source: issm/trunk-jpl/src/c/classes/Elements/Element.h@ 17797

Last change on this file since 17797 was 17797, checked in by seroussi, 11 years ago

NEW: added sigma_nn in outputs
File size: 17.5 KB
RevLine 
[3683]1/*!\file: Element.h
2 * \brief abstract class for Element object
3 * This class is a place holder for the Tria and the Penta elements.
4 * It is derived from Element, so DataSets can contain them.
5 */
6
7#ifndef _ELEMENT_H_
8#define _ELEMENT_H_
9
10/*Headers:*/
[12365]11/*{{{*/
[15067]12#include "../../datastructures/datastructures.h"
[16789]13#include "../../toolkits/toolkits.h"
[15012]14#include "../Update.h"
[3683]15class DataSet;
16class Parameters;
[16912]17class Parameter;
[14996]18class Elements;
19class Loads;
[16912]20class Nodes;
[14996]21class Node;
22class Vertices;
[16912]23class Vertex;
[14996]24class Materials;
[16912]25class Material;
[16693]26class Matpar;
[16912]27class Inputs;
[16675]28class Input;
29class Gauss;
[16799]30class ElementVector;
[13216]31template <class doublematrix> class Matrix;
32template <class doubletype> class Vector;
[16789]33class ElementMatrix;
34class ElementVector;
[3683]35/*}}}*/
36
[4244]37class Element: public Object,public Update{
[3683]38
[16910]39 public:
[17516]40 int id;
41 int sid;
[16912]42 Inputs *inputs;
43 Node **nodes;
44 Vertex **vertices;
45 Material *material;
46 Matpar *matpar;
47 Parameters *parameters;
[16910]48
[3683]49 public:
[16910]50 /*Constructors/Destructores*/
51 Element();
52 ~Element();
[13623]53
[16910]54 /*Functions*/
[16913]55 void AddInput(Input* input_in);
[17362]56 /* bool AllActive(void); */
57 /* bool AnyActive(void); */
[17255]58 void CoordinateSystemTransform(IssmDouble** ptransform,Node** nodes,int numnodes,int* cs_array);
[17516]59 void Echo();
60 void DeepEcho();
[16913]61 void DeleteMaterials(void);
[17394]62 IssmDouble Divergence(void);
[17516]63 void ThermalToEnthalpy(IssmDouble* penthalpy,IssmDouble temperature,IssmDouble waterfraction,IssmDouble pressure);
64 void EnthalpyToThermal(IssmDouble* ptemperature,IssmDouble* pwaterfraction,IssmDouble enthalpy,IssmDouble pressure);
65 IssmDouble EnthalpyDiffusionParameter(IssmDouble enthalpy,IssmDouble pressure);
66 IssmDouble EnthalpyDiffusionParameterVolume(int numvertices,IssmDouble* enthalpy,IssmDouble* pressure);
[16913]67 void FindParam(bool* pvalue,int paramenum);
68 void FindParam(int* pvalue,int paramenum);
69 void FindParam(IssmDouble* pvalue,int paramenum);
70 void FindParam(int** pvalues,int* psize,int paramenum);
[17296]71 void GetDofList(int** pdoflist,int approximation_enum,int setenum);
72 void GetDofListVelocity(int** pdoflist,int setenum);
73 void GetDofListPressure(int** pdoflist,int setenum);
[16913]74 Input* GetInput(int inputenum);
[17309]75 void GetInputListOnNodes(IssmDouble* pvalue,int enumtype);
76 void GetInputListOnNodes(IssmDouble* pvalue,int enumtype,IssmDouble defaultvalue);
[17330]77 void GetInputListOnNodesVelocity(IssmDouble* pvalue,int enumtype);
[17309]78 void GetInputListOnVertices(IssmDouble* pvalue,int enumtype);
79 void GetInputListOnVertices(IssmDouble* pvalue,int enumtype,IssmDouble defaultvalue);
[17338]80 void GetInputValue(bool* pvalue,int enum_type);
