source: issm/oecreview/Archive/11666-11680/log.tex@ 11991

Last change on this file since 11991 was 11991, checked in by Eric.Larour, 13 years ago

oecreview from 11518 to present
File size: 16.5 KB
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1\noindent \textbf{Change \#1} with diff file ISSM-11666-11667.diff: \\ Function name: \\M /issm/trunk-jpl/configure.ac \\ Export determination: 6. \\Rationale: Took out ad/Makefile.am in configure.ac
2A /issm/trunk-jpl/cron/configs/linux64\_borstad\_daily A /issm/trunk-jpl/cron/configs/linux64\_borstad\_nightly A /issm/trunk-jpl/cron/configs/linux64\_borstad\_ucitrunk A /issm/trunk-jpl/cron/configs/linux64\_borstad\_validation A /issm/trunk-jpl/cron/configs/macosx64\_borstad A /issm/trunk-jpl/cron/configs/macosx64\_borstad\_daily borstad config files for nightly runs \\\\
3\noindent \textbf{Change \#2} with diff file ISSM-11667-11668.diff: \\ Function name: \\A /issm/trunk-jpl/cron/configs/linux64\_borstad\_daily A /issm/trunk-jpl/cron/configs/linux64\_borstad\_nightly A /issm/trunk-jpl/cron/configs/linux64\_borstad\_ucitrunk A /issm/trunk-jpl/cron/configs/linux64\_borstad\_validation A /issm/trunk-jpl/cron/configs/macosx64\_borstad A /issm/trunk-jpl/cron/configs/macosx64\_borstad\_daily \\ Export determination: 6. \\Rationale: borstad config files for nightly runs
4M /issm/trunk-jpl/externalpackages/windows/InstallInstructions.txt fix some typos \\\\
5\noindent \textbf{Change \#3} with diff file ISSM-11668-11669.diff: \\ Function name: \\M /issm/trunk-jpl/externalpackages/windows/InstallInstructions.txt \\ Export determination: 6. \\Rationale: fix some typos
6M /issm/trunk-jpl/m4/issm\_options.m4 Added adolc package \\\\
7\noindent \textbf{Change \#4} with diff file ISSM-11669-11670.diff: \\ Function name: \\M /issm/trunk-jpl/m4/issm\_options.m4 \\ Export determination: 6. \\Rationale: Added adolc package
8M /issm/trunk-jpl/src/c/Makefile.am M /issm/trunk-jpl/src/c/io/Matlab/FetchMatlabData.cpp M /issm/trunk-jpl/src/c/io/Matlab/WriteMatlabData.cpp M /issm/trunk-jpl/src/c/io/Matlab/matlabio.h A /issm/trunk-jpl/src/c/objects/Numerics/Matrix.cpp A /issm/trunk-jpl/src/c/objects/Numerics/Matrix.h A /issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp A /issm/trunk-jpl/src/c/objects/Numerics/Vector.h M /issm/trunk-jpl/src/c/objects/objects.h A /issm/trunk-jpl/src/c/toolkits/matlab/MatlabMatrixToMatrix.cpp A /issm/trunk-jpl/src/c/toolkits/matlab/MatlabVectorToVector.cpp M /issm/trunk-jpl/src/c/toolkits/matlab/matlabincludes.h Starting abstraction of Matrix and Vector objects, to step away from Petsc libraries. \\\\
9\noindent \textbf{Change \#5} with diff file ISSM-11670-11671.diff: \\ Function name: \\M /issm/trunk-jpl/src/c/Makefile.am M /issm/trunk-jpl/src/c/io/Matlab/FetchMatlabData.cpp M /issm/trunk-jpl/src/c/io/Matlab/WriteMatlabData.cpp M /issm/trunk-jpl/src/c/io/Matlab/matlabio.h A /issm/trunk-jpl/src/c/objects/Numerics/Matrix.cpp A /issm/trunk-jpl/src/c/objects/Numerics/Matrix.h A /issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp A /issm/trunk-jpl/src/c/objects/Numerics/Vector.h M /issm/trunk-jpl/src/c/objects/objects.h A /issm/trunk-jpl/src/c/toolkits/matlab/MatlabMatrixToMatrix.cpp A /issm/trunk-jpl/src/c/toolkits/matlab/MatlabVectorToVector.cpp M /issm/trunk-jpl/src/c/toolkits/matlab/matlabincludes.h \\ Export determination: 6. \\Rationale: Starting abstraction of Matrix and Vector objects, to step away from Petsc libraries.
