source: issm/oecreview/Archive/24307-24683/ISSM-24330-24331.diff@ 24684

Last change on this file since 24684 was 24684, checked in by Mathieu Morlighem, 5 years ago

CHG: added new review
File size: 8.6 KB

  • ../trunk-jpl/externalpackages/mpich/install-3.2-linux64.sh

     
    11#!/bin/bash
    22set -eu
    33
    4 #Some cleanup
    5 rm -rf src install mpich-3.2
    6 mkdir src install
    74
    8 #Download from ISSM server
    9 $ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/mpich-3.2.tar.gz' 'mpich-3.2.tar.gz'
     5## Constants
     6#
     7VER="3.2"
    108
    11 #Untar
    12 tar -zxvf  mpich-3.2.tar.gz
     9# Download source
     10$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/mpich-${VER}.tar.gz" "mpich-${VER}.tar.gz"
    1311
    14 #Move mpich into src directory
    15 mv mpich-3.2/* src
    16 rm -rf mpich-3.2
     12# Unpack source
     13tar -zxvf  mpich-$VER.tar.gz
    1714
    18 #Configure mpich
     15# Cleanup
     16rm -rf src install
     17mkdir src install
     18
     19# Move source into 'src' directory
     20mv mpich-$VER/* src
     21rm -rf mpich-$VER
     22
     23# Configure
    1924cd src
    2025./configure \
    21         --prefix="$ISSM_DIR/externalpackages/mpich/install" \
     26        --prefix="${ISSM_DIR}/externalpackages/mpich/install" \
    2227        --enable-shared
    2328
    24 #Compile mpich (this new version supports parallel make)
     29# Compile and install
    2530if [ $# -eq 0 ]; then
    2631        make
     32        make install
    2733else
    2834        make -j $1
     35        make -j $1 install
    2936fi
    30 make install
     37
     38# Return to initial directory
     39cd ..

  • ../trunk-jpl/externalpackages/petsc/install-3.7-linux64.sh

     
    11#!/bin/bash
    22set -eu
    33
    4 #Some cleanup
    5 rm -rf install petsc-3.7.6 src
     4
     5## Constants
     6#
     7VER="3.7.6"
     8
     9# Download source
     10$ISSM_DIR/scripts/DownloadExternalPackage.sh "https://issm.ess.uci.edu/files/externalpackages/petsc-lite-${VER}.tar.gz" "petsc-${VER}.tar.gz"
     11
     12# Unpack source
     13tar -zxvf  petsc-$VER.tar.gz
     14
     15# Cleanup
     16rm -rf install src
    617mkdir install src
    718
    8 #Download from ISSM server
    9 $ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.7.6.tar.gz' 'petsc-3.7.6.tar.gz'
     19# Move source to 'src' directory
     20mv petsc-$VER/* src/
     21rm -rf petsc-$VER
    1022
    11 #Untar and move petsc to install directory
    12 tar -zxvf  petsc-3.7.6.tar.gz
    13 mv petsc-3.7.6/* src/
    14 rm -rf petsc-3.7.6
    15 
    16 #configure
     23# Configure
    1724cd src
    1825./config/configure.py \
    19         --prefix="$ISSM_DIR/externalpackages/petsc/install" \
    20         --with-mpi-dir="$ISSM_DIR/externalpackages/mpich/install" \
    21         --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
     26        --prefix="${ISSM_DIR}/externalpackages/petsc/install" \
     27        --PETSC_DIR="${ISSM_DIR}/externalpackages/petsc/src" \
     28        --with-mpi-dir="${ISSM_DIR}/externalpackages/mpich/install" \
     29        --with-blas-lib="-L${ISSM_DIR}/externalpackages/lapack/install/lib -lblas" \
     30        --with-lapack-lib="-L${ISSM_DIR}/externalpackages/lapack/install/lib -llapack" \
    2231        --with-debugging=0 \
    2332        --with-valgrind=0 \
    2433        --with-x=0 \
    2534        --with-ssl=0 \
    2635        --with-shared-libraries=1 \
     36        --download-zlib=1\
     37        --download-hdf5=1 \
     38        --download-netcdf=1 \
    2739        --download-metis=1 \
    2840        --download-parmetis=1 \
    29         --download-mumps=1 \
    3041        --download-scalapack=1 \
    31         --download-fblaslapack=1 \
    32         --with-pic=1
     42        --download-mumps=1
    3343
    34 #Compile and intall
    35 make
    36 make install
     44# Compile and install
     45if [ $# -eq 0 ]; then
     46        make
     47        make install
     48else
     49        make -j $1
     50        make -j $1 install
     51fi
     52
     53# Return to initial directory
     54cd ..

