source: issm/trunk-jpl/src/wrappers/python/io/FetchPythonData.cpp@ 23708

Last change on this file since 23708 was 23708, checked in by bdef, 6 years ago

CHG:python 3 compatibility
File size: 31.9 KB
Line 
1/*\file FetchData.cpp:
2 * \brief: general I/O interface to fetch data in python
3 */
4
5#ifdef HAVE_CONFIG_H
6#include <config.h>
7#else
8#error "Cannot compile with HAVE_CONFIG_H symbol! run configure first!"
9#endif
10
11#define PY_ARRAY_UNIQUE_SYMBOL PythonIOSymbol
12#define NO_IMPORT
13
14#include "./pythonio.h"
15#include "../../c/shared/shared.h"
16
17/*Primitive data types*/
18/*FUNCTION FetchData(double* pscalar,PyObject* py_float){{{*/
19void FetchData(double* pscalar,PyObject* py_float){
20
21 double dscalar;
22
23 /*return internal value: */
24 #if _PYTHON_MAJOR_ == 3
25 if (PyFloat_Check(py_float))
26 dscalar=PyFloat_AsDouble(py_float);
27 else if (PyLong_Check(py_float))
28 dscalar=(double)PyLong_AsLong(py_float);
29 else if (PyBool_Check(py_float))
30 dscalar=(double)PyLong_AsLong(py_float);
31 else if (PyTuple_Check(py_float) && (int)PyTuple_Size(py_float)==1)
32 FetchData(&dscalar,PyTuple_GetItem(py_float,(Py_ssize_t)0));
33 else if (PyList_Check(py_float) && (int)PyList_Size(py_float)==1)
34 FetchData(&dscalar,PyList_GetItem(py_float,(Py_ssize_t)0));
35 else
36 _error_("unrecognized float type in input!");
37
38 #else
39 if (PyFloat_Check(py_float))
40 dscalar=PyFloat_AsDouble(py_float);
41 else if (PyLong_Check(py_float))
42 dscalar=PyLong_AsDouble(py_float);
43 else if (PyInt_Check(py_float))
44 dscalar=(double)PyInt_AsLong(py_float);
45 else if (PyBool_Check(py_float))
46 dscalar=(double)PyLong_AsLong(py_float);
47 else if (PyTuple_Check(py_float) && (int)PyTuple_Size(py_float)==1)
48 FetchData(&dscalar,PyTuple_GetItem(py_float,(Py_ssize_t)0));
49 else if (PyList_Check(py_float) && (int)PyList_Size(py_float)==1)
50 FetchData(&dscalar,PyList_GetItem(py_float,(Py_ssize_t)0));
51 else
52 _error_("unrecognized float type in input!");
53 #endif
54 /*output: */
55 *pscalar=dscalar;
56}
57/*}}}*/
58/*FUNCTION FetchData(float* pscalar,PyObject* py_float){{{*/
59void FetchData(float* pscalar,PyObject* py_float){
60
61 float fscalar;
62
63 /*return internal value: */
64 #if _PYTHON_MAJOR_ == 3
65 if (PyFloat_Check(py_float))
66 fscalar=PyFloat_AsDouble(py_float);
67 else if (PyLong_Check(py_float))
68 fscalar=(float)PyLong_AsLong(py_float);
69 else if (PyBool_Check(py_float))
70 fscalar=(float)PyLong_AsLong(py_float);
71 else if (PyTuple_Check(py_float) && (int)PyTuple_Size(py_float)==1)
72 FetchData(&fscalar,PyTuple_GetItem(py_float,(Py_ssize_t)0));
73 else if (PyList_Check(py_float) && (int)PyList_Size(py_float)==1)
74 FetchData(&fscalar,PyList_GetItem(py_float,(Py_ssize_t)0));
75 else
76 _error_("unrecognized float type in input!");
77 #else
78 if (PyFloat_Check(py_float))
79 fscalar=PyFloat_AsDouble(py_float);
80 else if (PyLong_Check(py_float))
81 fscalar=(float)PyLong_AsDouble(py_float);
82 else if (PyInt_Check(py_float))
83 fscalar=(float)PyInt_AsLong(py_float);
84 else if (PyBool_Check(py_float))
85 fscalar=(float)PyLong_AsLong(py_float);
86 else if (PyTuple_Check(py_float) && (int)PyTuple_Size(py_float)==1)
87 FetchData(&fscalar,PyTuple_GetItem(py_float,(Py_ssize_t)0));
88 else if (PyList_Check(py_float) && (int)PyList_Size(py_float)==1)
89 FetchData(&fscalar,PyList_GetItem(py_float,(Py_ssize_t)0));
90 else
91 _error_("unrecognized float type in input!");
92 #endif
93 /*output: */
94 *pscalar=fscalar;
95}
96/*}}}*/
97/*FUNCTION FetchData(int* pscalar,PyObject* py_long){{{*/
98void FetchData(int* pscalar, PyObject* py_long){
99
100 int iscalar;
101
102 /*return internal value: */
103 #if _PYTHON_MAJOR_ == 3
104 if (PyLong_Check(py_long))
105 iscalar=(int)PyLong_AsLong(py_long);
106 else if (PyFloat_Check(py_long))
107 iscalar=(int)PyFloat_AsDouble(py_long);
108 else if (PyBool_Check(py_long))
109 iscalar=(int)PyLong_AsLong(py_long);
110 else if (PyTuple_Check(py_long) && (int)PyTuple_Size(py_long)==1)
111 FetchData(&iscalar,PyTuple_GetItem(py_long,(Py_ssize_t)0));
112 else if (PyList_Check(py_long) && (int)PyList_Size(py_long)==1)
113 FetchData(&iscalar,PyList_GetItem(py_long,(Py_ssize_t)0));
114 else
115 _error_("unrecognized long type in input!");
116
117 #else
118 if (PyLong_Check(py_long))
119 iscalar=(int)PyLong_AsLong(py_long);
120 else if (PyInt_Check(py_long))
121 iscalar=(int)PyInt_AsLong(py_long);
122 else if (PyFloat_Check(py_long))
123 iscalar=(int)PyFloat_AsDouble(py_long);
124 else if (PyBool_Check(py_long))
125 iscalar=(int)PyLong_AsLong(py_long);