81 void GetInputValue(int* pvalue,int enum_type);
82 void GetInputValue(IssmDouble* pvalue,int enum_type);
83 void GetInputValue(IssmDouble* pvalue,Gauss* gauss,int enum_type);
[16913]84 IssmDouble GetMaterialParameter(int enum_in);
[17472]85 void GetNodesSidList(int* sidlist);
86 void GetNodesLidList(int* lidlist);
[16947]87 void GetPhi(IssmDouble* phi, IssmDouble* epsilon, IssmDouble viscosity);
[17671]88 void GetVectorFromInputs(Vector<IssmDouble>* vector, int name_enum);
89 void GetVertexPidList(int* pidlist);
[17472]90 void GetVerticesCoordinates(IssmDouble** xyz_list);
[16947]91 void GetVerticesSidList(int* sidlist);
92 void GetVerticesConnectivityList(int* connectivitylist);
[17585]93 bool HasNodeOnBase();
[17516]94 bool HasNodeOnSurface();
95 int Id();
96 int Sid();
[17472]97 void InputChangeName(int enum_type,int enum_type_old);
98 void InputCreate(IssmDouble* vector,IoModel* iomodel,int M,int N,int vector_type,int vector_enum,int code);
99 void InputUpdateFromConstant(IssmDouble constant, int name);
100 void InputUpdateFromConstant(int constant, int name);
101 void InputUpdateFromConstant(bool constant, int name);
[17516]102 bool IsIceInElement();
[17275]103 bool IsInput(int name);
[16913]104 bool IsFloating();
[17472]105 ElementVector* NewElementVector(int approximation_enum=NoneApproximationEnum);
106 ElementMatrix* NewElementMatrix(int approximation_enum=NoneApproximationEnum);
107 ElementMatrix* NewElementMatrixCoupling(int number_nodes,int approximation_enum=NoneApproximationEnum);
[17516]108 IssmDouble PureIceEnthalpy(IssmDouble pressure);
[17100]109 void ResultInterpolation(int* pinterpolation,int*nodesperelement,int output_enum);
[16947]110 void ResultToVector(Vector<IssmDouble>* vector,int output_enum);
[17100]111 void ResultToPatch(IssmDouble* values,int nodesperelement,int output_enum);
[17516]112 void SetwiseNodeConnectivity(int* d_nz,int* o_nz,Node* node,bool* flags,int* flagsindices,int set1_enum,int set2_enum);
[16915]113 void StrainRateSSA(IssmDouble* epsilon,IssmDouble* xyz_list,Gauss* gauss,Input* vx_input,Input* vy_input);
[17296]114 void StrainRateSSA1d(IssmDouble* epsilon,IssmDouble* xyz_list,Gauss* gauss,Input* vx_input);
[16915]115 void StrainRateHO(IssmDouble* epsilon,IssmDouble* xyz_list,Gauss* gauss,Input* vx_input,Input* vy_input);
[17242]116 void StrainRateHO2dvertical(IssmDouble* epsilon,IssmDouble* xyz_list,Gauss* gauss,Input* vx_input,Input* vy_input);
[16915]117 void StrainRateFS(IssmDouble* epsilon,IssmDouble* xyz_list,Gauss* gauss,Input* vx_input,Input* vy_input,Input* vz_input);
[16914]118 IssmDouble TMeltingPoint(IssmDouble pressure);
[17255]119 void TransformInvStiffnessMatrixCoord(ElementMatrix* Ke,int cs_enum);
120 void TransformInvStiffnessMatrixCoord(ElementMatrix* Ke,Node** nodes,int numnodes,int cs_enum);
121 void TransformInvStiffnessMatrixCoord(ElementMatrix* Ke,Node** nodes,int numnodes,int* cs_array);
122 void TransformLoadVectorCoord(ElementVector* pe,int cs_enum);
123 void TransformLoadVectorCoord(ElementVector* pe,int* cs_array);
124 void TransformLoadVectorCoord(ElementVector* pe,Node** nodes,int numnodes,int cs_enum);
125 void TransformLoadVectorCoord(ElementVector* pe,Node** nodes,int numnodes,int* cs_array);
