source: issm/oecreview/Archive/13393-13976/ISSM-13792-13793.diff

Index: ../trunk-jpl/externalpackages/petsc/install-dev-pleiades.sh
===================================================================
--- ../trunk-jpl/externalpackages/petsc/install-dev-pleiades.sh (revision 13792)
+++ ../trunk-jpl/externalpackages/petsc/install-dev-pleiades.sh (revision 13793)
@@ -1,8 +1,7 @@
 #!/bin/bash
-set -eu
 #Step 0: download
 #Step 1: install and write script
-STEP=0
+STEP=1
 
 if [ $STEP -eq 0 ]; then
        # Adapted from petsc 3.2. 
@@ -23,10 +22,13 @@
 # Note: using metis from externalpackages did not work...
 # for now downloading new metis
 #   -then rename metis in externalpackages to metis2
+#
+#              --download-prometheus=yes \
+#--download-superlu=http://crd.lbl.gov/~xiaoye/SuperLU/superlu_4.3.tar.gz \
+#              --download-plapack=yes \
+
 if [ $STEP -eq 1 ]; then
 
-       mkdir install
-
        #configure
        cd src
        ./config/configure.py \
@@ -35,13 +37,11 @@
                --PETSC_ARCH="$ISSM_ARCH" \
                --PETSC_DIR="$ISSM_DIR/externalpackages/petsc/src" \
                --with-debugging=0 \
-               --with-shared-libraries=0 \
+               --with-shared-libraries=1 \
                --with-blas-lapack-dir=/nasa/intel/mkl/10.0.011/ \
                --known-mpi-shared-libraries=1 \
-               --with-mpi-lib=/nasa/sgi/mpt/2.04/lib/libmpi.so \
-               --with-mpi-include=/nasa/sgi/mpt/2.04/include  \
+               --with-mpi=1 \
                --download-mumps=yes \
-               --download-plapack=yes \
                --download-scalapack=yes \
                --download-blacs=yes  \
                --download-blas=yes \
@@ -50,35 +50,29 @@
                --download-metis=yes \
                --download-trilinos=yes \
                --download-euclid=yes \
-               --download-pastix=yes \
-               --download-ptscotch=yes \
-               --download-spooles=yes \
                --download-spai=yes \
-               --download-superlu=yes \
+               --download-superlu=http://crd.lbl.gov/~xiaoye/SuperLU/superlu_4.3.tar.gz \
                --download-hypre=yes \
-               --download-prometheus=yes \
-               --FFLAGS=-I/usr/include \
-               --with-cxx=icpc \
-               --with-cc=icc \
-               --with-fc=ifort \
-               --COPTFLAGS=" -O3 -xS" \
-               --FOPTFLAGS=" -O3 -xS" \
-               --CXXOPTFLAGS=" -O3 -xS" \
-               --with-pic=1
+               --with-cxx=/nasa/sgi/mpt/2.06a67/bin/mpicxx \
+               --with-fc=/nasa/sgi/mpt/2.06a67/bin/mpif90 \
+               --COPTFLAGS="-lmpi -O3" \
+               --FOPTFLAGS="-lmpi -O3" \
+               --CXXOPTFLAGS="-lmpi -O3" 
                cat > script.queue << EOF
 #PBS -S /bin/bash
-#PBS -q debug 
-#PBS -l select=1:ncpus=1:model=har 
+#PBS -l select=1:ncpus=1:model=wes 
 #PBS -l walltime=200 
 #PBS -W group_list=s1010 
 #PBS -m e 
 . /usr/share/modules/init/bash 
-module load comp-intel/11.1.046 
-module load mpi-sgi/mpt.2.04  #DEFINES MPI_Type_create_indexed_block
+module load comp-intel/2012.0.032 
+module load mpi-sgi/mpt.2.06a67  
 module load math/intel_mkl_64_10.0.011 
 export PATH="$PATH:." 
 export MPI_GROUP_MAX=64 
 mpiexec -np 1 ./conftest-linux-gnu-ia64-intel.py
 EOF
-       echo "== Follow PETSc's instructions"
+       echo "== Now: cd src/ "
+       echo "== qsub -q devel script.queue "
+       echo "== Then run reconfigure script generated by PETSc and follow instructions"
 fi