126 else if (PyTuple_Check(py_long) && (int)PyTuple_Size(py_long)==1)
127 FetchData(&iscalar,PyTuple_GetItem(py_long,(Py_ssize_t)0));
128 else if (PyList_Check(py_long) && (int)PyList_Size(py_long)==1)
129 FetchData(&iscalar,PyList_GetItem(py_long,(Py_ssize_t)0));
130 else
131 _error_("unrecognized long type in input!");
132 #endif
133 /*output: */
134 *pscalar=iscalar;
135}
136/*}}}*/
137/*FUNCTION FetchData(bool* pscalar,PyObject* py_boolean){{{*/
138void FetchData(bool* pscalar,PyObject* py_boolean){
139
140 bool bscalar;
141
142 /*return internal value: */
143 #if _PYTHON_MAJOR_ == 3
144 if (PyBool_Check(py_boolean))
145 bscalar=(bool)PyLong_AsLong(py_boolean);
146 else if (PyLong_Check(py_boolean))
147 bscalar=(bool)PyLong_AsLong(py_boolean);
148 else if (PyLong_Check(py_boolean))
149 bscalar=(bool)PyLong_AsLong(py_boolean);
150 else if (PyTuple_Check(py_boolean) && (int)PyTuple_Size(py_boolean)==1)
151 FetchData(&bscalar,PyTuple_GetItem(py_boolean,(Py_ssize_t)0));
152 else if (PyList_Check(py_boolean) && (int)PyList_Size(py_boolean)==1)
153 FetchData(&bscalar,PyList_GetItem(py_boolean,(Py_ssize_t)0));
154 else
155 _error_("unrecognized boolean type in input!");
156
157 #else
158 if (PyBool_Check(py_boolean))
159 bscalar=(bool)PyLong_AsLong(py_boolean);
160 else if (PyLong_Check(py_boolean))
161 bscalar=(bool)PyLong_AsLong(py_boolean);
162 else if (PyLong_Check(py_boolean))
163 bscalar=(bool)PyLong_AsLong(py_boolean);
164 else if (PyInt_Check(py_boolean))
165 bscalar=(bool)PyInt_AsLong(py_boolean);
166 else if (PyTuple_Check(py_boolean) && (int)PyTuple_Size(py_boolean)==1)
167 FetchData(&bscalar,PyTuple_GetItem(py_boolean,(Py_ssize_t)0));
168 else if (PyList_Check(py_boolean) && (int)PyList_Size(py_boolean)==1)
169 FetchData(&bscalar,PyList_GetItem(py_boolean,(Py_ssize_t)0));
170 else
171 _error_("unrecognized boolean type in input!");
172 #endif
173 /*output: */
174 *pscalar=bscalar;
175}
176/*}}}*/
177/*FUNCTION FetchData(double** pmatrix,int* pM, int* pN, PyObject* py_matrix){{{*/
178void FetchData(double** pmatrix,int* pM,int *pN,PyObject* py_matrix){
179
180 /*output: */
181 double* dmatrix=NULL;
182 double* matrix=NULL;
183 int M=0;
184 int N=0;
185 int ndim;
186 npy_intp* dims=NULL;
187
188 /*intermediary:*/
189 long* lmatrix=NULL;
190 bool* bmatrix=NULL;
191 int i;
192 PyObject* py_matrix2=NULL;
193
194 if (PyArray_Check((PyArrayObject*)py_matrix)) {
195 /*retrieve dimensions: */
196 ndim=PyArray_NDIM((const PyArrayObject*)py_matrix);
197 if (ndim==2) {
198 dims=PyArray_DIMS((PyArrayObject*)py_matrix);
199 M=dims[0]; N=dims[1];
200 }
201 else if (ndim==1) {
202 dims=PyArray_DIMS((PyArrayObject*)py_matrix);
203 M=dims[0]; N=1;
204 }
205 else
206 _error_("expecting an MxN matrix or M vector in input!");
207
208 if (M && N) {
209 if (!PyArray_ISCONTIGUOUS((PyArrayObject*)py_matrix)) {
210 py_matrix2=PyArray_ContiguousFromAny(py_matrix,NPY_DOUBLE,ndim,ndim);
211 py_matrix=py_matrix2;
212 }
213
214 if (PyArray_TYPE((PyArrayObject*)py_matrix) == NPY_DOUBLE) {
215 /*retrieve internal value: */
216 dmatrix=(double*)PyArray_DATA((PyArrayObject*)py_matrix);
217
218 /*copy matrix: */
219 matrix=xNew<double>(M*N);
220// if (PyArray_ISCONTIGUOUS((PyArrayObject*)py_matrix)) {
221 memcpy(matrix,dmatrix,(M*N)*sizeof(double));
222// }
223
224// else {
225// int j,k,ipt=0;
226// int mstride,nstride;
227// mstride=(int)PyArray_STRIDE((PyArrayObject*)py_matrix,0)/PyArray_ITEMSIZE((PyArrayObject*)py_matrix);
228// if (ndim > 1)
229// nstride=(int)PyArray_STRIDE((PyArrayObject*)py_matrix,1)/PyArray_ITEMSIZE((PyArrayObject*)py_matrix);
230// else
231// nstride=1;
232// for (i=0; i<M; i++) {
233// k=i*mstride;
234// for (j=0; j<N; j++) {
235// matrix[ipt++]=dmatrix[k];
236// k+=nstride;
237// }
238// }
239// }
240
241 }
242
243 else if (PyArray_TYPE((PyArrayObject*)py_matrix) == NPY_LONG) {
244 /*retrieve internal value: */
245 lmatrix=(long*)PyArray_DATA((PyArrayObject*)py_matrix);
246
247 /*transform into double matrix: */
248 matrix=xNew<double>(M*N);
249 for(i=0;i<M*N;i++)matrix[i]=(double)lmatrix[i];
250 }
251
252 else if (PyArray_TYPE((PyArrayObject*)py_matrix) == NPY_BOOL) {
253 /*retrieve internal value: */
254 bmatrix=(bool*)PyArray_DATA((PyArrayObject*)py_matrix);
255
256 /*transform into double matrix: */
257 matrix=xNew<double>(M*N);
258 for(i=0;i<M*N;i++)matrix[i]=(double)bmatrix[i];
259 }
260
261 else
262 _error_("unrecognized double pyarray type in input!");
263
264 //if (py_matrix2) delete(py_matrix2); Not doing this for now, seems to be creating a segfault!