126 void TransformSolutionCoord(IssmDouble* solution,int cs_enum);
127 void TransformSolutionCoord(IssmDouble* solution,int* cs_array);
128 void TransformSolutionCoord(IssmDouble* solution,int numnodes,int cs_enum);
129 void TransformSolutionCoord(IssmDouble* solution,int numnodes,int* cs_array);
130 void TransformSolutionCoord(IssmDouble* solution,Node** nodes,int numnodes,int cs_enum);
131 void TransformSolutionCoord(IssmDouble* solution,Node** nodes,int numnodes,int* cs_array);
132 void TransformStiffnessMatrixCoord(ElementMatrix* Ke,int cs_enum);
133 void TransformStiffnessMatrixCoord(ElementMatrix* Ke,int* cs_array);
134 void TransformStiffnessMatrixCoord(ElementMatrix* Ke,Node** nodes,int numnodes,int cs_enum);
135 void TransformStiffnessMatrixCoord(ElementMatrix* Ke,Node** nodes,int numnodes,int* cs_array);
[16947]136 void ViscousHeatingCreateInput(void);
[16922]137 void ViscosityFS(IssmDouble* pviscosity,int dim,IssmDouble* xyz_list,Gauss* gauss,Input* vx_input,Input* vy_input,Input* vz_input);
[17242]138 void ViscosityHO(IssmDouble* pviscosity,int dim,IssmDouble* xyz_list,Gauss* gauss,Input* vx_input,Input* vy_input);
[16915]139 void ViscosityL1L2(IssmDouble* pviscosity,IssmDouble* xyz_list,Gauss* gauss,Input* vx_input,Input* vy_input,Input* surf);
[17296]140 void ViscositySSA(IssmDouble* pviscosity,int dim,IssmDouble* xyz_list,Gauss* gauss,Input* vx_input,Input* vy_input);
[16915]141 void ViscositySSADerivativeEpsSquare(IssmDouble* pmu_prime,IssmDouble* epsilon);
142 void ViscosityHODerivativeEpsSquare(IssmDouble* pmu_prime,IssmDouble* epsilon);
143 void ViscosityFSDerivativeEpsSquare(IssmDouble* pmu_prime,IssmDouble* epsilon);
[16947]144 void TransformLoadVectorCoord(ElementVector* pe,int numnodes,int transformenum){_error_("not implemented yet");};/*Tiling only*/
145 void TransformLoadVectorCoord(ElementVector* pe,int numnodes,int* transformenum_list){_error_("not implemented yet");};/*Tiling only*/
146 void TransformStiffnessMatrixCoord(ElementMatrix* Ke,int numnodes,int* transformenum_list){_error_("not implemented yet");};/*Tiling only*/
[13623]147
[16910]148 /*Virtual functions*/
[16912]149 virtual void AddBasalInput(int input_enum, IssmDouble* values, int interpolation_enum)=0;
150 virtual void AddInput(int input_enum, IssmDouble* values, int interpolation_enum)=0;
[16832]151 virtual IssmDouble CharacteristicLength(void)=0;
[16912]152 virtual void Configure(Elements* elements,Loads* loads,Nodes* nodes,Vertices* vertices,Materials* materials,Parameters* parameters)=0;
153 virtual void SetCurrentConfiguration(Elements* elements,Loads* loads,Nodes* nodes,Materials* materials,Parameters* parameters)=0;
[16840]154 virtual void ElementSizes(IssmDouble* phx,IssmDouble* phy,IssmDouble* phz)=0;
[17516]155
[16675]156 virtual int FiniteElement(void)=0;
[16810]157 virtual IssmDouble MinEdgeLength(IssmDouble* xyz_list)=0;
[16799]158 virtual void NodalFunctions(IssmDouble* basis,Gauss* gauss)=0;
[16926]159 virtual void NodalFunctionsP1(IssmDouble* basis,Gauss* gauss)=0;
[16831]160 virtual void NodalFunctionsVelocity(IssmDouble* basis, Gauss* gauss)=0;
161 virtual void NodalFunctionsPressure(IssmDouble* basis, Gauss* gauss)=0;
