source: issm/oecreview/Archive/16133-16554/ISSM-16529-16530.diff

../trunk-jpl/externalpackages/petsc/install-3.4-pleiades-mpich2.sh

@@ -1 @@
-#!/bin/bash
-
-#Some cleanup
-rm -rf install petsc-3.4.2 src
-mkdir install src
-
-#Download from ISSM server
-$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/petsc-lite-3.4.2.tar.gz' 'petsc-3.4.2.tar.gz'
-
-#Untar and move petsc to install directory
-tar -zxvf  petsc-3.4.2.tar.gz
-mv petsc-3.4.2/* src/
-rm -rf petsc-3.4.2
-
-#configure
-cd src
-./config/configure.py \
- --prefix="$ISSM_DIR/externalpackages/petsc/install" \
- --PETSC_ARCH="$ISSM_ARCH" \
- --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
- --with-batch=1  \
- --with-debugging=0 \
- --with-shared-libraries=1 \
- --known-mpi-shared-libraries=1 \
- --with-mpi=1 \
- --with-mpi-lib="/nasa/mvapich2/1.6.sles11/gcc/lib/libmpich.a"\
- --with-mpi-include="/nasa/mvapich2/1.6.sles11/gcc/include" \
- --download-f-blas-lapack=yes \
- --download-scalapack=yes \
- --download-blacs=yes \
- --download-mumps=yes \
- --download-metis=yes \
- --download-parmetis=yes \
- --download-trilinos=yes \
- --download-euclid=yes \
- --download-hypre=yes \
- --COPTFLAGS="-lmpich" \
- --FOPTFLAGS="-lmpich" \
- --CXXOPTFLAGS="-lmpich"
-
-#prepare script to reconfigure petsc
-cat > script.queue << EOF
-#PBS -S /bin/bash
-#PBS -l select=1:ncpus=1:model=wes 
-#PBS -l walltime=200 
-#PBS -W group_list=s1010
-#PBS -m e 
-
-. /usr/share/modules/init/bash 
-module load mpi-mvapich2/1.6/gcc
-module load gcc/4.7.0
-
-export PATH="$PATH:." 
-export MPI_GROUP_MAX=64 
-mpiexec -np 1 ./conftest-linux-gnu-ia64-intel.py
-EOF
-
-#print instructions
-echo "== Now: cd src/ "
-echo "== qsub -q devel script.queue "
-echo "== Then run reconfigure script generated by PETSc and follow instructions"

../trunk-jpl/externalpackages/petsc/install-3.4-pleiades-mpich2-gcc470.sh

@@ +1 @@
+#!/bin/bash
+
+#Some cleanup
+rm -rf install petsc-3.4.2 src
+mkdir install src
+
+#Download from ISSM server
+$ISSM_DIR/scripts/DownloadExternalPackage.py 'http://issm.jpl.nasa.gov/files/externalpackages/petsc-lite-3.4.2.tar.gz' 'petsc-3.4.2.tar.gz'
+
+#Untar and move petsc to install directory
+tar -zxvf  petsc-3.4.2.tar.gz
+mv petsc-3.4.2/* src/
+rm -rf petsc-3.4.2
+
+#configure
+cd src
+./config/configure.py \
+ --prefix="$ISSM_DIR/externalpackages/petsc/install" \
+ --PETSC_ARCH="$ISSM_ARCH" \
+ --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
+ --with-batch=1  \
+ --with-debugging=0 \
+ --with-shared-libraries=1 \
+ --known-mpi-shared-libraries=1 \
+ --with-mpi=1 \
+ --with-mpi-lib="/nasa/mvapich2/1.6.sles11/gcc/lib/libmpich.a"\
+ --with-mpi-include="/nasa/mvapich2/1.6.sles11/gcc/include" \
+ --download-f-blas-lapack=yes \
+ --download-scalapack=yes \
+ --download-blacs=yes \
+ --download-mumps=yes \
+ --download-metis=yes \
+ --download-parmetis=yes \
+ --download-trilinos=yes \
+ --download-euclid=yes \
+ --download-hypre=yes \
+ --COPTFLAGS="-lmpich" \
+ --FOPTFLAGS="-lmpich" \
+ --CXXOPTFLAGS="-lmpich"
+
+#prepare script to reconfigure petsc
+cat > script.queue << EOF
+#PBS -S /bin/bash
+#PBS -l select=1:ncpus=1:model=wes 
+#PBS -l walltime=200 
+#PBS -W group_list=s1010
+#PBS -m e 
+
+. /usr/share/modules/init/bash 
+module load mpi-mvapich2/1.6/gcc
+module load gcc/4.7.0
+
+export PATH="$PATH:." 
+export MPI_GROUP_MAX=64 
+mpiexec -np 1 ./conftest-linux-gnu-ia64-intel.py
+EOF
+
+#print instructions
+echo "== Now: cd src/ "
+echo "== qsub -q devel script.queue "
+echo "== Then run reconfigure script generated by PETSc and follow instructions"