source: issm/oecreview/Archive/12101-12120/log.tex

Last change on this file was 12325, checked in by Eric.Larour, 13 years ago

11990 to 12321 oec compliance
File size: 15.6 KB
RevLine 
[12325]1\noindent \textbf{Change \#1} with diff file ISSM-12101-12102.diff: \\ Function name: \\A /issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscMatrixToDoubleMatrix.cpp A /issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscVectorToDoubleVector.cpp M /issm/trunk-jpl/src/c/toolkits/petsc/patches/petscpatches.h \\ Export determination: 6. \\Rationale: Relocation from matlab to petsc patches
2M /issm/trunk-jpl/configs/config-macosx64-larour-nopetsc.sh M /issm/trunk-jpl/externalpackages/nose/install-macosx64sh M /issm/trunk-jpl/externalpackages/scipy/install-macosx64.sh M /issm/trunk-jpl/m4/issm\_options.m4 M /issm/trunk-jpl/src/Makefile.am M /issm/trunk-jpl/src/c/Container/Constraints.cpp M /issm/trunk-jpl/src/c/Container/Elements.cpp M /issm/trunk-jpl/src/c/Container/Loads.cpp M /issm/trunk-jpl/src/c/Container/Nodes.cpp M /issm/trunk-jpl/src/c/Container/Vertices.cpp M /issm/trunk-jpl/src/c/Makefile.am D /issm/trunk-jpl/src/c/matlab/io/PetscMatrixToDoubleMatrix.cpp D /issm/trunk-jpl/src/c/matlab/io/PetscVectorToDoubleVector.cpp M /issm/trunk-jpl/src/c/matlab/io/WriteMatlabData.cpp M /issm/trunk-jpl/src/c/matlab/io/matlabio.h M /issm/trunk-jpl/src/c/modules/ConstraintsStatex/RiftConstraintsState.cpp M /issm/trunk-jpl/src/c/modules/ConstraintsStatex/ThermalConstraintsState.cpp M /issm/trunk-jpl/src/c/modules/ConstraintsStatex/ThermalIsPresent.cpp M /issm/trunk-jpl/src/c/modules/DragCoefficientAbsGradientx/DragCoefficientAbsGradientx.cpp M /issm/trunk-jpl/src/c/modules/ElementResponsex/ElementResponsex.cpp M /issm/trunk-jpl/src/c/modules/GroundinglineMigrationx/GroundinglineMigrationx.cpp M /issm/trunk-jpl/src/c/modules/IceVolumex/IceVolumex.cpp M /issm/trunk-jpl/src/c/modules/InputConvergencex/InputConvergencex.cpp M /issm/trunk-jpl/src/c/modules/MassFluxx/MassFluxx.cpp M /issm/trunk-jpl/src/c/modules/MaxAbsVxx/MaxAbsVxx.cpp M /issm/trunk-jpl/src/c/modules/MaxAbsVyx/MaxAbsVyx.cpp M /issm/trunk-jpl/src/c/modules/MaxAbsVzx/MaxAbsVzx.cpp M /issm/trunk-jpl/src/c/modules/MaxVelx/MaxVelx.cpp M /issm/trunk-jpl/src/c/modules/MaxVxx/MaxVxx.cpp M /issm/trunk-jpl/src/c/modules/MaxVyx/MaxVyx.cpp M /issm/trunk-jpl/src/c/modules/MaxVzx/MaxVzx.cpp M /issm/trunk-jpl/src/c/modules/MeshPartitionx/MeshPartitionx.cpp M /issm/trunk-jpl/src/c/modules/MinVelx/MinVelx.cpp M /issm/trunk-jpl/src/c/modules/MinVxx/MinVxx.cpp M /issm/trunk-jpl/src/c/modules/MinVyx/MinVyx.cpp M /issm/trunk-jpl/src/c/modules/MinVzx/MinVzx.cpp M /issm/trunk-jpl/src/c/modules/NodalValuex/NodalValuex.cpp M /issm/trunk-jpl/src/c/modules/ParsePetscOptionsx/ParsePetscOptionsx.cpp M /issm/trunk-jpl/src/c/modules/RheologyBbarAbsGradientx/RheologyBbarAbsGradientx.cpp M /issm/trunk-jpl/src/c/modules/SurfaceAbsVelMisfitx/SurfaceAbsVelMisfitx.cpp M /issm/trunk-jpl/src/c/modules/SurfaceAreax/SurfaceAreax.cpp M /issm/trunk-jpl/src/c/modules/SurfaceAverageVelMisfitx/SurfaceAverageVelMisfitx.cpp M /issm/trunk-jpl/src/c/modules/SurfaceLogVelMisfitx/SurfaceLogVelMisfitx.cpp M /issm/trunk-jpl/src/c/modules/SurfaceLogVxVyMisfitx/SurfaceLogVxVyMisfitx.cpp M /issm/trunk-jpl/src/c/modules/SurfaceRelVelMisfitx/SurfaceRelVelMisfitx.cpp M /issm/trunk-jpl/src/c/modules/ThicknessAbsGradientx/ThicknessAbsGradientx.cpp M /issm/trunk-jpl/src/c/modules/ThicknessAbsMisfitx/ThicknessAbsMisfitx.cpp M /issm/trunk-jpl/src/c/modules/TimeAdaptx/TimeAdaptx.cpp M /issm/trunk-jpl/src/c/objects/Bamg/Metric.h M /issm/trunk-jpl/src/c/objects/IoModel.cpp M /issm/trunk-jpl/src/c/objects/Patch.cpp M /issm/trunk-jpl/src/c/solutions/issm.cpp M /issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscMatrixToDoubleMatrix.cpp M /issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscVectorToDoubleVector.cpp M /issm/trunk-jpl/src/c/toolkits/toolkits.h A /issm/trunk-jpl/src/m/model/mesh/triangle.py M /issm/trunk-jpl/startup.py M /issm/trunk-jpl/test/NightlyRun/test101.py Stripped out the following layers: METIS: if not running with MPI, do not partition! MPI: can now run without PETSC and MPI, just using the gsl matrix format. PETSC and MPI: idem. Can not run MPI and PETSC separately. \\\\
3\noindent \textbf{Change \#2} with diff file ISSM-12102-12103.diff: \\ Function name: \\M /issm/trunk-jpl/configs/config-macosx64-larour-nopetsc.sh M /issm/trunk-jpl/externalpackages/nose/install-macosx64sh M /issm/trunk-jpl/externalpackages/scipy/install-macosx64.sh M /issm/trunk-jpl/m4/issm\_options.m4 M /issm/trunk-jpl/src/Makefile.am M /issm/trunk-jpl/src/c/Container/Constraints.cpp M /issm/trunk-jpl/src/c/Container/Elements.cpp M /issm/trunk-jpl/src/c/Container/Loads.cpp M /issm/trunk-jpl/src/c/Container/Nodes.cpp M /issm/trunk-jpl/src/c/Container/Vertices.cpp M /issm/trunk-jpl/src/c/Makefile.am D /issm/trunk-jpl/src/c/matlab/io/PetscMatrixToDoubleMatrix.cpp D /issm/trunk-jpl/src/c/matlab/io/PetscVectorToDoubleVector.cpp M /issm/trunk-jpl/src/c/matlab/io/WriteMatlabData.cpp M /issm/trunk-jpl/src/c/matlab/io/matlabio.h M /issm/trunk-jpl/src/c/modules/ConstraintsStatex/RiftConstraintsState.cpp M /issm/trunk-jpl/src/c/modules/ConstraintsStatex/ThermalConstraintsState.cpp M /issm/trunk-jpl/src/c/modules/ConstraintsStatex/ThermalIsPresent.cpp M /issm/trunk-jpl/src/c/modules/DragCoefficientAbsGradientx/DragCoefficientAbsGradientx.cpp M /issm/trunk-jpl/src/c/modules/ElementResponsex/ElementResponsex.cpp M /issm/trunk-jpl/src/c/modules/GroundinglineMigrationx/GroundinglineMigrationx.cpp M /issm/trunk-jpl/src/c/modules/IceVolumex/IceVolumex.cpp M /issm/trunk-jpl/src/c/modules/InputConvergencex/InputConvergencex.cpp M /issm/trunk-jpl/src/c/modules/MassFluxx/MassFluxx.cpp M /issm/trunk-jpl/src/c/modules/MaxAbsVxx/MaxAbsVxx.cpp M /issm/trunk-jpl/src/c/modules/MaxAbsVyx/MaxAbsVyx.cpp M /issm/trunk-jpl/src/c/modules/MaxAbsVzx/MaxAbsVzx.cpp M /issm/trunk-jpl/src/c/modules/MaxVelx/MaxVelx.cpp M /issm/trunk-jpl/src/c/modules/MaxVxx/MaxVxx.cpp M /issm/trunk-jpl/src/c/modules/MaxVyx/MaxVyx.cpp M /issm/trunk-jpl/src/c/modules/MaxVzx/MaxVzx.cpp M /issm/trunk-jpl/src/c/modules/MeshPartitionx/MeshPartitionx.cpp M /issm/trunk-jpl/src/c/modules/MinVelx/MinVelx.cpp M /issm/trunk-jpl/src/c/modules/MinVxx/MinVxx.cpp M /issm/trunk-jpl/src/c/modules/MinVyx/MinVyx.cpp M /issm/trunk-jpl/src/c/modules/MinVzx/MinVzx.cpp M /issm/trunk-jpl/src/c/modules/NodalValuex/NodalValuex.cpp M /issm/trunk-jpl/src/c/modules/ParsePetscOptionsx/ParsePetscOptionsx.cpp