[17536]162 virtual void NodalFunctionsTensor(IssmDouble* basis, Gauss* gauss)=0;
[16810]163 virtual void NodalFunctionsDerivatives(IssmDouble* dbasis,IssmDouble* xyz_list,Gauss* gauss)=0;
[16926]164 virtual void NodalFunctionsP1Derivatives(IssmDouble* dbasis,IssmDouble* xyz_list,Gauss* gauss)=0;
[16949]165 virtual void NodalFunctionsMINIDerivatives(IssmDouble* dbasis,IssmDouble* xyz_list,Gauss* gauss)=0;
[16831]166 virtual void NodalFunctionsDerivativesVelocity(IssmDouble* dbasis,IssmDouble* xyz_list,Gauss* gauss)=0;
[16839]167 virtual void NormalSection(IssmDouble* normal,IssmDouble* xyz_list)=0;
[16827]168 virtual void NormalTop(IssmDouble* normal,IssmDouble* xyz_list)=0;
[16844]169 virtual void NormalBase(IssmDouble* normal,IssmDouble* xyz_list)=0;
[16916]170
[17014]171 virtual Element* GetUpperElement(void)=0;
172 virtual Element* GetLowerElement(void)=0;
173 virtual Element* GetSurfaceElement(void)=0;
[16762]174 virtual Element* GetBasalElement(void)=0;
[17296]175
[16799]176 virtual void JacobianDeterminant(IssmDouble* Jdet, IssmDouble* xyz_list,Gauss* gauss)=0;
[16850]177 virtual void JacobianDeterminantLine(IssmDouble* Jdet, IssmDouble* xyz_list,Gauss* gauss)=0;
[16838]178 virtual void JacobianDeterminantSurface(IssmDouble* Jdet, IssmDouble* xyz_list,Gauss* gauss)=0;
[16803]179 virtual void JacobianDeterminantBase(IssmDouble* Jdet,IssmDouble* xyz_list_base,Gauss* gauss)=0;
[16827]180 virtual void JacobianDeterminantTop(IssmDouble* Jdet,IssmDouble* xyz_list_base,Gauss* gauss)=0;
[16675]181 virtual void GetSolutionFromInputsOneDof(Vector<IssmDouble>* solution,int solutionenum)=0;
[5719]182 virtual int GetNodeIndex(Node* node)=0;
[13886]183 virtual int GetNumberOfNodes(void)=0;
[16727]184 virtual int GetNumberOfVertices(void)=0;
[13892]185
[12471]186 virtual bool IsNodeOnShelfFromFlags(IssmDouble* flags)=0;
[17585]187 virtual bool IsOnBase()=0;
[16827]188 virtual bool IsOnSurface()=0;
[16872]189 virtual void GetGroundedPart(int* point1,IssmDouble* fraction1,IssmDouble* fraction2, bool* mainlyfloating)=0;
190 virtual IssmDouble GetGroundedPortion(IssmDouble* xyz_list)=0;
[12471]191 virtual void GetInputValue(IssmDouble* pvalue,Node* node,int enumtype)=0;
[16907]192 virtual Node* GetNode(int node_number)=0;
[16803]193 virtual void GetVerticesCoordinatesBase(IssmDouble** xyz_list)=0;
[16827]194 virtual void GetVerticesCoordinatesTop(IssmDouble** xyz_list)=0;
[17109]195 virtual IssmDouble GetXcoord(Gauss* gauss)=0;
196 virtual IssmDouble GetYcoord(Gauss* gauss)=0;
[16839]197 virtual IssmDouble GetZcoord(Gauss* gauss)=0;
[17027]198 virtual int GetElementType(void)=0;
[13623]199
[12471]200 virtual IssmDouble SurfaceArea(void)=0;
[17275]201 virtual void InputDepthAverageAtBase(int enum_type,int average_enum_type)=0;
[17797]202 virtual void ComputeSigmaNN(void)=0;
[13216]203 virtual void ComputeBasalStress(Vector<IssmDouble>* sigma_b)=0;
204 virtual void ComputeStrainRate(Vector<IssmDouble>* eps)=0;
[16848]205 virtual void ComputeStressTensor(void)=0;
[17680]206 virtual void ComputeDeviatoricStressTensor(void)=0;
[16947]207
[15613]208 virtual void Update(int index, IoModel* iomodel,int analysis_counter,int analysis_type,int finite_element)=0;
[8967]209 virtual void InputDuplicate(int original_enum,int new_enum)=0;