265 }
266 else
267 matrix=NULL;
268 }
269
270 else {
271 M=1;
272 N=1;
273 matrix=xNew<double>(M*N);
274 FetchData(&(matrix[0]),py_matrix);
275 }
276
277 /*output: */
278 if(pM)*pM=M;
279 if(pN)*pN=N;
280 if(pmatrix)*pmatrix=matrix;
281}
282/*}}}*/
283/*FUNCTION FetchData(int** pmatrix,int* pM, int* pN, PyObject* py_matrix){{{*/
284void FetchData(int** pmatrix,int* pM,int *pN,PyObject* py_matrix){
285
286 /*output: */
287 int* matrix=NULL;
288 int M=0;
289 int N=0;
290 int ndim;
291 npy_intp* dims=NULL;
292
293 /*intermediary:*/
294 double* dmatrix=NULL;
295 long* lmatrix=NULL;
296 bool* bmatrix=NULL;
297 int i;
298 PyObject* py_matrix2=NULL;
299
300 if (PyArray_Check((PyArrayObject*)py_matrix)) {
301 /*retrieve dimensions: */
302 ndim=PyArray_NDIM((const PyArrayObject*)py_matrix);
303 if (ndim==2) {
304 dims=PyArray_DIMS((PyArrayObject*)py_matrix);
305 M=dims[0]; N=dims[1];
306 }
307 else if (ndim==1) {
308 dims=PyArray_DIMS((PyArrayObject*)py_matrix);
309 M=dims[0]; N=1;
310 }
311 else
312 _error_("expecting an MxN matrix or M vector in input!");
313
314 if (M && N) {
315 if (!PyArray_ISCONTIGUOUS((PyArrayObject*)py_matrix)) {
316 py_matrix2=PyArray_ContiguousFromAny(py_matrix,NPY_LONG,ndim,ndim);
317 py_matrix=py_matrix2;
318 }
319
320 if (PyArray_TYPE((PyArrayObject*)py_matrix) == NPY_DOUBLE) {
321 /*retrieve internal value: */
322 dmatrix=(double*)PyArray_DATA((PyArrayObject*)py_matrix);
323
324 /*transform into integer matrix: */
325 matrix=xNew<int>(M*N);
326 for(i=0;i<M*N;i++)matrix[i]=(int)dmatrix[i];
327 }
328
329 else if (PyArray_TYPE((PyArrayObject*)py_matrix) == NPY_LONG) {
330 /*retrieve internal value: */
331 lmatrix=(long*)PyArray_DATA((PyArrayObject*)py_matrix);
332
333 /*transform into integer matrix: */
334 matrix=xNew<int>(M*N);
335 for(i=0;i<M*N;i++)matrix[i]=(int)lmatrix[i];
336 }
337
338 else if (PyArray_TYPE((PyArrayObject*)py_matrix) == NPY_BOOL) {
339 /*retrieve internal value: */
340 bmatrix=(bool*)PyArray_DATA((PyArrayObject*)py_matrix);
341
342 /*transform into integer matrix: */
343 matrix=xNew<int>(M*N);
344 for(i=0;i<M*N;i++)matrix[i]=(int)bmatrix[i];
345 }
346
347 else
348 _error_("unrecognized int pyarray type in input!");
349
350 /* These lines are causing a segfault
351 if (py_matrix2)
352 delete(py_matrix2);
353 */
354 }
355 else
356 matrix=NULL;
357 }
358
359 else {
360 M=1;
361 N=1;
362 matrix=xNew<int>(M*N);
363 FetchData(&(matrix[0]),py_matrix);
364 }
365
366 /*output: */
367 if(pM)*pM=M;
368 if(pN)*pN=N;
369 if(pmatrix)*pmatrix=matrix;
370}
371/*}}}*/
372/*FUNCTION FetchData(bool** pmatrix,int* pM, int* pN, PyObject* py_matrix){{{*/
373void FetchData(bool** pmatrix,int* pM,int *pN,PyObject* py_matrix){
374
375 /*output: */
376 bool* bmatrix=NULL;
377 bool* matrix=NULL;
378 int M=0;
379 int N=0;
380 int ndim;
381 npy_intp* dims=NULL;
382
383 /*intermediary:*/
384 double* dmatrix=NULL;
385 long* lmatrix=NULL;
386 int i;
387 PyObject* py_matrix2=NULL;
388
389 if (PyArray_Check((PyArrayObject*)py_matrix)) {
390 /*retrieve dimensions: */
391 ndim=PyArray_NDIM((const PyArrayObject*)py_matrix);
392 if (ndim==2) {
393 dims=PyArray_DIMS((PyArrayObject*)py_matrix);
394 M=dims[0]; N=dims[1];
395 }
396 else if (ndim==1) {
397 dims=PyArray_DIMS((PyArrayObject*)py_matrix);
398 M=dims[0]; N=1;
399 }
400 else
401 _error_("expecting an MxN matrix or M vector in input!");
402
403 if (M && N) {
404 if (!PyArray_ISCONTIGUOUS((PyArrayObject*)py_matrix)) {
405 py_matrix2=PyArray_ContiguousFromAny(py_matrix,NPY_BOOL,ndim,ndim);
406 py_matrix=py_matrix2;
407 }
408
409 if (PyArray_TYPE((PyArrayObject*)py_matrix) == NPY_DOUBLE) {
410 /*retrieve internal value: */
411 dmatrix=(double*)PyArray_DATA((PyArrayObject*)py_matrix);
412
413 /*transform into bool matrix: */
414 matrix=xNew<bool>(M*N);
415 for(i=0;i<M*N;i++)matrix[i]=(bool)dmatrix[i];
416 }
417
418 else if (PyArray_TYPE((PyArrayObject*)py_matrix) == NPY_LONG) {
419 /*retrieve internal value: */
420 lmatrix=(long*)PyArray_DATA((PyArrayObject*)py_matrix);
421
422 /*transform into bool matrix: */
423 matrix=xNew<bool>(M*N);
424 for(i=0;i<M*N;i++)matrix[i]=(bool)lmatrix[i];
425 }
426
427 else if (PyArray_TYPE((PyArrayObject*)py_matrix) == NPY_BOOL) {
428 /*retrieve internal value: */
429 bmatrix=(bool*)PyArray_DATA((PyArrayObject*)py_matrix);
430
431 /*copy matrix: */
