[26969] | 1 | import numpy as np
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[25455] | 2 | from collections import OrderedDict
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[25065] | 3 | from os import path
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| 4 | try:
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| 5 | import shapefile
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| 6 | except ImportError:
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| 7 | print("could not import shapefile, PyShp has not been installed, no shapefile reading capabilities enabled")
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| 8 |
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| 9 | from pairoptions import pairoptions
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| 10 |
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| 11 |
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[27458] | 12 | def shpread(filename, *args): # {{{
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[25455] | 13 | """SHPREAD - read a shapefile and build a list of shapes
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[25065] | 14 |
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[26969] | 15 | This routine reads a shapefile and builds a list of OrderedDict objects
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| 16 | containing the fields x and y corresponding to the coordinates, one for the
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| 17 | filename of the shp file, for the density, for the nodes, and a field
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| 18 | closed to indicate if the domain is closed. If this initial shapefile is
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| 19 | point only, the fields closed and points are ommitted. The first argument
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| 20 | is the shapefile to be read and the second argument (optional) indicates if
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[25455] | 21 | the last point shall be read (1 to read it, 0 not to).
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[25065] | 22 |
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| 23 | The current implementation of shpread depends on PyShp.
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| 24 |
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| 25 | Usage:
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[25455] | 26 | list = shpread(filename)
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[25065] | 27 |
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| 28 | Example:
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[26969] | 29 | From underling PyShp implementation, "The shapefile format is actually
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| 30 | a collection of three files. You specify the base filename of the
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| 31 | shapefile or the complete filename of any of the shapefile component
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[25455] | 32 | files."
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[25065] | 33 |
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[25455] | 34 | list = shpread('domainoutline.shp')
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[25065] | 35 | OR
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[25455] | 36 | list = shpread('domainoutline.dbf')
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[25065] | 37 | OR
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[25455] | 38 | list = shpread('domainoutline')
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[25065] | 39 |
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[26969] | 40 | "OR any of the other 5+ formats which are potentially part of a
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| 41 | shapefile. The library does not care about file extensions". We do,
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| 42 | however, check that a file with the base filename or base filename with
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[25065] | 43 | .shp extension exists.
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| 44 |
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| 45 | Sources:
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| 46 | - https://github.com/GeospatialPython/pyshp
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[25125] | 47 |
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[25455] | 48 | NOTE:
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[26969] | 49 | - OrderedDict objects are used instead of OrderedStruct objects (although
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| 50 | addressing in the latter case is closer to the MATLAB struct type) in order
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[25455] | 51 | to remain consistent with the pattern established by src/m/exp/expread.py.
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| 52 |
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[25125] | 53 | TODO:
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[26969] | 54 | - Create class that can be used to store and pretty print shape structs
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[25455] | 55 | (ala OrderedStruct from src/m/qmu/helpers.py).
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[26969] | 56 | - Convert returned data structure from list of OrderedDict objects to list
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| 57 | of OrderedStruct objects and remove corresponding note (see also
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[25455] | 58 | src/m/exp/expread.py). Also, modify handling of returned data structure in,
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| 59 | - src/m/classes/basin.py
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| 60 | - src/m/classes/boundary.py
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| 61 | - src/m/modules/ExpToLevelSet.py
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| 62 | - src/m/mesh/bamg.py
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| 63 | May also need to modify addressing in corresponding FetchData function, or
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| 64 | create new one, in src/wrappers/ContoursToNodes/ContoursToNodes.cpp.
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| 65 | """
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[25065] | 66 |
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| 67 | #recover options
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| 68 | options = pairoptions(*args)
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| 69 |
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| 70 | #some checks
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| 71 | if not (path.isfile(filename) or path.isfile(filename + '.shp')):
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| 72 | raise RuntimeError('shpread error message: file {} or {}.shp not found!'.format(filename, filename))
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| 73 |
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| 74 | #read shapefile
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| 75 | sf = shapefile.Reader(filename)
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| 76 |
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[25125] | 77 | Structs = []
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[25065] | 78 | shapes = sf.shapes()
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[26969] | 79 | for i, shape in enumerate(shapes):
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[25455] | 80 | Struct = OrderedDict()
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[25065] | 81 | if shape.shapeType == shapefile.POINT:
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[25455] | 82 | Struct['x'] = shape.points[0][0]
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| 83 | Struct['y'] = shape.points[0][1]
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| 84 | Struct['density'] = 1
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| 85 | Struct['Geometry'] = 'Point'
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[25065] | 86 | elif shape.shapeType == shapefile.POLYLINE:
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| 87 | num_points = len(shape.points)
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| 88 | x = []
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| 89 | y = []
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[26969] | 90 | for j, point in enumerate(shape.points):
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[25065] | 91 | x.append(point[0])
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| 92 | y.append(point[1])
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[25455] | 93 | Struct['x'] = x
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| 94 | Struct['y'] = y
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| 95 | Struct['nods'] = num_points
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| 96 | Struct['density'] = 1
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| 97 | Struct['closed'] = 1
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| 98 | Struct['BoundingBox'] = shape.bbox
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| 99 | Struct['Geometry'] = 'Line'
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[25065] | 100 | elif shape.shapeType == shapefile.POLYGON:
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| 101 | num_points = len(shape.points)
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| 102 | x = []
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| 103 | y = []
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[26969] | 104 | for j, point in enumerate(shape.points):
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[25065] | 105 | x.append(point[0])
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| 106 | y.append(point[1])
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[25455] | 107 | Struct['x'] = x
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| 108 | Struct['y'] = y
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| 109 | Struct['nods'] = num_points
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| 110 | Struct['density'] = 1
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| 111 | Struct['closed'] = 1
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| 112 | Struct['BoundingBox'] = shape.bbox
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| 113 | Struct['Geometry'] = 'Polygon'
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[25065] | 114 | else:
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[26969] | 115 | # NOTE: We could do this once before looping over shapes as all
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| 116 | # shapes in the file must be of the same type, but we would
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| 117 | # need to have a second check anyway in order to know how to
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| 118 | # parse the points. So, let's just assume the file is not
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[25065] | 119 | # malformed.
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| 120 | #
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| 121 | raise Exception('shpread error: geometry {} is not currently supported'.format(shape.shapeTypeName))
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[25125] | 122 |
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[25065] | 123 | name = ''
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| 124 | fields = sf.fields
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[26969] | 125 | for j in range(1, len(fields)): # skip over first field, which is "DeletionFlag"
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[25065] | 126 | fieldname = fields[j][0]
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| 127 | # 'id' field gets special treatment
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[26969] | 128 | if fieldname in ['id', 'fid']:
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| 129 | name = str(sf.record(i)[j - 1]) # record index is offset by one, again, because of "DeletionFlag"
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[25065] | 130 | else:
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[26969] | 131 | setattr(Struct, str(fieldname), sf.record(i)[j - 1]) # cast to string removes "u" from "u'fieldname'"
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[25455] | 132 | Struct['name'] = name
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[25125] | 133 | Structs.append(Struct)
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[25065] | 134 |
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| 135 | invert = options.getfieldvalue('invert', 0)
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| 136 | if invert:
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[25125] | 137 | for i in range(len(Structs)):
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[25455] | 138 | Structs[i]['x'] = np.flipud(Structs[i]['x'])
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| 139 | Structs[i]['y'] = np.flipud(Structs[i]['y'])
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[25065] | 140 |
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[25125] | 141 | return Structs
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[27458] | 142 | # }}}
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