[15393] | 1 | Index: ../trunk-jpl/src/m/solve/solve.m
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| 2 | ===================================================================
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| 3 | --- ../trunk-jpl/src/m/solve/solve.m (revision 14351)
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| 4 | +++ ../trunk-jpl/src/m/solve/solve.m (revision 14352)
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| 5 | @@ -100,15 +100,22 @@
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| 6 | end
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| 7 |
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| 8 | %wait on lock
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| 9 | -if md.settings.waitonlock>0,
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| 10 | - %we wait for the done file
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| 11 | - islock=waitonlock(md);
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| 12 | - if islock==0, %no results to be loaded
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| 13 | - disp('The results must be loaded manually with md=loadresultsfromcluster(md).');
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| 14 | - else %load results
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| 15 | - disp('loading results from cluster');
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| 16 | +if isnan(md.settings.waitonlock),
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| 17 | + %load when user enters 'y'
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| 18 | + disp('solution launched on remote cluster. log in to detect job completion.');
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| 19 | + choice=input('Is the job successfully completed? (y/n)','s');
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| 20 | + if ~strcmp(choice,'y'),
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| 21 | + disp('Results not loaded... exiting');
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| 22 | + else
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| 23 | md=loadresultsfromcluster(md);
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| 24 | end
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| 25 | +elseif md.settings.waitonlock>0,
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| 26 | + %we wait for the done file
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| 27 | + done=waitonlock(md);
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| 28 | + disp('loading results from cluster');
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| 29 | + md=loadresultsfromcluster(md);
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| 30 | +elseif md.settings.waitonlock==0,
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| 31 | + disp('Model results must be loaded manually with md=loadresultsfromcluster(md);');
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| 32 | end
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| 33 |
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| 34 | %post processes qmu results if necessary
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| 35 | Index: ../trunk-jpl/src/m/solve/waitonlock.m
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| 36 | ===================================================================
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| 37 | --- ../trunk-jpl/src/m/solve/waitonlock.m (revision 14351)
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| 38 | +++ ../trunk-jpl/src/m/solve/waitonlock.m (revision 14352)
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| 39 | @@ -1,4 +1,4 @@
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| 40 | -function flag=waitonlock(md)
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| 41 | +function ispresent=waitonlock(md)
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| 42 | %WAITONLOCK - wait for a file
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| 43 | %
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| 44 | % This routine will return when a file named 'filename' is written to disk.
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| 45 | @@ -7,54 +7,56 @@
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| 46 | % Usage:
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| 47 | % flag=waitonlock(md)
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| 48 |
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| 49 | +%Return if waitonlock < 0 (no need to wait)
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| 50 | +
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| 51 | %Get filename (lock file) and options
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| 52 | -executionpath=md.cluster.executionpath;
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| 53 | -cluster=md.cluster.name;
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| 54 | -login=md.cluster.login;
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| 55 | -if isprop(md.cluster,'port')
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| 56 | - port=md.cluster.port;
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| 57 | +executionpath = md.cluster.executionpath;
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| 58 | +timelimit = md.settings.waitonlock;
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| 59 | +filename = [executionpath '/' md.private.runtimename '/' md.miscellaneous.name '.lock'];
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| 60 | +cluster = md.cluster;
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| 61 | +
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| 62 | +%If we are using the generic cluster in interactive mode, job is already complete
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| 63 | +if isa(cluster,'generic') & cluster.interactive
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| 64 | + %We are in interactive mode, no need to check for job completion
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| 65 | + ispresent=1;
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| 66 | + return;
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| 67 | end
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| 68 | -timelimit=md.settings.waitonlock;
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| 69 | -filename=[executionpath '/' md.private.runtimename '/' md.miscellaneous.name '.lock'];
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| 70 |
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| 71 | -%waitonlock will work if the lock is on the same machine only:
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| 72 | +%initialize time and file presence test flag
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| 73 | +time=0; ispresent=0;
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| 74 | +disp(['waiting for ' filename ' hold on... (Ctrl+C to exit)'])
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| 75 | +
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| 76 | +%prepare command if the job is not running on the local machine
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| 77 | if ~strcmpi(oshostname(),cluster),
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| 78 | -
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| 79 | - disp('solution launched on remote cluster. log in to detect job completion.');
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| 80 | - choice=input('Is the job successfully completed? (y/n)','s');
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| 81 | - if ~strcmp(choice,'y'),
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| 82 | - disp('Results not loaded... exiting');
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| 83 | - flag=0;
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| 84 | + login = cluster.login;
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| 85 | + port = 0;
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| 86 | + if isprop(cluster,'port')
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| 87 | + port = cluster.port;
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| 88 | + end
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| 89 | + if port,
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| 90 | + command = ['ssh -l ' login ' -p ' num2str(port) ' localhost " [ -f ' filename ' ]" 2>/dev/null'];
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| 91 | else
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| 92 | - flag=1;
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| 93 | + command = ['ssh -l ' login ' ' cluster.name ' " [ -f ' filename ' ]" 2>/dev/null'];
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| 94 | end
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| 95 | +end
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| 96 |
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| 97 | -%job is running on the same machine
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| 98 | -else
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| 99 | -
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| 100 | - if ismember('interactive',properties(md.cluster)) & md.cluster.interactive
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| 101 | - %We are in interactive mode, no need to check for job completion
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| 102 | - flag=1;
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| 103 | - return;
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| 104 | - end
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| 105 | - %initialize time and file presence test flag
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| 106 | - time=0; ispresent=0;
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| 107 | - disp(['waiting for ' filename ' hold on... (Ctrl+C to exit)'])
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| 108 | -
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| 109 | - %loop till file .lock exist or time is up
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| 110 | - while (ispresent==0 & time<timelimit)
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| 111 | +%loop till file .lock exist or time is up
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| 112 | +while (ispresent==0 & time<timelimit)
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| 113 | + if strcmpi(oshostname(),cluster),
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| 114 | ispresent=exist(filename,'file');
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| 115 | pause(1);
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| 116 | time=time+1/60;
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| 117 | - end
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| 118 | -
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| 119 | - %build output
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| 120 | - if (time>timelimit),
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| 121 | - disp('Time limit exceeded. Increase md.settings.waitonlock');
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| 122 | - disp('The results must be loaded manually with md=loadresultsfromcluster(md).');
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| 123 | - error(['waitonlock error message: time limit exceeded']);
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| 124 | - flag=0;
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| 125 | else
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| 126 | - flag=1;
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| 127 | + pause(10);
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| 128 | + fprintf('\rchecking for job completion (time = %3.2f min) ',time);
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| 129 | + ispresent=~system(command); if ispresent, fprintf('\n'); end
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| 130 | + time=time+10/60;
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| 131 | end
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| 132 | end
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| 133 | +
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| 134 | +%build output
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| 135 | +if (time>timelimit),
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| 136 | + disp('Time limit exceeded. Increase md.settings.waitonlock');
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| 137 | + disp('The results must be loaded manually with md=loadresultsfromcluster(md).');
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| 138 | + error(['waitonlock error message: time limit exceeded']);
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| 139 | +end
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