432 matrix=xNew<bool>(M*N);
433 memcpy(matrix,bmatrix,(M*N)*sizeof(bool));
434 }
435
436 else
437 _error_("unrecognized bool pyarray type in input!");
438
439 if (py_matrix2)
440 delete(py_matrix2);
441 }
442 else
443 matrix=NULL;
444 }
445
446 else {
447 M=1;
448 N=1;
449 matrix=xNew<bool>(M*N);
450 FetchData(&(matrix[0]),py_matrix);
451 }
452
453 /*output: */
454 if(pM)*pM=M;
455 if(pN)*pN=N;
456 if(pmatrix)*pmatrix=matrix;
457}
458/*}}}*/
459/*FUNCTION FetchData(double** pvector,int* pM, PyObject* py_vector){{{*/
460void FetchData(double** pvector,int* pM,PyObject* py_vector){
461
462 /*output: */
463 double* dvector=NULL;
464 double* vector=NULL;
465 int M=0;
466 int ndim;
467 npy_intp* dims=NULL;
468
469 /*intermediary:*/
470 long* lvector=NULL;
471 bool* bvector=NULL;
472 int i;
473 PyObject* py_vector2=NULL;
474
475 if (PyArray_Check((PyArrayObject*)py_vector)) {
476 /*retrieve dimensions: */
477 ndim=PyArray_NDIM((const PyArrayObject*)py_vector);
478 if (ndim==1) {
479 dims=PyArray_DIMS((PyArrayObject*)py_vector);
480 M=dims[0];
481 }
482 else if (ndim==2) {
483 dims=PyArray_DIMS((PyArrayObject*)py_vector);
484 if (dims[1]==1)
485 M=dims[0];
486 else
487 _error_("expecting an Mx1 matrix or M vector in input!");
488 }
489 else
490 _error_("expecting an Mx1 matrix or M vector in input!");
491
492 if (M) {
493 if (!PyArray_ISCONTIGUOUS((PyArrayObject*)py_vector)) {
494 py_vector2=PyArray_ContiguousFromAny(py_vector,NPY_DOUBLE,ndim,ndim);
495 py_vector=py_vector2;
496 }
497
498 if (PyArray_TYPE((PyArrayObject*)py_vector) == NPY_DOUBLE) {
499 /*retrieve internal value: */
500 dvector=(double*)PyArray_DATA((PyArrayObject*)py_vector);
501
502 /*copy vector: */
503 vector=xNew<double>(M);
504 memcpy(vector,dvector,(M)*sizeof(double));
505 }
506
507 else if (PyArray_TYPE((PyArrayObject*)py_vector) == NPY_LONG) {
508 /*retrieve internal value: */
509 lvector=(long*)PyArray_DATA((PyArrayObject*)py_vector);
510
511 /*transform into double vector: */
512 vector=xNew<double>(M);
513 for(i=0;i<M;i++)vector[i]=(double)lvector[i];
514 }
515
516 else if (PyArray_TYPE((PyArrayObject*)py_vector) == NPY_BOOL) {
517 /*retrieve internal value: */
518 bvector=(bool*)PyArray_DATA((PyArrayObject*)py_vector);
519
520 /*transform into double vector: */
521 vector=xNew<double>(M);
522 for(i=0;i<M;i++)vector[i]=(double)bvector[i];
523 }
524
525 else
526 _error_("unrecognized double pyarray type in input!");
527
528 /* Causing a seg fault.
529 if (py_vector2)
530 delete(py_vector2);
531 */
532 }
533 else
534 vector=NULL;
535 }
536
537 else {
538 M=1;
539 vector=xNew<double>(M);
540 FetchData(&(vector[0]),py_vector);
541 }
542
543 /*output: */
544 if(pM)*pM=M;
545 if(pvector)*pvector=vector;
546}
547/*}}}*/
548/*FUNCTION FetchData(float** pvector,int* pM, PyObject* py_vector){{{*/
549void FetchData(float** pvector,int* pM,PyObject* py_vector){
550
551 /*output: */
552 float* vector=NULL;
553 int M=0;
554 int ndim;
555 npy_intp* dims=NULL;
556
557 /*intermediary:*/
558 long* lvector=NULL;
559 bool* bvector=NULL;
560 double* dvector=NULL;
561 int i;
562 PyObject* py_vector2=NULL;
563
564 if (PyArray_Check((PyArrayObject*)py_vector)) {
565 /*retrieve dimensions: */
566 ndim=PyArray_NDIM((const PyArrayObject*)py_vector);
567 if (ndim==1) {
568 dims=PyArray_DIMS((PyArrayObject*)py_vector);
569 M=dims[0];
570 }
571 else if (ndim==2) {
572 dims=PyArray_DIMS((PyArrayObject*)py_vector);
573 if (dims[1]==1)
574 M=dims[0];
575 else
576 _error_("expecting an Mx1 matrix or M vector in input!");
577 }
578 else
579 _error_("expecting an Mx1 matrix or M vector in input!");
580
581 if (M) {
582 if (!PyArray_ISCONTIGUOUS((PyArrayObject*)py_vector)) {
583 py_vector2=PyArray_ContiguousFromAny(py_vector,NPY_LONG,ndim,ndim);
584 py_vector=py_vector2;
585 }
586
587 if (PyArray_TYPE((PyArrayObject*)py_vector) == NPY_DOUBLE) {
588 /*retrieve internal value: */
589 dvector=(double*)PyArray_DATA((PyArrayObject*)py_vector);
590
591 /*transform into int vector: */
592 vector=xNew<float>(M);
593 for(i=0;i<M;i++)vector[i]=(float)dvector[i];
594 }
595
596 else if (PyArray_TYPE((PyArrayObject*)py_vector) == NPY_LONG) {
597 /*retrieve internal value: */
598 lvector=(long*)PyArray_DATA((PyArrayObject*)py_vector);
599
600 /*transform into int vector: */
601 vector=xNew<float>(M);
602 for(i=0;i<M;i++)vector[i]=(float)lvector[i];