  • ../trunk-jpl/jenkins/linux64_ross

     
    22# 1: ISSM general configuration #
    33#-------------------------------#
    44
    5 #MATLAB path
     5# MATLAB path
    66MATLAB_PATH="/usr/local/MATLAB/R2015a"
    77
    8 #ISSM CONFIGURATION
    9 ISSM_CONFIG='--prefix=$ISSM_DIR \
     8# ISSM CONFIGURATION
     9ISSM_CONFIG='\
     10        --prefix=$ISSM_DIR \
    1011        --disable-static \
    1112        --with-matlab-dir=$MATLAB_PATH \
    1213        --with-fortran-lib="-L/usr/lib/gcc/x86_64-linux-gnu/4.9 -lgfortran" \
    13         --with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include  \
     14        --with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include \
    1415        --with-mpi-libflags="-L${ISSM_DIR}/externalpackages/mpich/install/lib -lmpi -lmpicxx -lmpifort" \
    1516        --with-blas-lapack-dir=$ISSM_DIR/externalpackages/lapack/install \
    1617        --with-metis-dir=$ISSM_DIR/externalpackages/petsc/install \
    … …  
    3637# 3: External packages installation #
    3738#-----------------------------------#
    3839
    39 #List of external packages to be installed and their installation scripts
     40# List of external packages to be installed and their installation scripts
    4041EXTERNALPACKAGES="
    4142        autotools       install.sh
    4243        cmake           install.sh
    43         mpich           install-3.3.sh
     44        mpich           install-3.2-linux64.sh
    4445        lapack          install-3.8-linux.sh
    45         petsc           install-3.11-linux.sh
     46        petsc           install-3.7-linux64.sh
    4647        triangle        install-linux64.sh
    4748        chaco           install.sh
    4849        m1qn3           install.sh

  • ../trunk-jpl/jenkins/linux64_ross_python

     
    1 
    21#-------------------------------#
    32# 1: ISSM general configuration #
    43#-------------------------------#
    … …  
    98        --with-python-dir=/usr \
    109        --with-python-numpy-dir=/usr/local/lib/python2.7/dist-packages/numpy \
    1110        --with-fortran-lib="-L/usr/lib/gcc/x86_64-linux-gnu/4.9 -lgfortran" \
    12         --with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include  \
    13         --with-mpi-libflags="-L$ISSM_DIR/externalpackages/mpich/install/lib -lmpi -lmpicxx -lmpifort" \
     11        --with-mpi-include=$ISSM_DIR/externalpackages/mpich/install/include \
     12        --with-mpi-libflags="-L${ISSM_DIR}/externalpackages/mpich/install/lib -lmpi -lmpicxx -lmpifort" \
     13        --with-blas-lapack-dir=$ISSM_DIR/externalpackages/lapack/install \
    1414        --with-metis-dir=$ISSM_DIR/externalpackages/petsc/install \
    15         --with-blas-lapack-dir=$ISSM_DIR/externalpackages/petsc/install \
    1615        --with-scalapack-dir=$ISSM_DIR/externalpackages/petsc/install \
    1716        --with-mumps-dir=$ISSM_DIR/externalpackages/petsc/install \
    1817        --with-petsc-dir=$ISSM_DIR/externalpackages/petsc/install \
    1918        --with-triangle-dir=$ISSM_DIR/externalpackages/triangle/install \
    20         --with-chaco-dir="$ISSM_DIR/externalpackages/chaco/install" \
     19        --with-chaco-dir=$ISSM_DIR/externalpackages/chaco/install \
    2120        --with-m1qn3-dir=$ISSM_DIR/externalpackages/m1qn3/install \
     21        --with-semic-dir=$ISSM_DIR/externalpackages/semic/install \
    2222        --with-numthreads=4 \
    2323        --enable-development \
    24         --enable-debugging '
     24        --enable-debugging \
     25'
    2526
    26 #PYTHON and MATLAB testing
     27# Test suites
    2728MATLAB_TEST=0
    2829PYTHON_TEST=1
     30JAVASCRIPT_TEST=0
     31EXAMPLES_TEST=0
    2932
    3033#-----------------------------------#
    3134# 3: External packages installation #
    3235#-----------------------------------#
    3336
    34 #List of external packages to be installed and their installation scripts
    35 EXTERNALPACKAGES="autotools     install.sh
    36                                                 cmake         install.sh
    37                                                 mpich         install-3.2-linux64.sh
    38                                                 petsc         install-3.7-linux64.sh
    39                                                 triangle      install-linux64.sh
    40                                                 chaco         install.sh
    41                                                 m1qn3         install.sh
    42                                                 shell2junit   install.sh"
     37# List of external packages to be installed and their installation scripts
     38EXTERNALPACKAGES="
     39        autotools       install.sh
     40        cmake           install.sh
     41        mpich           install-3.2-linux64.sh
     42        lapack          install-3.8-linux.sh
     43        petsc           install-3.7-linux64.sh
     44        triangle        install-linux64.sh
     45        chaco           install.sh
     46        m1qn3           install.sh
     47        semic           install.sh
     48        shell2junit     install.sh
     49"
    4350
    4451#-----------------#
    4552# 4: test options #
    … …  
    4754
    4855#number of cpus used in ISSM installation and compilation (one is usually
    4956#safer as some packages are very sensitive to parallel compilation)
    50 NUMCPUS_INSTALL=10
     57NUMCPUS_INSTALL=8
    5158
    5259#number of cpus used in the nightly runs.
    53 NUMCPUS_RUN=5
     60NUMCPUS_RUN=8
    5461
    5562#Nightly run options. The matlab routine runme.m will be called
    5663#as follows: runme($MATLAB_NROPTIONS). The options must be understandable

  • ../trunk-jpl/jenkins/linux64_ross_se

     
    4141EXTERNALPACKAGES="
    4242        autotools       install.sh
    4343        cmake           install.sh
    44         mpich           install-3.3.sh
     44        mpich           install-3.2-linux64.sh
    4545        lapack          install-3.8-linux.sh
    46         petsc           install-3.11-linux.sh
     46        petsc           install-3.7-linux64.sh
    4747        triangle        install-linux64.sh
    4848        chaco           install.sh
    4949        m1qn3           install.sh
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