| [16594] | 1 | #!/bin/bash
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| 2 | #This bash script calls the nightlyrun.m matlab file to run our nightly test decks.
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| 3 | #It then processes the results and sends an email to the Ice developpers.
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| 4 |
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| 5 | #some functions
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| 6 | function timer() #{{{
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| 7 | {
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| 8 | if [[ $# -eq 0 ]]; then
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| 9 | echo $(date '+%s')
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| 10 | else
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| 11 | local stime=$1
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| 12 | etime=$(date '+%s')
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| 13 |
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| 14 | if [[ -z "$stime" ]]; then stime=$etime; fi
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| 15 |
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| 16 | dt=$((etime - stime))
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| 17 | ds=$((dt % 60))
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| 18 | dm=$(((dt / 60) % 60))
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| 19 | dh=$((dt / 3600))
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| 20 | printf '%d:%02d:%02d' $dh $dm $ds
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| 21 | fi
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| 22 | } #}}}
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| 23 | function todaydate() #{{{
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| 24 | {
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| 25 | suffix=`date | awk '{printf("%s-%s-%s %s",$2,$3,$6,$4);}'`
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| 26 | echo $suffix;
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| 27 | } #}}}
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| 28 | function host_name() #{{{
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| 29 | {
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| 30 | #return host name depending on the OS
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| 31 | if [ "$1" = "win7" ]
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| 32 | then
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| 33 | HOST_NAME=`hostname | sed 's/-//g'`;
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| 34 | else
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| 35 | HOST_NAME=`hostname -s | sed 's/-//g'`;
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| 36 | fi
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| 37 | echo $HOST_NAME;
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| 38 | } #}}}
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| 39 | function pause() #{{{
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| 40 | {
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| 41 | pid=`ps aux -W | grep $1 | awk '{printf("%s\n",$1);}'`
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| 42 |
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| 43 | while [ -n "$pid" ]
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| 44 | do
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| 45 | pid=`ps aux -W | grep $1 | awk '{printf("%s\n",$1);}'`
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| 46 | done
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| 47 | }
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| 48 | #}}}
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| 49 |
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| 50 | #Get configuration
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| 51 | #Source config file{{{
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| 52 | if [ $# -ne 1 ];
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| 53 | then
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| 54 | #no config file specified: exit
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| 55 | echo "no config file specified. Exiting..." >&2 # Error message to stderr.
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| 56 | rm NIGHTLYLOCK
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| 57 | exit 1
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| 58 | fi
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| 59 | if [ ! -f "$1" ]
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| 60 | then
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| 61 | echo "File $1 not found!" >&2 # Error message to stderr.
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| 62 | rm NIGHTLYLOCK
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| 63 | exit 1
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| 64 | fi
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| 65 | source $1;
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| 66 | #}}}
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| 67 | #Export ISSM_* variables{{{
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| 68 | export ISSM_DIR
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| 69 | export ISSM_ARCH
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| 70 | #}}}
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| 71 | #Initialize variables {{{
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| 72 | TODAY=$(todaydate);
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| 73 | HOST_NAME=$(host_name $OS);
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| 74 | OS=$(uname -s)
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| 75 | START_TIME=$(timer);
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| 76 | ISSM_RELEASE=$(basename $(echo $REPOSITORY));
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| 77 | USER=$(whoami);
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| 78 | INIT_PATH=$(pwd);
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| 79 | #}}}
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| 80 |
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| 81 | #Installation ISSM
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| 82 | #Checkout/update/none ISSM if requested (ISSM_INSTALLATION){{{
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| 83 | if [ "$ISSM_INSTALLATION" == "checkout" ]
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| 84 | then
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| 85 | rm -rf $ISSM_RELEASE
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| 86 | svn checkout "$REPOSITORY"
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| 87 | elif [ "$ISSM_INSTALLATION" == "update" ]
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| 88 | then
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| 89 | cd $ISSM_DIR
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| 90 | svn update
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| 91 | elif [ "$ISSM_INSTALLATION" == "none" ]
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| 92 | then
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| 93 | echo "Skipping ISSM installation"
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| 94 | else
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| 95 | echo "ISSM_INSTALLATION supported values are: checkout, update and none. Exiting..." >&2 # Error message to stderr.