603 }
604
605 else if (PyArray_TYPE((PyArrayObject*)py_vector) == NPY_BOOL) {
606 /*retrieve internal value: */
607 bvector=(bool*)PyArray_DATA((PyArrayObject*)py_vector);
608
609 /*transform into int vector: */
610 vector=xNew<float>(M);
611 for(i=0;i<M;i++)vector[i]=(float)bvector[i];
612 }
613
614 else
615 _error_("unrecognized int pyarray type in input!");
616
617 if(py_vector2) delete(py_vector2);
618 }
619 else
620 vector=NULL;
621 }
622 else{
623 M=1;
624 vector=xNew<float>(M);
625 FetchData(&(vector[0]),py_vector);
626 }
627
628 /*output: */
629 if(pM)*pM=M;
630 if(pvector)*pvector=vector;
631}
632/*}}}*/
633/*FUNCTION FetchData(int** pvector,int* pM, PyObject* py_vector){{{*/
634void FetchData(int** pvector,int* pM,PyObject* py_vector){
635
636 /*output: */
637 int* vector=NULL;
638 int M=0;
639 int ndim;
640 npy_intp* dims=NULL;
641
642 /*intermediary:*/
643 long* lvector=NULL;
644 bool* bvector=NULL;
645 double* dvector=NULL;
646 int i;
647 PyObject* py_vector2=NULL;
648
649 if (PyArray_Check((PyArrayObject*)py_vector)) {
650 /*retrieve dimensions: */
651 ndim=PyArray_NDIM((const PyArrayObject*)py_vector);
652 if (ndim==1) {
653 dims=PyArray_DIMS((PyArrayObject*)py_vector);
654 M=dims[0];
655 }
656 else if (ndim==2) {
657 dims=PyArray_DIMS((PyArrayObject*)py_vector);
658 if (dims[1]==1)
659 M=dims[0];
660 else
661 _error_("expecting an Mx1 matrix or M vector in input!");
662 }
663 else
664 _error_("expecting an Mx1 matrix or M vector in input!");
665
666 if (M) {
667 if (!PyArray_ISCONTIGUOUS((PyArrayObject*)py_vector)) {
668 py_vector2=PyArray_ContiguousFromAny(py_vector,NPY_LONG,ndim,ndim);
669 py_vector=py_vector2;
670 }
671
672 if (PyArray_TYPE((PyArrayObject*)py_vector) == NPY_DOUBLE) {
673 /*retrieve internal value: */
674 dvector=(double*)PyArray_DATA((PyArrayObject*)py_vector);
675
676 /*transform into int vector: */
677 vector=xNew<int>(M);
678 for(i=0;i<M;i++)vector[i]=(int)dvector[i];
679 }
680
681 else if (PyArray_TYPE((PyArrayObject*)py_vector) == NPY_LONG) {
682 /*retrieve internal value: */
683 lvector=(long*)PyArray_DATA((PyArrayObject*)py_vector);
684
685 /*transform into int vector: */
686 vector=xNew<int>(M);
687 for(i=0;i<M;i++)vector[i]=(int)lvector[i];
688 }
689
690 else if (PyArray_TYPE((PyArrayObject*)py_vector) == NPY_BOOL) {
691 /*retrieve internal value: */
692 bvector=(bool*)PyArray_DATA((PyArrayObject*)py_vector);
693
694 /*transform into int vector: */
695 vector=xNew<int>(M);
696 for(i=0;i<M;i++)vector[i]=(int)bvector[i];
697 }
698
699 else
700 _error_("unrecognized int pyarray type in input!");
701
702 if (py_vector2)
703 delete(py_vector2);
704 }
705 else
706 vector=NULL;
707 }
708
709 else {
710 M=1;
711 vector=xNew<int>(M);
712 FetchData(&(vector[0]),py_vector);
713 }
714
715 /*output: */
716 if(pM)*pM=M;
717 if(pvector)*pvector=vector;
718}
719/*}}}*/
720/*FUNCTION FetchData(bool** pvector,int* pM, PyObject* py_vector){{{*/
721void FetchData(bool** pvector,int* pM,PyObject* py_vector){
722
723 /*output: */
724 bool* bvector=NULL;
725 bool* vector=NULL;
726 int M=0;
727 int ndim;
728 npy_intp* dims=NULL;
729
730 /*intermediary:*/
731 double* dvector=NULL;
732 long* lvector=NULL;
733 int i;
734 PyObject* py_vector2=NULL;
735
736 if (PyArray_Check((PyArrayObject*)py_vector)) {
737 /*retrieve dimensions: */
738 ndim=PyArray_NDIM((const PyArrayObject*)py_vector);
739 if (ndim==1) {
740 dims=PyArray_DIMS((PyArrayObject*)py_vector);
741 M=dims[0];
742 }
743 else if (ndim==2) {
744 dims=PyArray_DIMS((PyArrayObject*)py_vector);
745 if (dims[1]==1)
746 M=dims[0];
747 else
748 _error_("expecting an Mx1 matrix or M vector in input!");
749 }
750 else
751 _error_("expecting an Mx1 matrix or M vector in input!");
752
753 if (M) {
754 if (!PyArray_ISCONTIGUOUS((PyArrayObject*)py_vector)) {
755 py_vector2=PyArray_ContiguousFromAny(py_vector,NPY_BOOL,ndim,ndim);
756 py_vector=py_vector2;
757 }
758
759 if (PyArray_TYPE((PyArrayObject*)py_vector) == NPY_DOUBLE) {
760 /*retrieve internal value: */
761 dvector=(double*)PyArray_DATA((PyArrayObject*)py_vector);
762
763 /*transform into bool vector: */
764 vector=xNew<bool>(M);
765 for(i=0;i<M;i++)vector[i]=(bool)dvector[i];
766 }
767
768 else if (PyArray_TYPE((PyArrayObject*)py_vector) == NPY_LONG) {
769 /*retrieve internal value: */