M /issm/trunk-jpl/src/c/modules/RheologyBbarAbsGradientx/RheologyBbarAbsGradientx.cpp M /issm/trunk-jpl/src/c/modules/SurfaceAbsVelMisfitx/SurfaceAbsVelMisfitx.cpp M /issm/trunk-jpl/src/c/modules/SurfaceAreax/SurfaceAreax.cpp M /issm/trunk-jpl/src/c/modules/SurfaceAverageVelMisfitx/SurfaceAverageVelMisfitx.cpp M /issm/trunk-jpl/src/c/modules/SurfaceLogVelMisfitx/SurfaceLogVelMisfitx.cpp M /issm/trunk-jpl/src/c/modules/SurfaceLogVxVyMisfitx/SurfaceLogVxVyMisfitx.cpp M /issm/trunk-jpl/src/c/modules/SurfaceRelVelMisfitx/SurfaceRelVelMisfitx.cpp M /issm/trunk-jpl/src/c/modules/ThicknessAbsGradientx/ThicknessAbsGradientx.cpp M /issm/trunk-jpl/src/c/modules/ThicknessAbsMisfitx/ThicknessAbsMisfitx.cpp M /issm/trunk-jpl/src/c/modules/TimeAdaptx/TimeAdaptx.cpp M /issm/trunk-jpl/src/c/objects/Bamg/Metric.h M /issm/trunk-jpl/src/c/objects/IoModel.cpp M /issm/trunk-jpl/src/c/objects/Patch.cpp M /issm/trunk-jpl/src/c/solutions/issm.cpp M /issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscMatrixToDoubleMatrix.cpp M /issm/trunk-jpl/src/c/toolkits/petsc/patches/PetscVectorToDoubleVector.cpp M /issm/trunk-jpl/src/c/toolkits/toolkits.h A /issm/trunk-jpl/src/m/model/mesh/triangle.py M /issm/trunk-jpl/startup.py M /issm/trunk-jpl/test/NightlyRun/test101.py \\ Export determination: 6. \\Rationale: Stripped out the following layers: METIS: if not running with MPI, do not partition! MPI: can now run without PETSC and MPI, just using the gsl matrix format. PETSC and MPI: idem. Can not run MPI and PETSC separately.
4M /issm/trunk-jpl/configs/config-arm.sh Arm processor configuration \\\\
5\noindent \textbf{Change \#3} with diff file ISSM-12103-12104.diff: \\ Function name: \\M /issm/trunk-jpl/configs/config-arm.sh \\ Export determination: 6. \\Rationale: Arm processor configuration
6M /issm/trunk-jpl/src/c/objects/Numerics/Matrix.cpp Create dense matrix if sparsity=1 \\\\
7\noindent \textbf{Change \#4} with diff file ISSM-12104-12105.diff: \\ Function name: \\M /issm/trunk-jpl/src/c/objects/Numerics/Matrix.cpp \\ Export determination: 6. \\Rationale: Create dense matrix if sparsity=1
8M /issm/trunk-jpl/src/c/objects/Numerics/Matrix.cpp oops, wrong file \\\\
9\noindent \textbf{Change \#5} with diff file ISSM-12105-12106.diff: \\ Function name: \\M /issm/trunk-jpl/src/c/objects/Numerics/Matrix.cpp \\ Export determination: 6. \\Rationale: oops, wrong file
10M /issm/trunk-jpl/src/c/toolkits/petsc/patches/NewMat.cpp Create dense matrix if sparsity=1 \\\\
11\noindent \textbf{Change \#6} with diff file ISSM-12106-12107.diff: \\ Function name: \\M /issm/trunk-jpl/src/c/toolkits/petsc/patches/NewMat.cpp \\ Export determination: 6. \\Rationale: Create dense matrix if sparsity=1
12M /issm/trunk-jpl/externalpackages/petsc/install-dev-linux64.sh Added spai install \\\\
13\noindent \textbf{Change \#7} with diff file ISSM-12107-12108.diff: \\ Function name: \\M /issm/trunk-jpl/externalpackages/petsc/install-dev-linux64.sh \\ Export determination: 6. \\Rationale: Added spai install
14M /issm/trunk-jpl/src/c/Container/Nodes.cpp Bug in MPI\_Gather \\\\
15\noindent \textbf{Change \#8} with diff file ISSM-12108-12109.diff: \\ Function name: \\M /issm/trunk-jpl/src/c/Container/Nodes.cpp \\ Export determination: 6. \\Rationale: Bug in MPI\_Gather
