source: issm/oecreview/Archive/26740-27031/ISSM-26994-26995.diff@ 27032

../trunk-jpl/src/m/classes/clusters/discovery.m

@@ -35 +35 @@
                 function disp(cluster) % {{{
                         %  display the object
                         disp(sprintf('class ''%s'' object ''%s'' = ',class(cluster),inputname(1)));
-                        disp(sprintf('    name: %s',cluster.name));
+                        disp(sprintf('    name:  %s',cluster.name));
                         disp(sprintf('    login: %s',cluster.login));
-                        disp(sprintf('    numnodes: %i',cluster.numnodes));
+                        disp(sprintf('    numnodes:    %i',cluster.numnodes));
                         disp(sprintf('    cpuspernode: %i',cluster.cpuspernode));
+                        disp(sprintf('    time: %i hours',cluster.time));
+                        disp(sprintf('    memory: %i Gb',cluster.memory));
+                        disp(sprintf('    email: %s (notifications: BEGIN,END,FAIL)',cluster.email));
                         disp(sprintf('    port: %i',cluster.port));
-                        disp(sprintf('    codepath: %s',cluster.codepath));
+                        disp(sprintf('    codepath:      %s',cluster.codepath));
                         disp(sprintf('    executionpath: %s',cluster.executionpath));
                         disp(sprintf('    interactive: %i',cluster.interactive));
-                        disp(sprintf('    time: %i hours',cluster.time));
-                        disp(sprintf('    memory: %i Gb',cluster.memory));
                 end
                 %}}}
                 function numprocs=nprocs(cluster) % {{{
@@ -90 +91 @@
                 end
                 %}}}
                 function BuildQueueScript(cluster,dirname,modelname,solution,io_gather,isvalgrind,isgprof,isdakota,isoceancoupling) % {{{
-                        error('not implemented yet');
+
+                        if(isvalgrind), disp('valgrind not supported by cluster, ignoring...'); end
+                        if(isgprof),    disp('gprof not supported by cluster, ignoring...'); end
+
+                        %write queuing script
+                        fid=fopen([modelname '.queue'],'w');
+                        fprintf(fid,'#!/bin/bash\n');
+                        fprintf(fid,'#SBATCH --job-name=%s\n',modelname);
+                        fprintf(fid,'#SBATCH -o %s.outlog \n',modelname);
+                        fprintf(fid,'#SBATCH -e %s.errlog \n',modelname);
+                        fprintf(fid,'#SBATCH --nodes=%i\n',cluster.numnodes);
+                        fprintf(fid,'#SBATCH --ntasks-per-node=%i\n',cluster.cpuspernode);
+                        fprintf(fid,'#SBATCH --time=%s\n',datestr(cluster.time/24,'HH:MM:SS')); %walltime is in HH:MM:SS format. cluster.time is in hour
+                        fprintf(fid,'#SBATCH --mem=%iG\n',cluster.memory);
+                        if ~isempty(cluster.email)
+                                fprintf(fid,'#SBATCH --mail-type=%s\n',cluster.email);
+                        end
+                        fprintf(fid,'\n');
+                        fprintf(fid,'export ISSM_DIR="%s/../"\n',cluster.codepath);
+                        fprintf(fid,'source $ISSM_DIR/etc/environment.sh\n');
+                        fprintf(fid,'cd %s/%s\n\n',cluster.executionpath,dirname);
+                        fprintf(fid,'mpirun -n %i %s/issm.exe %s %s %s\n',cluster.nprocs(), cluster.codepath,solution,[cluster.executionpath '/' dirname],modelname);
+                        if ~io_gather, %concatenate the output files:
+                                fprintf(fid,'cat %s.outbin.* > %s.outbin',modelname,modelname);
+                        end
+                        fclose(fid);
+
+                        %in interactive mode, create a run file, and errlog and outlog file
+                        if cluster.interactive,
+                                fid=fopen([modelname '.run'],'w');
+                                fprintf(fid,'mpirun -n %i %s/issm.exe %s %s %s\n',cluster.nprocs(), cluster.codepath,solution,[cluster.executionpath '/' dirname],modelname);
+                                if ~io_gather, %concatenate the output files:
+                                        fprintf(fid,'cat %s.outbin.* > %s.outbin',modelname,modelname);
+                                end
+                                fclose(fid);
+                                fid=fopen([modelname '.errlog'],'w');
+                                fclose(fid);
+                                fid=fopen([modelname '.outlog'],'w');
+                                fclose(fid);
+                        end
                 end %}}}
                 function UploadQueueJob(cluster,modelname,dirname,filelist) % {{{