770 lvector=(long*)PyArray_DATA((PyArrayObject*)py_vector);
771
772 /*transform into bool vector: */
773 vector=xNew<bool>(M);
774 for(i=0;i<M;i++)vector[i]=(bool)lvector[i];
775 }
776
777 else if (PyArray_TYPE((PyArrayObject*)py_vector) == NPY_BOOL) {
778 /*retrieve internal value: */
779 bvector=(bool*)PyArray_DATA((PyArrayObject*)py_vector);
780
781 /*copy vector: */
782 vector=xNew<bool>(M);
783 memcpy(vector,bvector,(M)*sizeof(bool));
784 }
785
786 else
787 _error_("unrecognized bool pyarray type in input!");
788
789 if (py_vector2)
790 delete(py_vector2);
791 }
792 else
793 vector=NULL;
794 }
795
796 else {
797 M=1;
798 vector=xNew<bool>(M);
799 FetchData(&(vector[0]),py_vector);
800 }
801
802 /*output: */
803 if(pM)*pM=M;
804 if(pvector)*pvector=vector;
805}
806/*}}}*/
807
808/*ISSM objects*/
809/*FUNCTION FetchData(BamgGeom** pbamggeom,PyObject* py_dict){{{*/
810void FetchData(BamgGeom** pbamggeom,PyObject* py_dict){
811
812 /*Initialize output*/
813 BamgGeom* bamggeom=new BamgGeom();
814
815 /*Fetch all fields*/
816 FetchData(&bamggeom->Vertices,&bamggeom->VerticesSize[0],&bamggeom->VerticesSize[1],PyDict_GetItemString(py_dict,"Vertices"));
817 FetchData(&bamggeom->Edges, &bamggeom->EdgesSize[0], &bamggeom->EdgesSize[1], PyDict_GetItemString(py_dict,"Edges"));
818 FetchData(&bamggeom->Corners, &bamggeom->CornersSize[0], &bamggeom->CornersSize[1], PyDict_GetItemString(py_dict,"Corners"));
819 FetchData(&bamggeom->RequiredVertices,&bamggeom->RequiredVerticesSize[0],&bamggeom->RequiredVerticesSize[1],PyDict_GetItemString(py_dict,"RequiredVertices"));
820 FetchData(&bamggeom->RequiredEdges, &bamggeom->RequiredEdgesSize[0], &bamggeom->RequiredEdgesSize[1], PyDict_GetItemString(py_dict,"RequiredEdges"));
821 FetchData(&bamggeom->CrackedEdges,&bamggeom->CrackedEdgesSize[0],&bamggeom->CrackedEdgesSize[1],PyDict_GetItemString(py_dict,"CrackedEdges"));
822 FetchData(&bamggeom->SubDomains,&bamggeom->SubDomainsSize[0],&bamggeom->SubDomainsSize[1],PyDict_GetItemString(py_dict,"SubDomains"));
823
824 /*Assign output pointers:*/
825 *pbamggeom=bamggeom;
826}
827/*}}}*/
828/*FUNCTION FetchData(BamgMesh** pbamgmesh,PyObject* py_dict){{{*/
829void FetchData(BamgMesh** pbamgmesh,PyObject* py_dict){
830
831 /*Initialize output*/
832 BamgMesh* bamgmesh=new BamgMesh();
833
834 /*Fetch all fields*/
835 FetchData(&bamgmesh->Vertices,&bamgmesh->VerticesSize[0],&bamgmesh->VerticesSize[1],PyDict_GetItemString(py_dict,"Vertices"));
836 FetchData(&bamgmesh->Edges, &bamgmesh->EdgesSize[0], &bamgmesh->EdgesSize[1], PyDict_GetItemString(py_dict,"Edges"));
837 FetchData(&bamgmesh->Triangles, &bamgmesh->TrianglesSize[0], &bamgmesh->TrianglesSize[1], PyDict_GetItemString(py_dict,"Triangles"));
838 FetchData(&bamgmesh->CrackedEdges,&bamgmesh->CrackedEdgesSize[0],&bamgmesh->CrackedEdgesSize[1],PyDict_GetItemString(py_dict,"CrackedEdges"));
839 FetchData(&bamgmesh->VerticesOnGeomEdge,&bamgmesh->VerticesOnGeomEdgeSize[0],&bamgmesh->VerticesOnGeomEdgeSize[1],PyDict_GetItemString(py_dict,"VerticesOnGeomEdge"));
840 FetchData(&bamgmesh->VerticesOnGeomVertex,&bamgmesh->VerticesOnGeomVertexSize[0],&bamgmesh->VerticesOnGeomVertexSize[1],PyDict_GetItemString(py_dict,"VerticesOnGeomVertex"));
841 FetchData(&bamgmesh->EdgesOnGeomEdge, &bamgmesh->EdgesOnGeomEdgeSize[0], &bamgmesh->EdgesOnGeomEdgeSize[1], PyDict_GetItemString(py_dict,"EdgesOnGeomEdge"));
842 FetchData(&bamgmesh->IssmSegments,&bamgmesh->IssmSegmentsSize[0],&bamgmesh->IssmSegmentsSize[1],PyDict_GetItemString(py_dict,"IssmSegments"));
843
844 /*Assign output pointers:*/
845 *pbamgmesh=bamgmesh;
846}
847/*}}}*/
848/*FUNCTION FetchData(BamgOpts** pbamgopts,PyObject* py_dict){{{*/
849void FetchData(BamgOpts** pbamgopts,PyObject* py_dict){
850
851 /*Initialize output*/
852 BamgOpts* bamgopts=new BamgOpts();
853
854 /*Fetch all fields*/
855 FetchData(&bamgopts->anisomax,PyDict_GetItemString(py_dict,"anisomax"));
856 FetchData(&bamgopts->cutoff,PyDict_GetItemString(py_dict,"cutoff"));
857 FetchData(&bamgopts->coeff,PyDict_GetItemString(py_dict,"coeff"));
858 FetchData(&bamgopts->errg,PyDict_GetItemString(py_dict,"errg"));
859 FetchData(&bamgopts->gradation,PyDict_GetItemString(py_dict,"gradation"));
860 FetchData(&bamgopts->Hessiantype,PyDict_GetItemString(py_dict,"Hessiantype"));
861 FetchData(&bamgopts->maxnbv,PyDict_GetItemString(py_dict,"maxnbv"));
