source: issm/trunk-jpl/src/m/classes/clusters/castor.m@ 12363

%CASTOR class definition
%
%   Usage:
%      cluster=castor();
%      cluster=castor('np',3);
%      cluster=castor('np',3,'login','username');

classdef castor
    properties (SetAccess=public) 
                 % {{{
                 name='castor'
                 login='username';
                 np   =128;
                 port=0;
                 queue='shortc';
                 time=180;
                 codepath='/workp/edw/issm-2.0/bin'
                 executionpath='/workp/edw/Testing/Execution'
                 %}}}
         end
         methods
                 function cluster=castor(varargin) % {{{
                         cluster=AssignObjectFields(pairoptions(varargin{:}),cluster);
                 end
                 %}}}
                 function disp(cluster) % {{{
                         %  display the object
                         disp(sprintf('class ''%s'' object ''%s'' = ',class(cluster),inputname(1)));
                         disp(sprintf('    name: %s',cluster.name));
                         disp(sprintf('    login: %s',cluster.login));
                         disp(sprintf('    np: %i',cluster.np));
                         disp(sprintf('    port: %i',cluster.port));
                         disp(sprintf('    queue: %s',cluster.queue));
                         disp(sprintf('    time: %i',cluster.time));
                         disp(sprintf('    codepath: %s',cluster.codepath));
                         disp(sprintf('    executionpath: %s',cluster.executionpath));
                 end
                 %}}}
                 function checkconsistency(cluster,md,solution,analyses) % {{{

                         available_queues={'shortc','longc'};
                         queue_requirements_time=[180 720];
                         queue_requirements_np=[128 128];

                         QueueRequirements(available_queues,queue_requirements_time,queue_requirements_np,cluster.queue,cluster.np,cluster.time)
                 end
                 %}}}
                 function BuildQueueScript(cluster,modelname,solution,io_gather,isvalgrind,isgprof) % {{{

                         if(isvalgrind), disp('valgrind not supported by cluster, ignoring...'); end
                         if(isgprof),    disp('gprof not supported by cluster, ignoring...'); end

                         %write queuing script 
                         fid=fopen([modelname '.queue'],'w');
                         fprintf(fid,'#!/bin/sh\n');
                         fprintf(fid,'#PBS -l walltime=%i\n',cluster.time*60); %walltime is in seconds.
                         fprintf(fid,'#PBS -N %s\n',modelname);
                         fprintf(fid,'#PBS -l ncpus=%i\n',cluster.np);
                         if ~isempty(queue),
                                 fprintf(fid,'#PBS -q %s\n',cluster.queue);
                         end
                         fprintf(fid,'#PBS -o %s.outlog \n',modelname);
                         fprintf(fid,'#PBS -e %s.errlog \n',modelname);
                         fprintf(fid,'export PBS_O_WORKDIR=%s\n',cluster.executionpath);
                         fprintf(fid,'cd $PBS_O_WORKDIR\n');
                         fprintf(fid,'export OMP_NUM_THREADS=1\n');
                         fprintf(fid,'dplace -s1 -c0-%i mpiexec -np %i %s/issm.exe %s %s %s',cluster.np-1,cluster.np,cluster.codepath,EnumToString(solution),cluster.executionpath,modelname);
                         fclose(fid);

                 end
                 %}}}
                 function LaunchQueueJob(cluster,md,options)% {{{
                         
                         %lauch command, to be executed via ssh
                         launchcommand=['cd ' cluster.executionpath ' && rm -rf ./' md.private.runtimename ' && mkdir ' md.private.runtimename ...
                                        ' && cd ' md.private.runtimename ' && mv ../' md.private.runtimename '.tar.gz ./ && tar -zxf ' md.private.runtimename '.tar.gz  && qsub ' modelname '.queue '];

                        if ~strcmpi(options.batch,'yes'),
                                
                                %compress the files into one zip.
                                compressstring=['tar -zcf ' md.private.runtimename '.tar.gz ' md.miscellaneous.name '.bin ' md.miscellaneous.name '.queue '  md.miscellaneous.name '.petsc '];
                                if md.qmu.isdakota,
                                        compressstring=[compressstring md.miscellaneous.name '.qmu.in'];
                                end
                                system(compressstring);
                                
                                disp('uploading input file and queueing script');
                                issmscpout(md.cluster.name,md.cluster.executionpath,md.cluster.login,md.cluster.port,{[md.private.runtimename '.tar.gz']});
                                
                                disp('launching solution sequence on remote cluster');
                                issmssh(md.cluster.name,md.cluster.login,md.cluster.port,launchcommand);

                        else
                                disp('batch mode requested: not launching job interactively');
                                disp('launch solution sequence on remote cluster by hand');
                        end

                 end
                 %}}}
                 function Download(cluster,dirname,filelist)% {{{

                         %copy files from cluster to current directory
                         directory=[cluster.executionpath '/' dirname '/'];
                         issmscpin(cluster.name,cluster.login,cluster.port,directory,filelist);

                 end %}}}
        end
end