[16715]210 virtual void InputUpdateFromSolutionOneDofCollapsed(IssmDouble* solution,int inputenum)=0;
[16717]211 virtual void InputUpdateFromSolutionOneDof(IssmDouble* solution,int inputenum)=0;
[13623]212
[15130]213 virtual int NodalValue(IssmDouble* pvalue, int index, int natureofdataenum)=0;
[16675]214 virtual int NumberofNodesVelocity(void)=0;
215 virtual int NumberofNodesPressure(void)=0;
216 virtual Gauss* NewGauss(void)=0;
[16799]217 virtual Gauss* NewGauss(int order)=0;
[16838]218 virtual Gauss* NewGauss(IssmDouble* xyz_list, IssmDouble* xyz_list_front,int order)=0;
[16839]219 virtual Gauss* NewGauss(IssmDouble* xyz_list, IssmDouble* xyz_list_front,int order_horiz,int order_vert)=0;
[16872]220 virtual Gauss* NewGauss(int point1,IssmDouble fraction1,IssmDouble fraction2,bool mainlyfloating,int order)=0;
[16803]221 virtual Gauss* NewGaussBase(int order)=0;
[16850]222 virtual Gauss* NewGaussLine(int vertex1,int vertex2,int order)=0;
[16827]223 virtual Gauss* NewGaussTop(int order)=0;
[17472]224
[12471]225 virtual void InputScale(int enum_type,IssmDouble scale_factor)=0;
226 virtual IssmDouble TimeAdapt()=0;
227 virtual void PositiveDegreeDay(IssmDouble* pdds,IssmDouble* pds,IssmDouble signorm)=0;
[12748]228 virtual void Delta18oParameterization(void)=0;
[16721]229 virtual void SmbGradients(void)=0;
230 virtual Element* SpawnBasalElement(void)=0;
[17172]231 virtual Element* SpawnTopElement(void)=0;
[16789]232 virtual void ReduceMatrices(ElementMatrix* Ke,ElementVector* pe)=0;
[17322]233 virtual void ResetFSBasalBoundaryCondition()=0;
[16926]234 virtual void SetTemporaryElementType(int element_type_in)=0;
[16810]235 virtual IssmDouble StabilizationParameter(IssmDouble u, IssmDouble v, IssmDouble w, IssmDouble diameter, IssmDouble kappa)=0;
[16860]236 virtual void ValueP1OnGauss(IssmDouble* pvalue,IssmDouble* values,Gauss* gauss)=0;
237 virtual void ValueP1DerivativesOnGauss(IssmDouble* dvalue,IssmDouble* values,IssmDouble* xyz_list,Gauss* gauss)=0;
[16810]238 virtual void ViscousHeating(IssmDouble* pphi,IssmDouble* xyz_list,Gauss* gauss,Input* vx_input,Input* vy_input,Input* vz_input)=0;
[16915]239
[16675]240 virtual int VelocityInterpolation()=0;
241 virtual int PressureInterpolation()=0;
[16833]242 virtual bool IsZeroLevelset(int levelset_enum)=0;
[17257]243 virtual bool IsIcefront(void)=0;
[16838]244 virtual void ZeroLevelsetCoordinates(IssmDouble** pxyz_zero,IssmDouble* xyz_list,int levelsetenum)=0;
[17194]245 virtual void GetIcefrontCoordinates(IssmDouble** pxyz_front,IssmDouble* xyz_list,int levelsetenum)=0;
246 virtual void GetNormalFromLSF(IssmDouble *pnormal)=0;
[9817]247
[15387]248 virtual void AverageOntoPartition(Vector<IssmDouble>* partition_contributions,Vector<IssmDouble>* partition_areas,IssmDouble* vertex_response,IssmDouble* qmu_part)=0;
[15130]249 virtual void MinVel(IssmDouble* pminvel)=0;
250 virtual void MaxVel(IssmDouble* pmaxvel)=0;
251 virtual void MinVx(IssmDouble* pminvx)=0;
252 virtual void MaxVx(IssmDouble* pmaxvx)=0;
253 virtual void MaxAbsVx(IssmDouble* pmaxabsvx)=0;
254 virtual void MinVy(IssmDouble* pminvy)=0;
255 virtual void MaxVy(IssmDouble* pmaxvy)=0;
256 virtual void MaxAbsVy(IssmDouble* pmaxabsvy)=0;