862 FetchData(&bamgopts->maxsubdiv,PyDict_GetItemString(py_dict,"maxsubdiv"));
863 FetchData(&bamgopts->Metrictype,PyDict_GetItemString(py_dict,"Metrictype"));
864 FetchData(&bamgopts->nbjacobi,PyDict_GetItemString(py_dict,"nbjacobi"));
865 FetchData(&bamgopts->nbsmooth,PyDict_GetItemString(py_dict,"nbsmooth"));
866 FetchData(&bamgopts->omega,PyDict_GetItemString(py_dict,"omega"));
867 FetchData(&bamgopts->power,PyDict_GetItemString(py_dict,"power"));
868 FetchData(&bamgopts->verbose,PyDict_GetItemString(py_dict,"verbose"));
869
870 FetchData(&bamgopts->Crack,PyDict_GetItemString(py_dict,"Crack"));
871 FetchData(&bamgopts->KeepVertices,PyDict_GetItemString(py_dict,"KeepVertices"));
872 FetchData(&bamgopts->splitcorners,PyDict_GetItemString(py_dict,"splitcorners"));
873
874 FetchData(&bamgopts->hmin,PyDict_GetItemString(py_dict,"hmin"));
875 FetchData(&bamgopts->hmax,PyDict_GetItemString(py_dict,"hmax"));
876 FetchData(&bamgopts->hminVertices,&bamgopts->hminVerticesSize[0],&bamgopts->hminVerticesSize[1],PyDict_GetItemString(py_dict,"hminVertices"));
877 FetchData(&bamgopts->hmaxVertices,&bamgopts->hmaxVerticesSize[0],&bamgopts->hmaxVerticesSize[1],PyDict_GetItemString(py_dict,"hmaxVertices"));
878 FetchData(&bamgopts->hVertices,&bamgopts->hVerticesSize[0],&bamgopts->hVerticesSize[1],PyDict_GetItemString(py_dict,"hVertices"));
879 FetchData(&bamgopts->metric,&bamgopts->metricSize[0],&bamgopts->metricSize[1],PyDict_GetItemString(py_dict,"metric"));
880 FetchData(&bamgopts->field,&bamgopts->fieldSize[0],&bamgopts->fieldSize[1],PyDict_GetItemString(py_dict,"field"));
881 FetchData(&bamgopts->err,&bamgopts->errSize[0],&bamgopts->errSize[1],PyDict_GetItemString(py_dict,"err"));
882
883 /*Additional checks*/
884 bamgopts->Check();
885
886 /*Assign output pointers:*/
887 *pbamgopts=bamgopts;
888}
889/*}}}*/
890/*FUNCTION FetchData(Options** poptions,int istart, int nrhs,PyObject* py_tuple){{{*/
891void FetchData(Options** poptions,int istart, int nrhs,PyObject* py_tuple){
892
893 char *name = NULL;
894 Option *option = NULL;
895
896 /*Initialize output*/
897 Options* options=new Options();
898
899 /*Fetch all options*/
900 for (int i=istart; i<nrhs; i=i+2){
901 #if _PYTHON_MAJOR_ >= 3
902 if (!PyUnicode_Check(PyTuple_GetItem(py_tuple,(Py_ssize_t)i))) _error_("Argument " << i+1 << " must be name of option");
903 #else
904 if (!PyString_Check(PyTuple_GetItem(py_tuple,(Py_ssize_t)i))) _error_("Argument " << i+1 << " must be name of option");
905 #endif
906
907 FetchData(&name,PyTuple_GetItem(py_tuple,(Py_ssize_t)i));
908 if(i+1 == nrhs) _error_("Argument " << i+2 << " must exist and be value of option \"" << name << "\".");
909
910 _printf0_("FetchData for Options not implemented yet, ignoring option \"" << name << "\"!\n");
911
912// option=(Option*)OptionParse(name,&PyTuple_GetItem(py_tuple,(Py_ssize_t)(i+1)));
913// options->AddOption(option);
914// option=NULL;
915 }
916
917 /*Assign output pointers:*/
918 *poptions=options;
919}
920/*}}}*/
921/*FUNCTION FetchData(Contours** pcontours,PyObject* py_list){{{*/
922void FetchData(Contours** pcontours,PyObject* py_list){
923
924 int numcontours,test1,test2;
925 char *contourname = NULL;
926 Contours *contours = NULL;
927 Contour<double> *contouri = NULL;
928 PyObject *py_dicti = NULL;
929 PyObject *py_item = NULL;
930
931 #if _PYTHON_MAJOR_ >= 3
932 if (PyUnicode_Check(py_list)){
933 FetchData(&contourname,py_list);
934 contours=ExpRead<double>(contourname);
935 }
936 #else
937 if (PyString_Check(py_list)){
938 FetchData(&contourname,py_list);
939 contours=ExpRead<double>(contourname);
940 }
941 #endif
942 else if(PyList_Check(py_list)){
943
944 contours=new Contours();
945 numcontours=(int)PyList_Size(py_list);
946
947 for(int i=0;i<numcontours;i++){
948
949 contouri=new Contour<double>();
950 py_dicti=PyList_GetItem(py_list,(Py_ssize_t)i);
951
952 py_item = PyDict_GetItemString(py_dicti,"nods");
953 if(!py_item) _error_("input structure does not have a 'nods' field");
954 FetchData(&contouri->nods,py_item);
955
956 py_item = PyDict_GetItemString(py_dicti,"x");
957 if(!py_item) _error_("input structure does not have a 'x' field");
958 FetchData(&contouri->x,&test1,&test2,py_item);
959 if(test1!=contouri->nods || test2!=1) _error_("field x should be of size ["<<contouri->nods<<" 1]");
960