10D /issm/trunk-jpl/externalpackages/android Not needed anymore \\\\
11\noindent \textbf{Change \#6} with diff file ISSM-11671-11672.diff: \\ Function name: \\D /issm/trunk-jpl/externalpackages/android \\ Export determination: 6. \\Rationale: Not needed anymore
12A /issm/trunk-jpl/src/android New android directory for development. Not connected \\\\
13\noindent \textbf{Change \#7} with diff file ISSM-11672-11673.diff: \\ Function name: \\A /issm/trunk-jpl/src/android \\ Export determination: 6. \\Rationale: New android directory for development. Not connected
14M /issm/trunk-jpl/etc/environment.sh M /issm/trunk-jpl/etc/environment\_variables.sh A /issm/trunk-jpl/externalpackages/android-emulators A /issm/trunk-jpl/externalpackages/android-ndk A /issm/trunk-jpl/externalpackages/android-ndk/android-ndk-r7b-darwin-x86.tar.bz2 A /issm/trunk-jpl/externalpackages/android-ndk/install.sh A /issm/trunk-jpl/externalpackages/android-sdk A /issm/trunk-jpl/externalpackages/android-sdk/android-sdk-r16-macosx.zip A /issm/trunk-jpl/externalpackages/android-sdk/apache-ant-1.8.2-bin.zip A /issm/trunk-jpl/externalpackages/android-sdk/install.sh Setting up the externalpackages for the android build. \\\\
15\noindent \textbf{Change \#8} with diff file ISSM-11673-11674.diff: \\ Function name: \\M /issm/trunk-jpl/etc/environment.sh M /issm/trunk-jpl/etc/environment\_variables.sh A /issm/trunk-jpl/externalpackages/android-emulators A /issm/trunk-jpl/externalpackages/android-ndk A /issm/trunk-jpl/externalpackages/android-ndk/android-ndk-r7b-darwin-x86.tar.bz2 A /issm/trunk-jpl/externalpackages/android-ndk/install.sh A /issm/trunk-jpl/externalpackages/android-sdk A /issm/trunk-jpl/externalpackages/android-sdk/android-sdk-r16-macosx.zip A /issm/trunk-jpl/externalpackages/android-sdk/apache-ant-1.8.2-bin.zip A /issm/trunk-jpl/externalpackages/android-sdk/install.sh \\ Export determination: 6. \\Rationale: Setting up the externalpackages for the android build.
