source: issm/oecreview/Archive/23390-24306/ISSM-23610-23611.diff

../trunk-jpl/m4/issm_options.m4

@@ -226 +226 @@
                 elif test $VENDOR = intel-lonestar; then
                         export CC=icc
                         export CXX=icpc
+                elif test $VENDOR = intel-aurora; then
+                        export CC=icc
+                        export CXX=icpc
+                        export CXXFLAGS=" -O3 -D_INTEL_LINUX_ -DMPICH_IGNORE_CXX_SEEK"
+                        export CFLAGS=" -O3 -D_INTEL_LINUX_ -DMPICH_IGNORE_CXX_SEEK"
                 elif test $VENDOR = intel-discover; then
                         export CC=icc
                         export CXX=icpc

../trunk-jpl/externalpackages/petsc/install-3.6-aurora.sh

@@ +1 @@
+#!/bin/bash
+set -eu
+
+#Some cleanup
+rm -rf install petsc-3.6.3 src
+mkdir install src
+
+#Download from ISSM server
+$ISSM_DIR/scripts/DownloadExternalPackage.sh 'https://issm.ess.uci.edu/files/externalpackages/petsc-lite-3.6.3.tar.gz' 'petsc-3.6.3.tar.gz'
+
+#Untar and move petsc to install directory
+tar -zxvf  petsc-3.6.3.tar.gz
+mv petsc-3.6.3/* src/
+rm -rf petsc-3.6.3
+
+#--with-cc=icc --with-cxx=icpc --with-fc=ifort --with-f77=ifort \
+
+#configure
+cd src
+./config/configure.py \
+        --prefix="$ISSM_DIR/externalpackages/petsc/install" \
+        --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
+        --with-blas-lapack-dir="/opt/intel/composer_xe_2013.5.192/mkl/lib/intel64/" \
+        --with-mpi-dir="/opt/intel/impi/4.1.3/intel64/" \
+        --known-mpi-shared-libraries=1 \
+        --with-debugging=0 \
+        --with-valgrind=0 \
+        --with-x=0 \
+        --with-ssl=0 \
+        --with-batch=1  \
+        --with-shared-libraries=1 \
+        --download-metis=1 \
+        --download-parmetis=1 \
+        --download-mumps=1 \
+        --download-scalapack=1 
+
+#prepare script to reconfigure petsc
+cat > script.queue << EOF
+#PBS -S /bin/bash
+#PBS -l select=1:ncpus=1:mpiprocs=1 
+#PBS -l walltime=1:00:00
+#PBS -m e
+
+export RUN_DIR=$ISSM_DIR/externalpackages/petsc/src/
+
+source /usr/share/Modules/init/bash
+module load intel/cluster-toolkit-2013.5.192
+
+export PATH="$PATH:.:/opt/intel/impi/4.1.3/intel64/"
+export MPI_GROUP_MAX=64
+cd $RUN_DIR
+mpirun -np 1 ./conftest-arch-linux2-c-opt
+EOF
+
+#print instructions
+echo "== Now: cd src/ "
+echo "== qsub -q debugq script.queue "
+echo "== Then run reconfigure script generated by PETSc and follow instructions"