16M /issm/trunk-jpl/src/c/Container/Nodes.cpp Fixed bug introduced while stripping MPI \\\\
17\noindent \textbf{Change \#9} with diff file ISSM-12109-12110.diff: \\ Function name: \\M /issm/trunk-jpl/src/c/Container/Nodes.cpp \\ Export determination: 6. \\Rationale: Fixed bug introduced while stripping MPI
18M /issm/trunk-jpl/test/NightlyRun/test101.py triangle now working completely in python \\\\
19\noindent \textbf{Change \#10} with diff file ISSM-12110-12111.diff: \\ Function name: \\M /issm/trunk-jpl/test/NightlyRun/test101.py \\ Export determination: 6. \\Rationale: triangle now working completely in python
20D /issm/trunk-jpl/test/NightlyRun/test101.py A /issm/trunk-jpl/test/NightlyRun/test102.py (from /issm/trunk-jpl/test/NightlyRun/test101.py:12110) Moving to 102 \\\\
21\noindent \textbf{Change \#11} with diff file ISSM-12111-12112.diff: \\ Function name: \\D /issm/trunk-jpl/test/NightlyRun/test101.py A /issm/trunk-jpl/test/NightlyRun/test102.py (from /issm/trunk-jpl/test/NightlyRun/test101.py:12110) \\ Export determination: 6. \\Rationale: Moving to 102
22M /issm/trunk-jpl/configs/config-macosx64-larour-nopetsc.sh M /issm/trunk-jpl/src/c/python/io/FetchPythonData.cpp M /issm/trunk-jpl/src/c/python/io/WritePythonData.cpp M /issm/trunk-jpl/src/c/python/io/pythonio.h M /issm/trunk-jpl/src/m/model/mesh M /issm/trunk-jpl/src/m/model/mesh/triangle.py A /issm/trunk-jpl/src/m/model/setmask.py A /issm/trunk-jpl/src/m/utils/Geometry/FlagElements.py M /issm/trunk-jpl/src/modules/ElementConnectivity/ElementConnectivity.cpp M /issm/trunk-jpl/src/modules/ElementConnectivity/ElementConnectivity.h M /issm/trunk-jpl/src/modules/NodeConnectivity/NodeConnectivity.cpp M /issm/trunk-jpl/src/modules/NodeConnectivity/NodeConnectivity.h M /issm/trunk-jpl/src/modules/TriMesh/TriMesh.cpp M /issm/trunk-jpl/src/modules/python/Makefile.am M /issm/trunk-jpl/startup.py M /issm/trunk-jpl/test/NightlyRun/test102.py Finished python version of setmask.py and FlagElements.py Also finished triangle.py, with addition of 2 python modules NodeConnectivity and ElementConnectivity. \\\\
23\noindent \textbf{Change \#12} with diff file ISSM-12112-12113.diff: \\ Function name: \\M /issm/trunk-jpl/configs/config-macosx64-larour-nopetsc.sh M /issm/trunk-jpl/src/c/python/io/FetchPythonData.cpp M /issm/trunk-jpl/src/c/python/io/WritePythonData.cpp M /issm/trunk-jpl/src/c/python/io/pythonio.h M /issm/trunk-jpl/src/m/model/mesh M /issm/trunk-jpl/src/m/model/mesh/triangle.py A /issm/trunk-jpl/src/m/model/setmask.py A /issm/trunk-jpl/src/m/utils/Geometry/FlagElements.py M /issm/trunk-jpl/src/modules/ElementConnectivity/ElementConnectivity.cpp M /issm/trunk-jpl/src/modules/ElementConnectivity/ElementConnectivity.h M /issm/trunk-jpl/src/modules/NodeConnectivity/NodeConnectivity.cpp M /issm/trunk-jpl/src/modules/NodeConnectivity/NodeConnectivity.h M /issm/trunk-jpl/src/modules/TriMesh/TriMesh.cpp M /issm/trunk-jpl/src/modules/python/Makefile.am M /issm/trunk-jpl/startup.py M /issm/trunk-jpl/test/NightlyRun/test102.py \\ Export determination: 6. \\Rationale: Finished python version of setmask.py and FlagElements.py Also finished triangle.py, with addition of 2 python modules NodeConnectivity and ElementConnectivity.