16M /issm/trunk-jpl/src/m/classes/friction.m minor display of friction \\\\
17\noindent \textbf{Change \#9} with diff file ISSM-11674-11675.diff: \\ Function name: \\M /issm/trunk-jpl/src/m/classes/friction.m \\ Export determination: 6. \\Rationale: minor display of friction
18M /issm/trunk-jpl/src/c/io/Matlab/FetchMatlabData.cpp M /issm/trunk-jpl/src/c/toolkits/petsc/patches/MatlabMatrixToDoubleMatrix.cpp Added support for 'single' matlab format \\\\
19\noindent \textbf{Change \#10} with diff file ISSM-11675-11676.diff: \\ Function name: \\M /issm/trunk-jpl/src/c/io/Matlab/FetchMatlabData.cpp M /issm/trunk-jpl/src/c/toolkits/petsc/patches/MatlabMatrixToDoubleMatrix.cpp \\ Export determination: 6. \\Rationale: Added support for 'single' matlab format
20A /issm/trunk-jpl/examples/Jakobshavn A /issm/trunk-jpl/examples/Jakobshavn/Domain.exp A /issm/trunk-jpl/examples/Jakobshavn/Front.exp A /issm/trunk-jpl/examples/Jakobshavn/Jks.par A /issm/trunk-jpl/examples/Jakobshavn/WeakB.exp A /issm/trunk-jpl/examples/Jakobshavn/runme.m M /issm/trunk-jpl/examples/SquareIceShelf/runme.m Added Jks tutorial \\\\
21\noindent \textbf{Change \#11} with diff file ISSM-11676-11677.diff: \\ Function name: \\A /issm/trunk-jpl/examples/Jakobshavn A /issm/trunk-jpl/examples/Jakobshavn/Domain.exp A /issm/trunk-jpl/examples/Jakobshavn/Front.exp A /issm/trunk-jpl/examples/Jakobshavn/Jks.par A /issm/trunk-jpl/examples/Jakobshavn/WeakB.exp A /issm/trunk-jpl/examples/Jakobshavn/runme.m M /issm/trunk-jpl/examples/SquareIceShelf/runme.m \\ Export determination: 6. \\Rationale: Added Jks tutorial
22M /issm/trunk-jpl/examples/SquareIceShelf/runme.m reverted back to normal \\\\
23\noindent \textbf{Change \#12} with diff file ISSM-11677-11678.diff: \\ Function name: \\M /issm/trunk-jpl/examples/SquareIceShelf/runme.m \\ Export determination: 6. \\Rationale: reverted back to normal
24M /issm/trunk-jpl/examples/Jakobshavn/Jks.par simplified \\\\
25\noindent \textbf{Change \#13} with diff file ISSM-11678-11679.diff: \\ Function name: \\M /issm/trunk-jpl/examples/Jakobshavn/Jks.par \\ Export determination: 6. \\Rationale: simplified
26M /issm/trunk-jpl/src/c/Makefile.am M /issm/trunk-jpl/src/c/modules/CreateJacobianMatrixx/CreateJacobianMatrixx.cpp M /issm/trunk-jpl/src/c/modules/CreateJacobianMatrixx/CreateJacobianMatrixx.h M /issm/trunk-jpl/src/c/modules/CreateNodalConstraintsx/CreateNodalConstraintsx.cpp M /issm/trunk-jpl/src/c/modules/CreateNodalConstraintsx/CreateNodalConstraintsx.h M /issm/trunk-jpl/src/c/modules/GetSolutionFromInputsx/GetSolutionFromInputsx.cpp M /issm/trunk-jpl/src/c/modules/GetSolutionFromInputsx/GetSolutionFromInputsx.h M /issm/trunk-jpl/src/c/modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.cpp M /issm/trunk-jpl/src/c/modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.h M /issm/trunk-jpl/src/c/modules/Mergesolutionfromftogx/Mergesolutionfromftogx.cpp M /issm/trunk-jpl/src/c/modules/Mergesolutionfromftogx/Mergesolutionfromftogx.h