961 py_item = PyDict_GetItemString(py_dicti,"y");
962 if(!py_item) _error_("input structure does not have a 'y' field");
963 FetchData(&contouri->y,&test1,&test2,py_item);
964 if(test1!=contouri->nods || test2!=1) _error_("field y should be of size ["<<contouri->nods<<" 1]");
965
966 contours->AddObject(contouri);
967 }
968 }
969 else{
970 _error_("Contour is neither a string nor a structure and cannot be loaded");
971 }
972
973 /*clean-up and assign output pointer*/
974 xDelete<char>(contourname);
975 *pcontours=contours;
976}
977
978void FetchChacoData(int* pnvtxs,int** padjacency,int** pstart,float** pewgts,PyObject* A_IN, PyObject* EWGTS_IN){/*{{{*/
979
980 double* a = ((double*)PyArray_DATA((PyArrayObject*)A_IN));
981 int ndim = PyArray_NDIM((PyArrayObject*)A_IN);
982 int nzmax = PyArray_CountNonzero((PyArrayObject*)A_IN);
983
984 /*Fetch adjacency matrix:*/
985 int nvtxs = PyArray_DIMS((PyArrayObject*)A_IN)[1];
986
987 int* mwstart = xNewZeroInit<int>(nvtxs+1);
988 pyGetJc(a,nvtxs,mwstart);
989
990 int* mwadjacency = xNewZeroInit<int>(nzmax);
991 pyGetIr(a,nvtxs,nzmax,mwadjacency);
992
993 int* start = xNew<int>(nvtxs+1);
994 for(int i=0;i<nvtxs+1;i++) start[i]=(int)mwstart[i];
995 int* adjacency = xNew<int>(nzmax);
996 for(int i=0; i<nzmax; i++) adjacency[i]=(int)mwadjacency[i];
997
998 /*Get edges weights*/
999 int nedges = start[nvtxs];
1000 float* ewgts = NULL;
1001 int size = PyArray_SIZE((PyArrayObject*)EWGTS_IN);
1002 //size may be 1 and still be empty;
1003 //presumably size of edge_weights input will never be exactly 1
1004 if(size != 1 && size != 0){
1005 ewgts = xNewZeroInit<float>(nedges);
1006 for(int i = 0; i<nedges;i++){
1007 ewgts[i] = (float)a[i];
1008 }
1009 }
1010
1011 /*Assign output pointers*/
1012 *pnvtxs = nvtxs;
1013 *padjacency = adjacency;
1014 *pstart = start;
1015 *pewgts = ewgts;
1016}
1017/*}}}*/
1018
1019void pyGetJc(double* a, int nvtxs, int* Jc){
1020/*{{{*/
1021 //get the number of non-zero elements in each row, adding to the prior number;
1022 //always starts with 0 and has length: number_of_rows_in(a)+1 == nvtxs+1
1023 // eg: 0, 1, 3, 6, 8, 13, ...
1024 // for: 1 in the first row, 2 in the second, 3 in the third, etc.
1025 int c = 0;
1026 Jc[c++] = 0;
1027
1028 for(int i=0;i<nvtxs;i++){
1029 for(int j=0;j<nvtxs;j++){
1030 if ((int)a[i+(j*nvtxs)] != 0){
1031 Jc[c] += 1;
1032 }
1033 }
1034 c++;
1035 Jc[c] = Jc[c-1];
1036 }
1037 return;
1038}
1039/*}}}*/
1040
1041void pyGetIr(double* a, int nvtxs, int nzmax, int* Ir){
1042/*{{{*/
1043 //get the row-wise position of each non-zero element;
1044 //has length: number_of_non_zero_elements_in(a) == nzmax
1045 // eg: 10, 24, 25, 4, ...
1046 // the 10th, 24th, and 25th elements in the first row, the 4th in the second row
1047 // using pyGetJc to determine which indices correspond to which row
1048 int r = 0;
1049
1050 for(int i=0;i<nvtxs;i++){
1051 for(int j=0;j<nvtxs;j++){
1052 if ((int)a[i+(j*nvtxs)] != 0){
1053 Ir[r] = j;
1054 r++;
1055 }
1056 }
1057 }
1058 return;
1059}
1060/*}}}*/
1061
1062/*Python version dependent: */
1063/* #if _PYTHON_MAJOR_ >= 3 */
1064/* /\*FUNCTION FetchData(char** pstring,PyObject* py_unicode){{{*\/ */
1065/* void FetchData(char** pstring,PyObject* py_unicode){ */
1066
1067/* PyObject* py_bytes; */
1068/* char* string=NULL; */
1069
1070/* /\*convert to bytes format: *\/ */
1071/* PyUnicode_FSConverter(py_unicode,&py_bytes); */
1072
1073/* /\*convert from bytes to string: *\/ */
1074/* string=PyBytes_AsUTF8(py_bytes); */
1075
1076/* /\*copy string (note strlen does not include trailing NULL): *\/ */
1077/* *pstring=xNew<char>(strlen(string)+1); */
1078/* memcpy(*pstring,string,(strlen(string)+1)*sizeof(char)); */
1079/* } */
1080/* /\*}}}*\/ */
1081/* #else */
1082/*FUNCTION FetchData(char** pstring,PyObject* py_string){{{*/
1083void FetchData(char** pstring,PyObject* py_string){
1084
1085 char* string=NULL;
1086
1087 /*extract internal string: */
1088 #if _PYTHON_MAJOR_ == 3
1089 string=PyUnicode_AsUTF8(py_string);
1090 #else
1091 string=PyString_AsString(py_string);
1092 #endif
1093 /*copy string (note strlen does not include trailing NULL): */
1094 *pstring=xNew<char>(strlen(string)+1);
1095 memcpy(*pstring,string,(strlen(string)+1)*sizeof(char));
1096}
1097/*}}}*/
1098//#endif
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