source: issm/trunk-jpl/src/m/partition/partitioner.m@ 25109

function [partitionvector, md]=partitioner(md,varargin)
%PARTITIONER - partition mesh 
%
%   List of options to partitioner: 
%
%   package: 'chaco', 'metis' or 'scotch'
%   npart: number of partitions.
%   weighting: 'on' or 'off': default off
%   section:  1 by defaults(1=bisection, 2=quadrisection, 3=octasection)
%   recomputeadjacency:  'on' by default (set to 'off' to compute existing one)
%   type: 'node' or 'element' partition vector (default to 'node') 
%   Output: partitionvector: the partition vector
%   
%   Usage:
%      partitionvector=partitioner(md,'package','chaco','npart',100,'weighting','on');
%

%get options: 
options=pairoptions(varargin{:});

%set defaults
options=addfielddefault(options,'package','chaco');
options=addfielddefault(options,'npart',10);
options=addfielddefault(options,'weighting','on');
options=addfielddefault(options,'section',1);
options=addfielddefault(options,'recomputeadjacency','on');
options=addfielddefault(options,'type','node');

%get package: 
package=getfieldvalue(options,'package');
npart=getfieldvalue(options,'npart');
recomputeadjacency=getfieldvalue(options,'recomputeadjacency');
vectortype=getfieldvalue(options,'type');

if(dimension(md.mesh)==3),
        %partitioning essentially happens in 2D. So partition in 2D, then 
        %extrude the partition vector vertically. 
        md3d=md; %save  for later
        md.mesh.elements=md.mesh.elements2d;
        md.mesh.x=md.mesh.x2d;
        md.mesh.y=md.mesh.y2d;
        md.mesh.numberofvertices=md.mesh.numberofvertices2d;
        md.mesh.numberofelements=md.mesh.numberofelements2d;
        md.qmu.vertex_weight=[];
        md.mesh.vertexconnectivity=[];
        recomputeadjacency='on';
end

%adjacency matrix if needed:
if strcmpi(recomputeadjacency,'on'),
        md=adjacency(md);
else
        disp('skipping adjacency matrix computation as requested in the options');
end

if strcmpi(package,'chaco'),

        if strcmpi(vectortype,'element')
                error(['partitioner error message: package ' package ' does not allow element partitions.']);
        else

                %  default method (from chaco.m)
                method=[1 1 0 0 1 1 50 0 .001 7654321]';
                method(1)=3;    %  global method (3=inertial (geometric))
                method(3)=0;    %  vertex weights (0=off, 1=on)

                %specify bisection
                method(6)=getfieldvalue(options,'section');%  ndims (1=bisection, 2=quadrisection, 3=octasection)

                %are we using weights? 
                if strcmpi(getfieldvalue(options,'weighting'),'on'),
                        weights=floor(md.qmu.vertex_weight/min(md.qmu.vertex_weight));
                        method(3)=1;
                else 
                        weights=[];
                end

                %  partition into nparts
                if isa(md.mesh,'mesh2d'),
                        part=Chaco(md.qmu.adjacency,weights,[],md.mesh.x, md.mesh.y,zeros(md.mesh.numberofvertices,1),method,npart,[])'+1; %index partitions from 1 up. like metis.
                else
                        part=Chaco(md.qmu.adjacency,weights,[],md.mesh.x, md.mesh.y,md.mesh.z,method,npart,[])'+1; %index partitions from 1 up. like metis.
                end

        end

elseif strcmpi(package,'scotch'),

        if strcmpi(vectortype,'element')
                error(['partitioner error message: package ' package ' does not allow element partitions.']);
        else
                %are we using weights? 
                if strcmpi(getfieldvalue(options,'weighting'),'on'),
                        weights=floor(md.qmu.vertex_weight/min(md.qmu.vertex_weight));
                else
                        weights=[];
                end
                maptab=Scotch(md.qmu.adjacency,[],weights,[],'cmplt',[npart]);

                part=maptab(:,2)+1;%index partitions from 1 up. like metis.
        end

elseif strcmpi(package,'linear'),

        if strcmpi(vectortype,'element')
                part=1:1:md.mesh.numberofelements;
                disp('Linear partitioner requesting partitions on elements');
        else
                part=1:1:md.mesh.numberofvertices;
        end

elseif strcmpi(package,'metis'),

        if strcmpi(vectortype,'element')
                error(['partitioner error message: package ' package ' does not allow element partitions.']);
        else
                [element_partitioning,part]=MeshPartition(md,md.qmu.numberofpartitions);
        end

else

        error(['partitioner error message: could not find ' package ' partitioner']);
        help partitioner
end

%extrude if we are in 3D:
if dimension(md.mesh)==3,
        md3d.qmu.vertex_weight=md.qmu.vertex_weight;
        md3d.qmu.adjacency=md.qmu.adjacency;
        md=md3d;
        if strcmpi(vectortype,'element')
                part=project3d(md,'vector',part','type','element');
        else
                part=project3d(md,'vector',part','type','node');
        end
end

if size(part,1)==1
        part=part';
end

%output 
partitionvector=part;