M /issm/trunk-jpl/src/c/modules/Reduceloadx/Reduceloadx.cpp M /issm/trunk-jpl/src/c/modules/Reduceloadx/Reduceloadx.h M /issm/trunk-jpl/src/c/modules/Reducevectorgtofx/Reducevectorgtofx.cpp M /issm/trunk-jpl/src/c/modules/Reducevectorgtofx/Reducevectorgtofx.h M /issm/trunk-jpl/src/c/modules/Reducevectorgtosx/Reducevectorgtosx.cpp M /issm/trunk-jpl/src/c/modules/Reducevectorgtosx/Reducevectorgtosx.h M /issm/trunk-jpl/src/c/modules/Solverx/Solverx.cpp M /issm/trunk-jpl/src/c/modules/Solverx/Solverx.h A /issm/trunk-jpl/src/c/modules/Solverx/SolverxPetsc.cpp M /issm/trunk-jpl/src/c/modules/SystemMatricesx/SystemMatricesx.cpp M /issm/trunk-jpl/src/c/modules/SystemMatricesx/SystemMatricesx.h M /issm/trunk-jpl/src/c/modules/UpdateDynamicConstraintsx/UpdateDynamicConstraintsx.cpp M /issm/trunk-jpl/src/c/modules/UpdateDynamicConstraintsx/UpdateDynamicConstraintsx.h M /issm/trunk-jpl/src/c/modules/VecMergex/VecMergex.cpp M /issm/trunk-jpl/src/c/modules/VecMergex/VecMergex.h M /issm/trunk-jpl/src/c/objects/Elements/Element.h M /issm/trunk-jpl/src/c/objects/Elements/Penta.cpp M /issm/trunk-jpl/src/c/objects/Elements/Penta.h M /issm/trunk-jpl/src/c/objects/Elements/Tria.cpp M /issm/trunk-jpl/src/c/objects/Elements/Tria.h M /issm/trunk-jpl/src/c/objects/Loads/Icefront.cpp M /issm/trunk-jpl/src/c/objects/Loads/Icefront.h M /issm/trunk-jpl/src/c/objects/Loads/Load.h M /issm/trunk-jpl/src/c/objects/Loads/Numericalflux.cpp M /issm/trunk-jpl/src/c/objects/Loads/Numericalflux.h M /issm/trunk-jpl/src/c/objects/Loads/Pengrid.cpp M /issm/trunk-jpl/src/c/objects/Loads/Pengrid.h M /issm/trunk-jpl/src/c/objects/Loads/Penpair.cpp M /issm/trunk-jpl/src/c/objects/Loads/Penpair.h M /issm/trunk-jpl/src/c/objects/Loads/Riftfront.cpp M /issm/trunk-jpl/src/c/objects/Loads/Riftfront.h M /issm/trunk-jpl/src/c/objects/Node.cpp M /issm/trunk-jpl/src/c/objects/Node.h M /issm/trunk-jpl/src/c/objects/Numerics/ElementMatrix.cpp M /issm/trunk-jpl/src/c/objects/Numerics/ElementMatrix.h M /issm/trunk-jpl/src/c/objects/Numerics/ElementVector.cpp M /issm/trunk-jpl/src/c/objects/Numerics/ElementVector.h M /issm/trunk-jpl/src/c/objects/Numerics/Matrix.cpp M /issm/trunk-jpl/src/c/objects/Numerics/Matrix.h M /issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp M /issm/trunk-jpl/src/c/objects/Numerics/Vector.h M /issm/trunk-jpl/src/c/shared/Alloc/alloc.cpp M /issm/trunk-jpl/src/c/shared/Alloc/alloc.h M /issm/trunk-jpl/src/c/solutions/ResetBoundaryConditions.cpp M /issm/trunk-jpl/src/c/solutions/convergence.cpp M /issm/trunk-jpl/src/c/solutions/solutions.h M /issm/trunk-jpl/src/c/solvers/solver\_adjoint\_linear.cpp M /issm/trunk-jpl/src/c/solvers/solver\_linear.cpp M /issm/trunk-jpl/src/c/solvers/solver\_newton.cpp M /issm/trunk-jpl/src/c/solvers/solver\_nonlinear.cpp M /issm/trunk-jpl/src/c/solvers/solver\_stokescoupling\_nonlinear.cpp M /issm/trunk-jpl/src/c/solvers/solver\_thermal\_nonlinear.cpp M /issm/trunk-jpl/src/mex/CreateJacobianMatrix/CreateJacobianMatrix.cpp M /issm/trunk-jpl/src/mex/CreateNodalConstraints/CreateNodalConstraints.cpp M /issm/trunk-jpl/src/mex/GetSolutionFromInputs/GetSolutionFromInputs.cpp M /issm/trunk-jpl/src/mex/InputUpdateFromSolution/InputUpdateFromSolution.cpp M /issm/trunk-jpl/src/mex/Mergesolutionfromftog/Mergesolutionfromftog.cpp M /issm/trunk-jpl/src/mex/Reduceload/Reduceload.cpp M /issm/trunk-jpl/src/mex/Reducevectorgtof/Reducevectorgtof.cpp M /issm/trunk-jpl/src/mex/Reducevectorgtos/Reducevectorgtos.cpp M /issm/trunk-jpl/src/mex/Solver/Solver.cpp M /issm/trunk-jpl/src/mex/SystemMatrices/SystemMatrices.cpp M /issm/trunk-jpl/src/mex/UpdateDynamicConstraints/UpdateDynamicConstraints.cpp Large commit, to strip out Petsc from the code. Created new Matrix and Vector wrapper objects to the Petsc Mat and Vec objects. These wrappers make it possible to hook up a different package to handle matrix and vector operations. \\\\
27\noindent \textbf{Change \#14} with diff file ISSM-11679-11680.diff: \\ Function name: \\M /issm/trunk-jpl/src/c/Makefile.am M /issm/trunk-jpl/src/c/modules/CreateJacobianMatrixx/CreateJacobianMatrixx.cpp M /issm/trunk-jpl/src/c/modules/CreateJacobianMatrixx/CreateJacobianMatrixx.h M /issm/trunk-jpl/src/c/modules/CreateNodalConstraintsx/CreateNodalConstraintsx.cpp M /issm/trunk-jpl/src/c/modules/CreateNodalConstraintsx/CreateNodalConstraintsx.h M /issm/trunk-jpl/src/c/modules/GetSolutionFromInputsx/GetSolutionFromInputsx.cpp M /issm/trunk-jpl/src/c/modules/GetSolutionFromInputsx/GetSolutionFromInputsx.h M /issm/trunk-jpl/src/c/modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.cpp M /issm/trunk-jpl/src/c/modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.h M /issm/trunk-jpl/src/c/modules/Mergesolutionfromftogx/Mergesolutionfromftogx.cpp M /issm/trunk-jpl/src/c/modules/Mergesolutionfromftogx/Mergesolutionfromftogx.h M /issm/trunk-jpl/src/c/modules/Reduceloadx/Reduceloadx.cpp M /issm/trunk-jpl/src/c/modules/Reduceloadx/Reduceloadx.h M /issm/trunk-jpl/src/c/modules/Reducevectorgtofx/Reducevectorgtofx.cpp M /issm/trunk-jpl/src/c/modules/Reducevectorgtofx/Reducevectorgtofx.h M /issm/trunk-jpl/src/c/modules/Reducevectorgtosx/Reducevectorgtosx.cpp M /issm/trunk-jpl/src/c/modules/Reducevectorgtosx/Reducevectorgtosx.h M /issm/trunk-jpl/src/c/modules/Solverx/Solverx.cpp M /issm/trunk-jpl/src/c/modules/Solverx/Solverx.h A /issm/trunk-jpl/src/c/modules/Solverx/SolverxPetsc.cpp M /issm/trunk-jpl/src/c/modules/SystemMatricesx/SystemMatricesx.cpp M /issm/trunk-jpl/src/c/modules/SystemMatricesx/SystemMatricesx.h M /issm/trunk-jpl/src/c/modules/UpdateDynamicConstraintsx/UpdateDynamicConstraintsx.cpp M /issm/trunk-jpl/src/c/modules/UpdateDynamicConstraintsx/UpdateDynamicConstraintsx.h M /issm/trunk-jpl/src/c/modules/VecMergex/VecMergex.cpp M /issm/trunk-jpl/src/c/modules/VecMergex/VecMergex.h M /issm/trunk-jpl/src/c/objects/Elements/Element.h M /issm/trunk-jpl/src/c/objects/Elements/Penta.cpp