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| 96 | exit 1
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| 97 | fi
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| 98 | source $ISSM_DIR/etc/environment.sh
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| 99 | #}}}
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| 100 | #create matlab's installation sript {{{
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| 101 | cat << END > $ISSM_DIR/externalpackages/matlab/install.sh
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| 102 | #!/bin/bash
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| 103 | rm -rf install
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| 104 | ln -s $MATLAB_PATH install
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| 105 | END
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| 106 | #}}}
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| 107 | #install/copy/none external packages (ISSM_EXTERNALPACKAGES){{{
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| 108 | if [ "$ISSM_EXTERNALPACKAGES" == "install" ]
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| 109 | then
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| 110 |
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| 111 | cd $ISSM_DIR/externalpackages
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| 112 |
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| 113 | #number of packages:
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| 114 | NUMPACKAGES=$(($(echo $EXTERNALPACKAGES | wc -w )/2))
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| 115 |
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| 116 | for ((i=1;i<=$NUMPACKAGES;i++))
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| 117 | do
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| 118 | NUM1=$((2*$i-1))
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| 119 | NUM2=$((2*$i))
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| 120 | PACKAGENAME=$(echo $EXTERNALPACKAGES | cut -d " " -f $NUM1-$NUM1)
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| 121 | PACKAGEINST=$(echo $EXTERNALPACKAGES | cut -d " " -f $NUM2-$NUM2)
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| 122 |
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| 123 | cd $PACKAGENAME
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| 124 | echo "======================================================";
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| 125 | echo " Installing $PACKAGENAME (see compil.log) ";
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| 126 | echo "======================================================";
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| 127 | ./$PACKAGEINST > compil.log
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| 128 | if [ $? -ne 0 ]; then
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| 129 | echo "======================================================";
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| 130 | echo " ERROR: installation of $PACKAGENAME failed ";
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| 131 | echo "======================================================";
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| 132 | fi
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| 133 | source $ISSM_DIR/etc/environment.sh
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| 134 | cd ..
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| 135 | done
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| 136 |
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| 137 | elif [ "$ISSM_EXTERNALPACKAGES" == "copy" ]
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| 138 | then
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| 139 | cd $ISSM_DIR
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| 140 | rm -rf externalpackages
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| 141 | cp -Rf $EXTERNALPACKAGESDIR ./
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| 142 | elif [ "$ISSM_EXTERNALPACKAGES" == "link" ]
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| 143 | then
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| 144 | cd $ISSM_DIR
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| 145 | rm -rf externalpackages
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| 146 | ln -s $EXTERNALPACKAGESDIR .
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| 147 | elif [ "$ISSM_EXTERNALPACKAGES" == "none" ]
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| 148 | then
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| 149 | echo "Skipping external packages installation"
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| 150 | else
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| 151 | echo "ISSM_EXTERNALPACKAGES supported values are: install, copy and none. Exiting..." >&2 # Error message to stderr.
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| 152 | exit 1
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| 153 | fi
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| 154 | source $ISSM_DIR/etc/environment.sh
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| 155 | #}}}
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| 156 | #ISSM compilation yes/no (ISSM_COMPILATION) {{{
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| 157 | if [ "$ISSM_COMPILATION" == "yes" ]
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| 158 | then
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| 159 | cd $ISSM_DIR
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| 160 | make uninstall
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| 161 | make clean
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| 162 | make distclean
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| 163 | ./scripts/automakererun.sh
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| 164 | cat > configure.sh << EOF
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| 165 | ./configure $ISSM_CONFIG
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| 166 | EOF
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| 167 | chmod 700 configure.sh
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| 168 | ./configure.sh
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| 169 |
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| 170 | #4: compile and install ISSM
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| 171 | if [ $NUMCPUS_INSTALL -gt 1 ]
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| 172 | then
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| 173 | echo "Making with " $NUMCPUS_INSTALL " cpus"
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| 174 | make -j $NUMCPUS_INSTALL install
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| 175 | else
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| 176 | make install
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| 177 | fi
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| 178 | elif [ "$ISSM_COMPILATION" == "no" ]
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| 179 | then
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| 180 | echo "Skipping ISSM compilation"
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| 181 | else
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| 182 | echo "ISSM_COMPILATION supported values are: yes and no. Exiting..." >&2 # Error message to stderr.
