| 537 | if (strcmp(model->meshtype,"3d")==0){
|
|---|
| 538 | ModelFetchData((void**)&model->deadgrids,NULL,NULL,model_handle,"deadgrids","Matrix","Mat");
|
|---|
| 539 | }
|
|---|
| 540 | ModelFetchData((void**)&model->x,NULL,NULL,model_handle,"x","Matrix","Mat");
|
|---|
| 541 | ModelFetchData((void**)&model->y,NULL,NULL,model_handle,"y","Matrix","Mat");
|
|---|
| 542 | ModelFetchData((void**)&model->z,NULL,NULL,model_handle,"z","Matrix","Mat");
|
|---|
| 543 | ModelFetchData((void**)&model->gridonbed,NULL,NULL,model_handle,"gridonbed","Matrix","Mat");
|
|---|
| 544 | ModelFetchData((void**)&model->gridonsurface,NULL,NULL,model_handle,"gridonsurface","Matrix","Mat");
|
|---|
| 545 |
|
|---|
| 546 |
|
|---|
| 547 | /*Get number of dofs per node: */
|
|---|
| 548 | DistributeNumDofs(&node_numdofs,analysis_type);
|
|---|
| 549 |
|
|---|
| 550 | for (i=0;i<model->numberofnodes;i++){
|
|---|
| 551 | #ifdef _PARALLEL_
|
|---|
| 552 | /*keep only this partition's nodes:*/
|
|---|
| 553 | if((my_grids[i]==1)){
|
|---|
| 554 | #endif
|
|---|
| 555 |
|
|---|
| 556 | node_id=i+1; //matlab indexing
|
|---|
| 557 |
|
|---|
| 558 |
|
|---|
| 559 |
|
|---|
| 560 | #ifdef _PARALLEL_
|
|---|
| 561 | if(my_bordergrids[i]>1.0) { //this grid belongs to a partition border
|
|---|
| 562 | node_partitionborder=1;
|
|---|
| 563 | }
|
|---|
| 564 | else{
|
|---|
| 565 | node_partitionborder=0;
|
|---|
| 566 | }
|
|---|
| 567 | #else
|
|---|
| 568 | node_partitionborder=0;
|
|---|
| 569 | #endif
|
|---|
| 570 |
|
|---|
| 571 |
|
|---|
| 572 | node_x[0]=model->x[i];
|
|---|
| 573 | node_x[1]=model->y[i];
|
|---|
| 574 | node_x[2]=model->z[i];
|
|---|
| 575 |
|
|---|
| 576 | node_onbed=(int)model->gridonbed[i];
|
|---|
| 577 | node_onsurface=(int)model->gridonsurface[i];
|
|---|
| 578 |
|
|---|
| 579 | /*Create node using its constructor: */
|
|---|
| 580 | node=new Node(node_id,node_partitionborder,node_numdofs,node_x,node_onbed,node_onsurface);
|
|---|
| 581 |
|
|---|
| 582 | /*set single point constraints.: */
|
|---|
| 583 | if (strcmp(model->meshtype,"3d")==0){
|
|---|
| 584 | /*On a 3d mesh, we may have collapsed grids. Spc all their dofs: */
|
|---|
| 585 | if (model->deadgrids[i]){
|
|---|
| 586 | for(k=0;k<node_numdofs;k++){
|
|---|
| 587 | node->DofInSSet(k);
|
|---|
| 588 | }
|
|---|
| 589 | }
|
|---|
| 590 | }
|
|---|
| 591 | /*Add node to nodes dataset: */
|
|---|
| 592 | nodes->AddObject(node);
|
|---|
| 593 |
|
|---|
| 594 | #ifdef _PARALLEL_
|
|---|
| 595 | } //if((my_grids[i]==1))
|
|---|
| 596 | #endif
|
|---|
| 597 | }
|
|---|
| 598 |
|
|---|
| 599 | /*All our datasets are already order by ids. Set presort flag so that later on, when sorting is requested on these
|
|---|
| 600 | * datasets, it will not be redone: */
|
|---|
| 601 | elements->Presort();
|
|---|
| 602 | nodes->Presort();
|
|---|
| 603 | materials->Presort();
|
|---|
| 604 |
|
|---|
| 605 | /*Clean fetched data: */
|
|---|
| 606 | xfree((void**)&model->deadgrids);
|
|---|
| 607 | xfree((void**)&model->x);
|
|---|
| 608 | xfree((void**)&model->y);
|
|---|
| 609 | xfree((void**)&model->z);
|
|---|
| 610 | xfree((void**)&model->gridonbed);
|
|---|
| 611 | xfree((void**)&model->gridonsurface);
|
|---|
| 612 |
|
|---|
| 613 | cleanup_and_return:
|
|---|
| 614 |
|
|---|
| 615 | /*Assign output pointer: */
|
|---|
| 616 | *pelements=elements;
|
|---|
| 617 | *pnodes=nodes;
|
|---|
| 618 | *pmaterials=materials;
|
|---|
| 619 |
|
|---|
| 620 | /*Keep partitioning information into model*/
|
|---|
| 621 | model->epart=epart;
|
|---|
| 622 | model->my_grids=my_grids;
|
|---|
| 623 | model->my_bordergrids=my_bordergrids;
|
|---|
| 624 |
|
|---|
| 625 | /*Free ressources:*/
|
|---|
| 626 | #ifdef _PARALLEL_
|
|---|
| 627 | xfree((void**)&all_numgrids);
|
|---|
| 628 | VecFree(&gridborder);
|
|---|
| 629 | #endif
|
|---|
| 630 |
|
|---|
| 631 | return noerr;
|
|---|
| 632 |
|
|---|
| 633 | }
|
|---|