257 virtual void MinVz(IssmDouble* pminvz)=0;
258 virtual void MaxVz(IssmDouble* pmaxvz)=0;
259 virtual void MaxAbsVz(IssmDouble* pmaxabsvz)=0;
260 virtual IssmDouble MassFlux(IssmDouble* segment)=0;
[16388]261 virtual IssmDouble MassFlux(IssmDouble x1,IssmDouble y1, IssmDouble x2, IssmDouble y2,int segment_id)=0;
[15129]262 virtual void ElementResponse(IssmDouble* presponse,int response_enum)=0;
[12471]263 virtual IssmDouble IceVolume(void)=0;
[16275]264 virtual IssmDouble IceVolumeAboveFloatation(void)=0;
[12773]265 virtual IssmDouble TotalSmb(void)=0;
[16787]266 virtual IssmDouble Misfit(int modelenum,int observationenum,int weightsenum)=0;
[17047]267 virtual IssmDouble MisfitArea(int weightsenum)=0;
[16849]268 virtual int VertexConnectivity(int vertexindex)=0;
[16850]269 virtual void VerticalSegmentIndices(int** pindices,int* pnumseg)=0;
[4055]270
[14589]271 #ifdef _HAVE_GIA_
[14807]272 virtual void GiaDeflection(Vector<IssmDouble>* wg,Vector<IssmDouble>* dwgdt,IssmDouble* x,IssmDouble* y)=0;
[14589]273 #endif
274
[13216]275 virtual void Gradj(Vector<IssmDouble>* gradient,int control_type,int control_index)=0;
[16314]276 virtual IssmDouble ThicknessAbsMisfit(void)=0;
277 virtual IssmDouble SurfaceAbsVelMisfit(void)=0;
278 virtual IssmDouble SurfaceRelVelMisfit(void)=0;
279 virtual IssmDouble SurfaceLogVelMisfit(void)=0;
280 virtual IssmDouble SurfaceLogVxVyMisfit(void)=0;
281 virtual IssmDouble SurfaceAverageVelMisfit(void)=0;
282 virtual IssmDouble ThicknessAbsGradient(void)=0;
283 virtual IssmDouble ThicknessAlongGradient(void)=0;
284 virtual IssmDouble ThicknessAcrossGradient(void)=0;
285 virtual IssmDouble BalancethicknessMisfit(void)=0;
286 virtual IssmDouble RheologyBbarAbsGradient(void)=0;
287 virtual IssmDouble DragCoefficientAbsGradient(void)=0;
[13216]288 virtual void ControlInputGetGradient(Vector<IssmDouble>* gradient,int enum_type,int control_index)=0;
[12471]289 virtual void ControlInputSetGradient(IssmDouble* gradient,int enum_type,int control_index)=0;
290 virtual void ControlInputScaleGradient(int enum_type, IssmDouble scale)=0;
[16494]291 virtual void ControlToVectors(Vector<IssmPDouble>* vector_control, Vector<IssmPDouble>* vector_gradient,int control_enum)=0;
[13216]292 virtual void GetVectorFromControlInputs(Vector<IssmDouble>* gradient,int control_enum,int control_index,const char* data)=0;
[12471]293 virtual void SetControlInputsFromVector(IssmDouble* vector,int control_enum,int control_index)=0;
294 virtual void InputControlUpdate(IssmDouble scalar,bool save_parameter)=0;
[14796]295
[16442]296 virtual void UpdateConstraintsExtrudeFromBase(void)=0;
297 virtual void UpdateConstraintsExtrudeFromTop(void)=0;
298
[15962]299 virtual void MigrateGroundingLine(IssmDouble* sheet_ungrounding)=0;
[17579]300 virtual void FSContactMigration(Vector<IssmDouble>* vertexgrounded,Vector<IssmDouble>* vertexfloating)=0;
[15386]301 virtual void PotentialUngrounding(Vector<IssmDouble>* potential_sheet_ungrounding)=0;
302 virtual int UpdatePotentialUngrounding(IssmDouble* potential_sheet_ungrounding,Vector<IssmDouble>* vec_nodes_on_iceshelf,IssmDouble* nodes_on_iceshelf)=0;
303
[3683]304};
305#endif
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