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| 183 | exit 1
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| 184 | fi
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| 185 | #}}}
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| 186 |
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| 187 | #Prepare info.log
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| 188 | #{{{
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| 189 | rm -rf $ISSM_DIR/nightlylog
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| 190 | mkdir $ISSM_DIR/nightlylog
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| 191 | INSTALL_TIME=$(timer)
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| 192 | ELAPSED=$(timer $START_TIME)
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| 193 | VERSION=$(svnversion $ISSM_DIR)
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| 194 | cat << END > $ISSM_DIR/nightlylog/info.log
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| 195 | name: $(echo $NAME)
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| 196 | today: $(echo $TODAY)
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| 197 | user: $(echo $USER)
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| 198 | host: $(echo $HOST_NAME)
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| 199 | OS: $(echo $OS)
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| 200 | release: $(echo $ISSM_RELEASE)
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| 201 | init_path: $(echo $INIT_PATH)
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| 202 | is_matlab: $(echo $MATLAB_TEST)
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| 203 | is_python: $(echo $PYTHON_TEST)
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| 204 | elapsed_install: $(echo $ELAPSED)
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| 205 | version: $(echo $VERSION)
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| 206 | END
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| 207 | #}}}
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| 208 |
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| 209 | #matlab tests
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| 210 | if [ $MATLAB_TEST -eq 1 ]; then
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| 211 | #Launch all tests on different cpus {{{
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| 212 | MATLAB_START_TIME=$(timer);
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| 213 | for (( i=1;i<=$NUMCPUS_RUN;i++ ))
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| 214 | do
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| 215 | #Launch matlab and the nightly run script
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| 216 | cat > $ISSM_DIR/nightlylog/matlab_run$i.m << EOF
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| 217 | warning off %necessary to avoid a info.log of several Go for parallel runs
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| 218 | try,
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| 219 | $(if [ "$MATLAB_NROPTIONS" = "" ]
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| 220 | then
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| 221 | echo "runme('output','nightly','rank',$i,'numprocs',$NUMCPUS_RUN);"
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| 222 | else
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| 223 | echo "runme($MATLAB_NROPTIONS,'output','nightly','rank',$i,'numprocs',$NUMCPUS_RUN);"
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| 224 | fi
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| 225 | )
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| 226 | catch me,
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| 227 | %An error occured, get report and exit
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| 228 | message=getReport(me)
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| 229 | directory=strsplit(pwd,'/');
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| 230 | fid=fopen([issmdir '/nightlylog/matlaberror.log'], 'at');
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| 231 | fprintf(fid,'\nMatlab error occured in: %s\n\n',directory{end});
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| 232 | fprintf(fid,'%s',message);
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| 233 | fclose(fid);
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| 234 | end
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| 235 | disp('MATLABEXITEDCORRECTLY');
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| 236 | exit
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| 237 | EOF
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| 238 | cd $ISSM_DIR/test/NightlyRun
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| 239 | matlab -nojvm -nosplash -r "addpath $ISSM_DIR/src/m/dev; devpath; addpath $ISSM_DIR/nightlylog/; matlab_run$i" -logfile $ISSM_DIR/nightlylog/matlab_log$i.log &
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| 240 | done
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| 241 |
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| 242 | #wait until matlab closes
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| 243 | if [ "$OS" = "win7" ]; then
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| 244 | pause MATLAB
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| 245 | else
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| 246 | wait
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| 247 | fi
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| 248 |
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| 249 | #concatenate reports
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| 250 | cd $ISSM_DIR/nightlylog/
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| 251 | rm matlab_log.log
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| 252 | for (( i=1;i<=$NUMCPUS_RUN;i++ ))
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| 253 | do
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| 254 | cat matlab_log$i.log >> matlab_log.log
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| 255 | done
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| 256 | #}}}
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| 257 | #Complete info.log {{{
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| 258 | if [ $(cat matlab_log.log | grep "MATLABEXITEDCORRECTLY" | wc -l) -eq $NUMCPUS_RUN ]
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| 259 | then
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| 260 | MATLABCRASH=0
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| 261 | else
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| 262 | MATLABCRASH=1
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| 263 | fi
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| 264 | ELAPSED=$(timer $MATLAB_START_TIME)