M /issm/trunk-jpl/src/c/objects/Elements/Penta.h M /issm/trunk-jpl/src/c/objects/Elements/Tria.cpp M /issm/trunk-jpl/src/c/objects/Elements/Tria.h M /issm/trunk-jpl/src/c/objects/Loads/Icefront.cpp M /issm/trunk-jpl/src/c/objects/Loads/Icefront.h M /issm/trunk-jpl/src/c/objects/Loads/Load.h M /issm/trunk-jpl/src/c/objects/Loads/Numericalflux.cpp M /issm/trunk-jpl/src/c/objects/Loads/Numericalflux.h M /issm/trunk-jpl/src/c/objects/Loads/Pengrid.cpp M /issm/trunk-jpl/src/c/objects/Loads/Pengrid.h M /issm/trunk-jpl/src/c/objects/Loads/Penpair.cpp M /issm/trunk-jpl/src/c/objects/Loads/Penpair.h M /issm/trunk-jpl/src/c/objects/Loads/Riftfront.cpp M /issm/trunk-jpl/src/c/objects/Loads/Riftfront.h M /issm/trunk-jpl/src/c/objects/Node.cpp M /issm/trunk-jpl/src/c/objects/Node.h M /issm/trunk-jpl/src/c/objects/Numerics/ElementMatrix.cpp M /issm/trunk-jpl/src/c/objects/Numerics/ElementMatrix.h M /issm/trunk-jpl/src/c/objects/Numerics/ElementVector.cpp M /issm/trunk-jpl/src/c/objects/Numerics/ElementVector.h M /issm/trunk-jpl/src/c/objects/Numerics/Matrix.cpp M /issm/trunk-jpl/src/c/objects/Numerics/Matrix.h M /issm/trunk-jpl/src/c/objects/Numerics/Vector.cpp M /issm/trunk-jpl/src/c/objects/Numerics/Vector.h M /issm/trunk-jpl/src/c/shared/Alloc/alloc.cpp M /issm/trunk-jpl/src/c/shared/Alloc/alloc.h M /issm/trunk-jpl/src/c/solutions/ResetBoundaryConditions.cpp M /issm/trunk-jpl/src/c/solutions/convergence.cpp M /issm/trunk-jpl/src/c/solutions/solutions.h M /issm/trunk-jpl/src/c/solvers/solver\_adjoint\_linear.cpp M /issm/trunk-jpl/src/c/solvers/solver\_linear.cpp M /issm/trunk-jpl/src/c/solvers/solver\_newton.cpp M /issm/trunk-jpl/src/c/solvers/solver\_nonlinear.cpp M /issm/trunk-jpl/src/c/solvers/solver\_stokescoupling\_nonlinear.cpp M /issm/trunk-jpl/src/c/solvers/solver\_thermal\_nonlinear.cpp M /issm/trunk-jpl/src/mex/CreateJacobianMatrix/CreateJacobianMatrix.cpp M /issm/trunk-jpl/src/mex/CreateNodalConstraints/CreateNodalConstraints.cpp M /issm/trunk-jpl/src/mex/GetSolutionFromInputs/GetSolutionFromInputs.cpp M /issm/trunk-jpl/src/mex/InputUpdateFromSolution/InputUpdateFromSolution.cpp M /issm/trunk-jpl/src/mex/Mergesolutionfromftog/Mergesolutionfromftog.cpp M /issm/trunk-jpl/src/mex/Reduceload/Reduceload.cpp M /issm/trunk-jpl/src/mex/Reducevectorgtof/Reducevectorgtof.cpp M /issm/trunk-jpl/src/mex/Reducevectorgtos/Reducevectorgtos.cpp M /issm/trunk-jpl/src/mex/Solver/Solver.cpp M /issm/trunk-jpl/src/mex/SystemMatrices/SystemMatrices.cpp M /issm/trunk-jpl/src/mex/UpdateDynamicConstraints/UpdateDynamicConstraints.cpp \\ Export determination: 6. \\Rationale: Large commit, to strip out Petsc from the code. Created new Matrix and Vector wrapper objects to the Petsc Mat and Vec objects. These wrappers make it possible to hook up a different package to handle matrix and vector operations.
28M /issm/trunk-jpl/m4/issm\_options.m4 Simplifying dakota glitch \\\\
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