24M /issm/trunk-jpl/src/m/classes/model.py A /issm/trunk-jpl/src/m/model/addnote.py A /issm/trunk-jpl/src/m/model/parameterization/parameterize.py M /issm/trunk-jpl/test/NightlyRun/test102.py Implemented parameterize routine in python \\\\
25\noindent \textbf{Change \#13} with diff file ISSM-12113-12114.diff: \\ Function name: \\M /issm/trunk-jpl/src/m/classes/model.py A /issm/trunk-jpl/src/m/model/addnote.py A /issm/trunk-jpl/src/m/model/parameterization/parameterize.py M /issm/trunk-jpl/test/NightlyRun/test102.py \\ Export determination: 6. \\Rationale: Implemented parameterize routine in python \\\\
26\noindent \textbf{Change \#14} with diff file ISSM-12114-12115.diff: \\ Function name: \\A /issm/trunk-jpl/externalpackages/gsl/install-android-4.0.sh M /issm/trunk-jpl/externalpackages/triangle/configs/android/android-4.0/configure.make M /issm/trunk-jpl/m4/issm\_options.m4 \\ Export determination: 6. \\Rationale: Created the install script for GSL to cross-compile for arm-linux-android and made minor modifications to other scripts. \\\\
27\noindent \textbf{Change \#15} with diff file ISSM-12115-12116.diff: \\ Function name: \\A /issm/trunk-jpl/externalpackages/gsl/install-android-4.0.sh M /issm/trunk-jpl/externalpackages/triangle/configs/android/android-4.0/configure.make M /issm/trunk-jpl/m4/issm\_options.m4 \\ Export determination: 6. \\Rationale: Created the install script for GSL to cross-compile for arm-linux-android and made minor modifications to other scripts.
28M /issm/trunk-jpl/src/m/model/mesh/triangle.py Indexing bug \\\\
29\noindent \textbf{Change \#16} with diff file ISSM-12116-12117.diff: \\ Function name: \\M /issm/trunk-jpl/src/m/model/mesh/triangle.py \\ Export determination: 6. \\Rationale: Indexing bug
30M /issm/trunk-jpl/src/m/classes/materials.py Added defaults for materials class \\\\
31\noindent \textbf{Change \#17} with diff file ISSM-12117-12118.diff: \\ Function name: \\M /issm/trunk-jpl/src/m/classes/materials.py \\ Export determination: 6. \\Rationale: Added defaults for materials class
32M /issm/trunk-jpl/src/modules/InterpFromMeshToMesh2d/InterpFromMeshToMesh2d.cpp M /issm/trunk-jpl/src/modules/InterpFromMeshToMesh2d/InterpFromMeshToMesh2d.h M /issm/trunk-jpl/src/modules/python/Makefile.am Adapted InterpFromMeshToMesh2d to python \\\\
33\noindent \textbf{Change \#18} with diff file ISSM-12118-12119.diff: \\ Function name: \\M /issm/trunk-jpl/src/modules/InterpFromMeshToMesh2d/InterpFromMeshToMesh2d.cpp M /issm/trunk-jpl/src/modules/InterpFromMeshToMesh2d/InterpFromMeshToMesh2d.h M /issm/trunk-jpl/src/modules/python/Makefile.am \\ Export determination: 6. \\Rationale: Adapted InterpFromMeshToMesh2d to python
34M /issm/trunk-jpl/src/c/python/include/python\_macros.h Added nrhs as input argument for all python modules to access \\\\
35\noindent \textbf{Change \#19} with diff file ISSM-12119-12120.diff: \\ Function name: \\M /issm/trunk-jpl/src/c/python/include/python\_macros.h \\ Export determination: 6. \\Rationale: Added nrhs as input argument for all python modules to access
36M /issm/trunk-jpl/src/c/python/io/FetchPythonData.cpp M /issm/trunk-jpl/src/c/python/io/pythonio.h Added fetch data capability for double* vector \\\\
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