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| 265 | cat << END >> $ISSM_DIR/nightlylog/info.log
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| 266 | elapsed_matlab: $(echo $ELAPSED)
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| 267 | matlab_crash: $(echo $MATLABCRASH)
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| 268 | END
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| 269 | #}}}
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| 270 | fi
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| 271 |
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| 272 | #python tests
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| 273 | if [ $PYTHON_TEST -eq 1 ]; then
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| 274 | #Launch all tests on different cpus {{{
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| 275 | PYTHON_START_TIME=$(timer);
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| 276 | export PYTHONSTARTUP=$ISSM_DIR/src/m/dev/devpath.py
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| 277 | for (( i=1;i<=$NUMCPUS_RUN;i++ ))
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| 278 | do
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| 279 | cd $ISSM_DIR/test/NightlyRun
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| 280 | ./runme.py --output=nightly --rank=$i --numprocs=$NUMCPUS_RUN $PYTHON_NROPTIONS 2>&1 > $ISSM_DIR/nightlylog/python_log$i.log &
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| 281 | done
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| 282 |
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| 283 | #wait until python closes
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| 284 | if [ "$OS" = "win7" ]; then
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| 285 | pause MATLAB
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| 286 | else
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| 287 | wait
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| 288 | fi
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| 289 |
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| 290 | #concatenate reports
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| 291 | cd $ISSM_DIR/nightlylog/
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| 292 | rm python_log.log
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| 293 | for (( i=1;i<=$NUMCPUS_RUN;i++ ))
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| 294 | do
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| 295 | cat python_log$i.log >> python_log.log
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| 296 | done
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| 297 | #}}}
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| 298 | #Complete info.log {{{
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| 299 | if [ $(cat python_log.log | grep "PYTHONEXITEDCORRECTLY" | wc -l) -eq $NUMCPUS_RUN ]
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| 300 | then
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| 301 | PYTHONCRASH=0
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| 302 | else
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| 303 | PYTHONCRASH=1
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| 304 | fi
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| 305 | ELAPSED=$(timer $PYTHON_START_TIME)
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| 306 | cat << END >> $ISSM_DIR/nightlylog/info.log
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| 307 | elapsed_python: $(echo $ELAPSED)
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| 308 | python_crash: $(echo $PYTHONCRASH)
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| 309 | END
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| 310 | #}}}
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| 311 | fi
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| 312 |
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| 313 | #complete info.log
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| 314 | #{{{
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| 315 | ELAPSED=$(timer $START_TIME)
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| 316 | cat << END >> $ISSM_DIR/nightlylog/info.log
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| 317 | elapsed_total: $(echo $ELAPSED)
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| 318 | END
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| 319 | #}}}
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| 320 |
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| 321 | #Send Report
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| 322 | #Build html report {{{
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| 323 | cd $ISSM_DIR/nightlylog/
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| 324 | sh ../scripts/report.sh
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| 325 | echo "html report located in $ISSM_DIR/nightlylog/report.html"
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| 326 | #}}}
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| 327 | #send mail if requested (SKIPMAIL) {{{
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| 328 | if [ "$SKIPMAIL" != "yes" ]
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| 329 | then
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| 330 | echo "sending report..."
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| 331 | for i in `echo $MAILINGLIST`; do
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| 332 |
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| 333 | cat - $ISSM_DIR/nightlylog/report.html <<HERE | /usr/lib/sendmail -oi -t
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| 334 | From: "ISSM Nightly run" <$EMAIL_ADRESS>
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| 335 | To: $i
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| 336 | Subject: ISSM nightly runs report: $NAME
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| 337 | Mime-Version: 1.0
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| 338 | Content-Type: text/html
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| 339 | HERE
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| 340 | done
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| 341 | fi
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| 342 | #}}}
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| 343 |
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| 344 | #remove lock file
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| 345 | #{{{
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| 346 | cd $ISSM_DIR/../
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| 347 | rm NIGHTLYLOCK
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| 348 | #}}}
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![(please configure the [header_logo] section in trac.ini)](/trac/issm/chrome/common/trac_banner.png)
