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source:
issm/oecreview/Archive/11648-11666/ISSM-11664-11665.diff@
11991
| Last change on this file since 11991 was 11991, checked in by , 13 years ago | |
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| File size: 43.4 KB | |
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proj/ice/larour/issm-uci-clean/trunk-jpl/src/c/Makefile.am
929 929 issm_SOURCES = solutions/issm.cpp 930 930 issm_CXXFLAGS= -fPIC -D_PARALLEL_ $(CXXFLAGS) $(CXXOPTFLAGS) $(COPTFLAGS) 931 931 #}}} 932 #Automatic differentiation: append this fold to the end of the src/c/Makefile.am to get this Makefile.am {{{ 933 if ADIC2 934 lib_LIBRARIES += libAD.a libpISSMRose.a 935 936 #ADIC2 library, for automatic differentiation 937 #libAD_a_SOURCES = ./mini1.ad.c 938 libAD_a_SOURCES = 939 libAD_a_CFLAGS = -fPIC -D_PARALLEL_ -D_C_ $(COPTFLAGS) 940 941 942 943 #test rose preprocessing 944 %.r2cpp.cpp : %.cpp 945 testTranslator -rose:o $@ -rose:skipfinalCompileStep -DHAVE_CONFIG_H -D_PARALLEL_ -D_C_ -I. -I../.. $(INCLUDES) $< 946 libpISSMRose_a_SOURCES = $(libpISSM_a_SOURCES:.cpp=.r2cpp.cpp) 947 libpISSMRose_a_CXXFLAGS= -fPIC -D_PARALLEL_ -D_C_ $(CXXOPTFLAGS) 948 949 950 951 #Automatic differentiation rules: 952 %.ad.c: %.c 953 adic2 -mforward $< --nary 954 955 956 957 #Executable 958 bin_PROGRAMS += issmRose.exe 959 issmRose_exe_LDADD = ./libpISSMRose.a $(LDADD) 960 issmRose_exe_SOURCES = solutions/issm.cpp 961 issmRose_exe_CXXFLAGS= -fPIC -D_PARALLEL_ $(CXXOPTFLAGS) $(COPTFLAGS) 962 LDADD += $(ADIC2LIB) 963 964 endif #}}} -
proj/ice/larour/issm-uci-clean/trunk-jpl/src/ad/softlink.sh
1 #/bin/bash2 #This script soflinks all files in trunk/src/c/ directory necessary for compilation3 #of trunk/src/ad/4 ln -s ../c/include5 ln -s ../c/objects6 ln -s ../c/Container7 ln -s ../c/shared8 ln -s ../c/toolkits9 ln -s ../c/io10 ln -s ../c/EnumDefinitions11 ln -s ../c/modules12 ln -s ../c/solutions13 ln -s ../c/solvers14 ln -s ../c/issm.h -
proj/ice/larour/issm-uci-clean/trunk-jpl/src/ad/Makefile.am
1 INCLUDES = @DAKOTAINCL@ @SHAPELIBINCL@ @PETSCINCL@ @SLEPCINCL@ @MPIINCL@ @MATLABINCL@ @METISINCL@ @CHACOINCL@ @SCOTCHINCL@ @PLAPACKINCL@ @BLASLAPACKINCL@ @MKLINCL@ @MUMPSINCL@ @TRIANGLEINCL@ @HYPREINCL@ @MLINCL@ @TAOINCL@2 EXEEXT=$(ISSMEXT)3 4 #Library declaration {{{15 #Compile serial library, and then try and compile parallel library6 if NOSERIAL7 if NOPARALLEL8 lib_LIBRARIES =9 else10 lib_LIBRARIES = libpISSM.a libOverload.a11 endif12 else13 if NOPARALLEL14 lib_LIBRARIES = libISSM.a libOverload.a15 else16 lib_LIBRARIES = libISSM.a libpISSM.a libOverload.a17 endif18 endif19 #}}}20 21 #sources22 #Core sources{{{123 core_sources = ./include/macros.h\24 ./include/typedefs.h\25 ./include/types.h\26 ./include/include.h\27 ./objects/objects.h\28 ./objects/Object.h\29 ./objects/Gauss/GaussTria.h\30 ./objects/Gauss/GaussTria.cpp\31 ./objects/Update.h\32 ./objects/Element.h\33 ./objects/FemModel.h\34 ./objects/FemModel.cpp\35 ./objects/Material.h\36 ./objects/Load.h\37 ./objects/Contour.h\38 ./objects/Contour.cpp\39 ./objects/OptArgs.h\40 ./objects/OptPars.h\41 ./objects/Loads/Friction.h\42 ./objects/Loads/Friction.cpp\43 ./objects/Inputs/TransientInput.h\44 ./objects/Inputs/TransientInput.cpp\45 ./objects/Constraints/SpcTransient.cpp\46 ./objects/Constraints/SpcTransient.h\47 ./objects/DofIndexing.h\48 ./objects/DofIndexing.cpp\49 ./objects/IoModel.h\50 ./objects/IoModel.cpp\51 ./objects/Node.h\52 ./objects/Node.cpp\53 ./objects/Segment.h\54 ./objects/Segment.cpp\55 ./objects/Vertex.h\56 ./objects/Vertex.cpp\57 ./objects/Hook.h\58 ./objects/Hook.cpp\59 ./objects/Patch.h\60 ./objects/Patch.cpp\61 ./objects/ElementResults/ElementResultLocal.h\62 ./objects/ElementResults/DoubleElementResult.h\63 ./objects/ElementResults/DoubleElementResult.cpp\64 ./objects/ElementResults/TriaP1ElementResult.h\65 ./objects/ElementResults/TriaP1ElementResult.cpp\66 ./objects/ElementResults/BoolElementResult.h\67 ./objects/ElementResults/BoolElementResult.cpp\68 ./objects/ExternalResults/ExternalResult.h\69 ./objects/ExternalResults/BoolExternalResult.h\70 ./objects/ExternalResults/BoolExternalResult.cpp\71 ./objects/ExternalResults/DoubleExternalResult.h\72 ./objects/ExternalResults/DoubleExternalResult.cpp\73 ./objects/ExternalResults/DoubleVecExternalResult.h\74 ./objects/ExternalResults/DoubleVecExternalResult.cpp\75 ./objects/ExternalResults/DoubleMatExternalResult.h\76 ./objects/ExternalResults/DoubleMatExternalResult.cpp\77 ./objects/ExternalResults/IntExternalResult.h\78 ./objects/ExternalResults/IntExternalResult.cpp\79 ./objects/ExternalResults/StringExternalResult.h\80 ./objects/ExternalResults/StringExternalResult.cpp\81 ./objects/ExternalResults/PetscVecExternalResult.h\82 ./objects/ExternalResults/PetscVecExternalResult.cpp\83 ./objects/Elements/Tria.h\84 ./objects/Elements/Tria.cpp\85 ./objects/Elements/TriaHook.h\86 ./objects/Elements/TriaHook.cpp\87 ./objects/Elements/TriaRef.h\88 ./objects/Elements/TriaRef.cpp\89 ./objects/Inputs/Input.h\90 ./objects/Inputs/InputLocal.h\91 ./objects/Inputs/TriaP1Input.h\92 ./objects/Inputs/TriaP1Input.cpp\93 ./objects/Inputs/BoolInput.h\94 ./objects/Inputs/BoolInput.cpp\95 ./objects/Inputs/IntInput.h\96 ./objects/Inputs/IntInput.cpp\97 ./objects/Inputs/DoubleInput.h\98 ./objects/Inputs/DoubleInput.cpp\99 ./objects/Inputs/DatasetInput.h\100 ./objects/Inputs/DatasetInput.cpp\101 ./objects/Materials/Matice.h\102 ./objects/Materials/Matice.cpp\103 ./objects/Materials/Matpar.h\104 ./objects/Materials/Matpar.cpp\105 ./objects/Constraints/Constraint.h\106 ./objects/Constraints/SpcStatic.cpp\107 ./objects/Constraints/SpcStatic.h\108 ./objects/Constraints/SpcDynamic.cpp\109 ./objects/Constraints/SpcDynamic.h\110 ./objects/Loads/Penpair.cpp\111 ./objects/Loads/Penpair.h\112 ./objects/Loads/Pengrid.cpp\113 ./objects/Loads/Pengrid.h\114 ./objects/Loads/Icefront.cpp\115 ./objects/Loads/Icefront.h\116 ./objects/Loads/Numericalflux.cpp\117 ./objects/Loads/Numericalflux.h\118 ./objects/Numerics/ElementMatrix.h\119 ./objects/Numerics/ElementMatrix.cpp\120 ./objects/Numerics/ElementVector.h\121 ./objects/Numerics/ElementVector.cpp\122 ./objects/Params/Param.h\123 ./objects/Params/BoolParam.cpp\124 ./objects/Params/BoolParam.h\125 ./objects/Params/IntParam.cpp\126 ./objects/Params/IntParam.h\127 ./objects/Params/IntVecParam.cpp\128 ./objects/Params/IntVecParam.h\129 ./objects/Params/IntMatParam.cpp\130 ./objects/Params/IntMatParam.h\131 ./objects/Params/DoubleParam.cpp\132 ./objects/Params/DoubleParam.h\133 ./objects/Params/FileParam.cpp\134 ./objects/Params/FileParam.h\135 ./objects/Params/PetscMatParam.cpp\136 ./objects/Params/PetscMatParam.h\137 ./objects/Params/StringArrayParam.cpp\138 ./objects/Params/StringArrayParam.h\139 ./objects/Params/DoubleMatParam.cpp\140 ./objects/Params/DoubleMatParam.h\141 ./objects/Params/DoubleTransientMatParam.cpp\142 ./objects/Params/DoubleTransientMatParam.h\143 ./objects/Params/DoubleMatArrayParam.cpp\144 ./objects/Params/DoubleMatArrayParam.h\145 ./objects/Params/DoubleVecParam.cpp\146 ./objects/Params/DoubleVecParam.h\147 ./objects/Params/PetscVecParam.cpp\148 ./objects/Params/PetscVecParam.h\149 ./objects/Params/StringParam.cpp\150 ./objects/Params/StringParam.h\151 ./Container/Container.h\152 ./Container/Constraints.h\153 ./Container/Constraints.cpp\154 ./Container/DataSet.h\155 ./Container/DataSet.cpp\156 ./Container/Elements.h\157 ./Container/Elements.cpp\158 ./Container/Inputs.h\159 ./Container/Inputs.cpp\160 ./Container/Loads.h\161 ./Container/Loads.cpp\162 ./Container/Materials.h\163 ./Container/Materials.cpp\164 ./Container/Nodes.h\165 ./Container/Nodes.cpp\166 ./Container/Options.h\167 ./Container/Options.cpp\168 ./Container/Parameters.h\169 ./Container/Parameters.cpp\170 ./Container/Results.h\171 ./Container/Results.cpp\172 ./Container/Vertices.h\173 ./Container/Vertices.cpp\174 ./shared/shared.h\175 ./shared/Alloc/alloc.h\176 ./shared/Alloc/alloc.cpp\177 ./shared/Matrix/matrix.h\178 ./shared/Matrix/MatrixUtils.cpp\179 ./shared/Dofs/dofs.h\180 ./shared/Dofs/dofsetgen.cpp\181 ./shared/Numerics/numerics.h\182 ./shared/Numerics/Verbosity.h\183 ./shared/Numerics/Verbosity.cpp\184 ./shared/Numerics/IsInputConverged.cpp\185 ./shared/Numerics/GaussPoints.h\186 ./shared/Numerics/GaussPoints.cpp\187 ./shared/Numerics/cross.cpp\188 ./shared/Numerics/isnan.h\189 ./shared/Numerics/isnan.cpp\190 ./shared/Numerics/extrema.cpp\191 ./shared/Numerics/XZvectorsToCoordinateSystem.cpp\192 ./shared/Numerics/UnitConversion.cpp\193 ./shared/Numerics/PetscOptionsFromAnalysis.cpp\194 ./shared/Exceptions/exceptions.h\195 ./shared/Exceptions/Exceptions.cpp\196 ./shared/Exceptions/exprintf.cpp\197 ./shared/Sorting/binary_search.cpp\198 ./shared/Sorting/sorting.h\199 ./shared/Elements/elements.h\200 ./shared/Elements/Paterson.cpp\201 ./shared/Elements/Arrhenius.cpp\202 ./shared/Elements/GetVerticesCoordinates.cpp\203 ./shared/Elements/GetLocalDofList.cpp\204 ./shared/Elements/GetGlobalDofList.cpp\205 ./shared/Elements/GetNumberOfDofs.cpp\206 ./shared/String/sharedstring.h\207 ./toolkits/petsc\208 ./toolkits/petsc/patches\209 ./toolkits/petsc/patches/SolverEnum.h\210 ./toolkits/petsc/patches/petscpatches.h\211 ./toolkits/petsc/patches/MatlabMatrixToPetscMatrix.cpp\212 ./toolkits/petsc/patches/MatlabVectorToPetscVector.cpp\213 ./toolkits/petsc/patches/PetscMatrixToMatlabMatrix.cpp\214 ./toolkits/petsc/patches/PetscVectorToMatlabVector.cpp\215 ./toolkits/petsc/patches/MatlabMatrixToDoubleMatrix.cpp\216 ./toolkits/petsc/patches/MatlabVectorToDoubleVector.cpp\217 ./toolkits/petsc/patches/PetscDetermineLocalSize.cpp\218 ./toolkits/petsc/patches/VecTranspose.cpp\219 ./toolkits/petsc/patches/VecToMPISerial.cpp\220 ./toolkits/petsc/patches/MatToSerial.cpp\221 ./toolkits/petsc/patches/VecMerge.cpp\222 ./toolkits/petsc/patches/NewVec.cpp\223 ./toolkits/petsc/patches/PetscOptionsDetermineSolverType.cpp\224 ./toolkits/petsc/patches/PetscOptionsInsertMultipleString.cpp\225 ./toolkits/petsc/patches/NewMat.cpp\226 ./toolkits/petsc/patches/SerialToVec.cpp\227 ./toolkits/petsc/patches/VecFree.cpp\228 ./toolkits/petsc/patches/VecDuplicatePatch.cpp\229 ./toolkits/petsc/patches/KSPFree.cpp\230 ./toolkits/petsc/patches/ISFree.cpp\231 ./toolkits/petsc/patches/MatFree.cpp\232 ./toolkits/petsc/patches/GetOwnershipBoundariesFromRange.cpp\233 ./toolkits/petsc/patches/VecPartition.cpp\234 ./toolkits/petsc/patches/MatPartition.cpp\235 ./toolkits/petsc/patches/MatInvert.cpp\236 ./toolkits/petsc/patches/MatMultPatch.cpp\237 ./toolkits/petsc/petscincludes.h\238 ./toolkits/mpi/mpiincludes.h\239 ./toolkits/mpi/patches/mpipatches.h\240 ./toolkits/mpi/patches/MPI_Upperrow.cpp\241 ./toolkits/mpi/patches/MPI_Lowerrow.cpp\242 ./toolkits/mpi/patches/MPI_Boundariesfromrange.cpp\243 ./toolkits/metis/metisincludes.h\244 ./toolkits/metis/patches/metispatches.h\245 ./toolkits/metis/patches/METIS_PartMeshNodalPatch.cpp\246 ./toolkits/triangle/triangleincludes.h\247 ./toolkits.h\248 ./io/io.h\249 ./io/Disk/diskio.h\250 ./io/Disk/pfopen.cpp\251 ./io/Disk/pfclose.cpp\252 ./io/PrintfFunction.cpp\253 ./EnumDefinitions/EnumDefinitions.h\254 ./modules/ModelProcessorx/ModelProcessorx.h\255 ./modules/ModelProcessorx/ModelProcessorx.cpp\256 ./modules/ModelProcessorx/DistributeNumDofs.cpp\257 ./modules/ModelProcessorx/ElementsAndVerticesPartitioning.cpp\258 ./modules/ModelProcessorx/NodesPartitioning.cpp\259 ./modules/ModelProcessorx/SortDataSets.cpp\260 ./modules/ModelProcessorx/UpdateCounters.cpp\261 ./modules/ModelProcessorx/CreateDataSets.cpp\262 ./modules/ModelProcessorx/CreateParameters.cpp\263 ./modules/ModelProcessorx/CreateSingleNodeToElementConnectivity.cpp\264 ./modules/ModelProcessorx/CreateNumberNodeToElementConnectivity.cpp\265 ./modules/ModelProcessorx/CreateElementsVerticesAndMaterials.cpp\266 ./modules/ParsePetscOptionsx/ParsePetscOptionsx.h\267 ./modules/ParsePetscOptionsx/ParsePetscOptionsx.cpp\268 ./modules/NodesDofx/NodesDofx.h\269 ./modules/NodesDofx/NodesDofx.cpp\270 ./modules/NodalValuex/NodalValuex.h\271 ./modules/NodalValuex/NodalValuex.cpp\272 ./modules/VerticesDofx/VerticesDofx.h\273 ./modules/VerticesDofx/VerticesDofx.cpp\274 ./modules/OutputResultsx/OutputResultsx.h\275 ./modules/OutputResultsx/OutputResultsx.cpp\276 ./modules/InputDuplicatex/InputDuplicatex.h\277 ./modules/InputDuplicatex/InputDuplicatex.cpp\278 ./modules/InputScalex/InputScalex.h\279 ./modules/InputScalex/InputScalex.cpp\280 ./modules/SurfaceAreax/SurfaceAreax.h\281 ./modules/SurfaceAreax/SurfaceAreax.cpp\282 ./modules/CreateNodalConstraintsx/CreateNodalConstraintsx.h\283 ./modules/CreateNodalConstraintsx/CreateNodalConstraintsx.cpp\284 ./modules/UpdateDynamicConstraintsx/UpdateDynamicConstraintsx.h\285 ./modules/UpdateDynamicConstraintsx/UpdateDynamicConstraintsx.cpp\286 ./modules/IoModelToConstraintsx/IoModelToConstraintsx.h\287 ./modules/IoModelToConstraintsx/IoModelToConstraintsx.cpp\288 ./modules/InputUpdateFromConstantx/InputUpdateFromConstantx.h\289 ./modules/InputUpdateFromConstantx/InputUpdateFromConstantx.cpp\290 ./modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.h\291 ./modules/InputUpdateFromSolutionx/InputUpdateFromSolutionx.cpp\292 ./modules/GetSolutionFromInputsx/GetSolutionFromInputsx.h\293 ./modules/GetSolutionFromInputsx/GetSolutionFromInputsx.cpp\294 ./modules/GetVectorFromInputsx/GetVectorFromInputsx.h\295 ./modules/GetVectorFromInputsx/GetVectorFromInputsx.cpp\296 ./modules/InputUpdateFromVectorx/InputUpdateFromVectorx.h\297 ./modules/InputUpdateFromVectorx/InputUpdateFromVectorx.cpp\298 ./modules/InputArtificialNoisex/InputArtificialNoisex.h\299 ./modules/InputArtificialNoisex/InputArtificialNoisex.cpp\300 ./modules/TimeAdaptx/TimeAdaptx.h\301 ./modules/TimeAdaptx/TimeAdaptx.cpp\302 ./modules/UpdateVertexPositionsx/UpdateVertexPositionsx.h\303 ./modules/UpdateVertexPositionsx/UpdateVertexPositionsx.cpp\304 ./modules/ConfigureObjectsx/ConfigureObjectsx.h\305 ./modules/ConfigureObjectsx/ConfigureObjectsx.cpp\306 ./modules/ComputeBasalStressx/ComputeBasalStressx.h\307 ./modules/ComputeBasalStressx/ComputeBasalStressx.cpp\308 ./modules/ComputeStrainRatex/ComputeStrainRatex.h\309 ./modules/ComputeStrainRatex/ComputeStrainRatex.cpp\310 ./modules/SpcNodesx/SpcNodesx.h\311 ./modules/SpcNodesx/SpcNodesx.cpp\312 ./modules/PositiveDegreeDayx/PositiveDegreeDayx.h\313 ./modules/PositiveDegreeDayx/PositiveDegreeDayx.cpp\314 ./modules/UpdateConstraintsx/UpdateConstraintsx.h\315 ./modules/UpdateConstraintsx/UpdateConstraintsx.cpp\316 ./modules/MeshPartitionx/MeshPartitionx.cpp\317 ./modules/MeshPartitionx/MeshPartitionx.h\318 ./modules/Reducevectorgtofx/Reducevectorgtofx.cpp\319 ./modules/Reducevectorgtofx/Reducevectorgtofx.h\320 ./modules/Reduceloadx/Reduceloadx.h\321 ./modules/Reduceloadx/Reduceloadx.cpp\322 ./modules/EnumToStringx/EnumToStringx.cpp\323 ./modules/EnumToStringx/EnumToStringx.h\324 ./modules/StringToEnumx/StringToEnumx.cpp\325 ./modules/StringToEnumx/StringToEnumx.h\326 ./modules/SystemMatricesx/SystemMatricesx.cpp\327 ./modules/SystemMatricesx/SystemMatricesx.h\328 ./modules/CreateJacobianMatrixx/CreateJacobianMatrixx.cpp\329 ./modules/CreateJacobianMatrixx/CreateJacobianMatrixx.h\330 ./modules/ConstraintsStatex/ConstraintsStatex.cpp\331 ./modules/ConstraintsStatex/ConstraintsStatex.h\332 ./modules/ConstraintsStatex/ConstraintsStateLocal.h\333 ./modules/Responsex/Responsex.h\334 ./modules/Responsex/Responsex.cpp\335 ./modules/RequestedOutputsx/RequestedOutputsx.h\336 ./modules/RequestedOutputsx/RequestedOutputsx.cpp\337 ./modules/ResetConstraintsx/ResetConstraintsx.h\338 ./modules/ResetConstraintsx/ResetConstraintsx.cpp\339 ./modules/ResetCoordinateSystemx/ResetCoordinateSystemx.h\340 ./modules/ResetCoordinateSystemx/ResetCoordinateSystemx.cpp\341 ./modules/Solverx/Solverx.cpp\342 ./modules/Solverx/Solverx.h\343 ./modules/Solverx/DofTypesToIndexSet.cpp\344 ./modules/VecMergex/VecMergex.cpp\345 ./modules/VecMergex/VecMergex.h\346 ./modules/Mergesolutionfromftogx/Mergesolutionfromftogx.cpp\347 ./modules/Mergesolutionfromftogx/Mergesolutionfromftogx.h\348 ./modules/InputToResultx/InputToResultx.cpp\349 ./modules/InputToResultx/InputToResultx.h\350 ./modules/InputConvergencex/InputConvergencex.cpp\351 ./modules/InputConvergencex/InputConvergencex.h\352 ./solutions/convergence.cpp\353 ./solutions/ProcessArguments.cpp\354 ./solutions/WriteLockFile.cpp\355 ./solutions/ResetBoundaryConditions.cpp\356 ./solutions/AnalysisConfiguration.cpp\357 ./solutions/CorePointerFromSolutionEnum.cpp\358 ./solvers/solver_linear.cpp\359 ./solvers/solver_nonlinear.cpp\360 ./solvers/solver_newton.cpp361 #}}}362 #DAKOTA sources {{{1363 dakota_sources = ./objects/DakotaPlugin.h\364 ./objects/DakotaPlugin.cpp\365 ./modules/InputUpdateFromDakotax/InputUpdateFromDakotax.h\366 ./modules/InputUpdateFromDakotax/InputUpdateFromDakotax.cpp\367 ./modules/DakotaResponsesx/DakotaResponsesx.h\368 ./modules/DakotaResponsesx/DakotaResponsesx.cpp\369 ./modules/InputUpdateFromVectorDakotax/InputUpdateFromVectorDakotax.h\370 ./modules/InputUpdateFromVectorDakotax/InputUpdateFromVectorDakotax.cpp\371 ./modules/InputUpdateFromMatrixDakotax/InputUpdateFromMatrixDakotax.h\372 ./modules/InputUpdateFromMatrixDakotax/InputUpdateFromMatrixDakotax.cpp\373 ./modules/AverageOntoPartitionx/AverageOntoPartitionx.cpp\374 ./modules/AverageOntoPartitionx/AverageOntoPartitionx.h\375 ./modules/Dakotax/Dakotax.h\376 ./modules/Dakotax/Dakotax.cpp\377 ./modules/Dakotax/DakotaMPI_Bcast.cpp\378 ./modules/Dakotax/DakotaFree.cpp\379 ./modules/Dakotax/SpawnCore.cpp\380 ./modules/Dakotax/DescriptorIndex.cpp\381 ./modules/AverageOntoPartitionx/AverageOntoPartitionx.cpp\382 ./modules/ModelProcessorx/Dakota/CreateParametersDakota.cpp\383 ./modules/AverageOntoPartitionx/AverageOntoPartitionx.h384 dakota_psources= ./modules/Dakotax/SpawnCoreParallel.cpp385 #}}}386 #Transient sources {{{1387 transient_sources = ./modules/ModelProcessorx/Transient/UpdateElementsTransient.cpp388 transient_psources = ./solutions/transient_core.cpp389 #}}}390 #Steadystate sources {{{1391 steadystate_psources = ./solutions/steadystate_core.cpp\392 ./solutions/steadystateconvergence.cpp393 #}}}394 #Prognostic sources {{{1395 prognostic_sources = ./modules/ModelProcessorx/Prognostic/UpdateElementsPrognostic.cpp\396 ./modules/ModelProcessorx/Prognostic/CreateNodesPrognostic.cpp\397 ./modules/ModelProcessorx/Prognostic/CreateConstraintsPrognostic.cpp\398 ./modules/ModelProcessorx/Prognostic/CreateLoadsPrognostic.cpp399 prognostic_psources = ./solutions/prognostic_core.cpp400 #}}}401 #Thermal sources {{{1402 thermal_sources = ./modules/ModelProcessorx/Thermal/UpdateElementsThermal.cpp\403 ./modules/ModelProcessorx/Thermal/CreateNodesThermal.cpp\404 ./modules/ModelProcessorx/Thermal/CreateConstraintsThermal.cpp\405 ./modules/ModelProcessorx/Thermal/CreateLoadsThermal.cpp\406 ./modules/ModelProcessorx/Enthalpy/UpdateElementsEnthalpy.cpp\407 ./modules/ModelProcessorx/Enthalpy/CreateNodesEnthalpy.cpp\408 ./modules/ModelProcessorx/Enthalpy/CreateConstraintsEnthalpy.cpp\409 ./modules/ModelProcessorx/Enthalpy/CreateLoadsEnthalpy.cpp\410 ./modules/ModelProcessorx/Melting/UpdateElementsMelting.cpp\411 ./modules/ModelProcessorx/Melting/CreateNodesMelting.cpp\412 ./modules/ModelProcessorx/Melting/CreateConstraintsMelting.cpp\413 ./modules/ModelProcessorx/Melting/CreateLoadsMelting.cpp\414 ./modules/ConstraintsStatex/ThermalConstraintsState.cpp\415 ./modules/ConstraintsStatex/ThermalIsPresent.cpp\416 ./modules/ResetConstraintsx/ThermalConstraintsReset.cpp417 418 thermal_psources = ./solutions/thermal_core.cpp\419 ./solutions/thermal_core_step.cpp\420 ./solutions/enthalpy_core.cpp\421 ./solutions/enthalpy_core_step.cpp\422 ./solvers/solver_thermal_nonlinear.cpp423 #}}}424 #Control sources {{{1425 control_sources= ./modules/ControlInputGetGradientx/ControlInputGetGradientx.cpp\426 ./modules/ControlInputGetGradientx/ControlInputGetGradientx.h\427 ./modules/ControlInputSetGradientx/ControlInputSetGradientx.cpp\428 ./modules/ControlInputSetGradientx/ControlInputSetGradientx.h\429 ./modules/ControlInputScaleGradientx/ControlInputScaleGradientx.cpp\430 ./modules/ControlInputScaleGradientx/ControlInputScaleGradientx.h\431 ./modules/GetVectorFromControlInputsx/GetVectorFromControlInputsx.cpp\432 ./modules/GetVectorFromControlInputsx/GetVectorFromControlInputsx.h\433 ./modules/SetControlInputsFromVectorx/SetControlInputsFromVectorx.cpp\434 ./modules/SetControlInputsFromVectorx/SetControlInputsFromVectorx.h\435 ./modules/ModelProcessorx/Control/CreateParametersControl.cpp\436 ./modules/ModelProcessorx/Control/UpdateElementsAndMaterialsControl.cpp\437 ./modules/InputControlUpdatex/InputControlUpdatex.h\438 ./modules/InputControlUpdatex/InputControlUpdatex.cpp\439 ./modules/SurfaceAbsVelMisfitx/SurfaceAbsVelMisfitx.h\440 ./modules/SurfaceAbsVelMisfitx/SurfaceAbsVelMisfitx.cpp\441 ./modules/SurfaceRelVelMisfitx/SurfaceRelVelMisfitx.h\442 ./modules/SurfaceRelVelMisfitx/SurfaceRelVelMisfitx.cpp\443 ./modules/SurfaceLogVelMisfitx/SurfaceLogVelMisfitx.h\444 ./modules/SurfaceLogVelMisfitx/SurfaceLogVelMisfitx.cpp\445 ./modules/SurfaceLogVxVyMisfitx/SurfaceLogVxVyMisfitx.h\446 ./modules/SurfaceLogVxVyMisfitx/SurfaceLogVxVyMisfitx.cpp\447 ./modules/SurfaceAverageVelMisfitx/SurfaceAverageVelMisfitx.h\448 ./modules/SurfaceAverageVelMisfitx/SurfaceAverageVelMisfitx.cpp\449 ./modules/ThicknessAbsMisfitx/ThicknessAbsMisfitx.h\450 ./modules/ThicknessAbsMisfitx/ThicknessAbsMisfitx.cpp\451 ./modules/CostFunctionx/CostFunctionx.h\452 ./modules/CostFunctionx/CostFunctionx.cpp\453 ./modules/Orthx/Orthx.h\454 ./modules/Orthx/Orthx.cpp\455 ./modules/Gradjx/Gradjx.h\456 ./modules/Gradjx/Gradjx.cpp\457 ./modules/DragCoefficientAbsGradientx/DragCoefficientAbsGradientx.cpp\458 ./modules/DragCoefficientAbsGradientx/DragCoefficientAbsGradientx.h\459 ./modules/ThicknessAbsGradientx/ThicknessAbsGradientx.cpp\460 ./modules/ThicknessAbsGradientx/ThicknessAbsGradientx.h\461 ./modules/RheologyBbarAbsGradientx/RheologyBbarAbsGradientx.cpp\462 ./modules/RheologyBbarAbsGradientx/RheologyBbarAbsGradientx.h\463 ./objects/Inputs/ControlInput.h\464 ./objects/Inputs/ControlInput.cpp\465 ./shared/Numerics/BrentSearch.cpp\466 ./shared/Numerics/OptimalSearch.cpp\467 ./shared/Numerics/OptFunc.cpp468 469 control_psources=./solutions/control_core.cpp\470 ./solutions/controltao_core.cpp\471 ./solutions/controlrestart.cpp\472 ./solutions/controlconvergence.cpp\473 ./solutions/objectivefunctionC.cpp\474 ./solutions/gradient_core.cpp\475 ./solutions/adjointdiagnostic_core.cpp\476 ./solutions/adjointbalancethickness_core.cpp\477 ./solutions/AdjointCorePointerFromSolutionEnum.cpp\478 ./solvers/solver_adjoint_linear.cpp479 480 #}}}481 #Hydrology sources {{{1482 hydrology_sources = ./modules/ModelProcessorx/Hydrology/UpdateElementsHydrology.cpp\483 ./modules/ModelProcessorx/Hydrology/CreateNodesHydrology.cpp\484 ./modules/ModelProcessorx/Hydrology/CreateConstraintsHydrology.cpp\485 ./modules/ModelProcessorx/Hydrology/CreateLoadsHydrology.cpp486 487 hydrology_psources = ./solutions/hydrology_core.cpp\488 ./solutions/hydrology_core_step.cpp489 #}}}490 #Diagnostic sources {{{1491 diagnostic_sources = ./modules/ModelProcessorx/DiagnosticHoriz/UpdateElementsDiagnosticHoriz.cpp\492 ./modules/ModelProcessorx/DiagnosticHoriz/CreateNodesDiagnosticHoriz.cpp \493 ./modules/ModelProcessorx/DiagnosticHoriz/CreateConstraintsDiagnosticHoriz.cpp \494 ./modules/ModelProcessorx/DiagnosticHoriz/CreateLoadsDiagnosticHoriz.cpp\495 ./modules/ModelProcessorx/DiagnosticVert/UpdateElementsDiagnosticVert.cpp\496 ./modules/ModelProcessorx/DiagnosticVert/CreateNodesDiagnosticVert.cpp \497 ./modules/ModelProcessorx/DiagnosticVert/CreateConstraintsDiagnosticVert.cpp \498 ./modules/ModelProcessorx/DiagnosticVert/CreateLoadsDiagnosticVert.cpp\499 ./modules/ModelProcessorx/DiagnosticHutter/UpdateElementsDiagnosticHutter.cpp\500 ./modules/ModelProcessorx/DiagnosticHutter/CreateNodesDiagnosticHutter.cpp \501 ./modules/ModelProcessorx/DiagnosticHutter/CreateConstraintsDiagnosticHutter.cpp \502 ./modules/ModelProcessorx/DiagnosticHutter/CreateLoadsDiagnosticHutter.cpp \503 ./shared/Elements/CoordinateSystemTransform.cpp\504 ./shared/Elements/TransformLoadVectorCoord.cpp \505 ./shared/Elements/TransformStiffnessMatrixCoord.cpp \506 ./shared/Elements/TransformInvStiffnessMatrixCoord.cpp \507 ./shared/Elements/TransformSolutionCoord.cpp508 diagnostic_psources =./solutions/diagnostic_core.cpp\509 ./solvers/solver_stokescoupling_nonlinear.cpp510 #}}}511 #Balanced sources {{{1512 balanced_sources = ./modules/ModelProcessorx/Balancethickness/UpdateElementsBalancethickness.cpp\513 ./modules/ModelProcessorx/Balancethickness/CreateNodesBalancethickness.cpp\514 ./modules/ModelProcessorx/Balancethickness/CreateConstraintsBalancethickness.cpp\515 ./modules/ModelProcessorx/Balancethickness/CreateLoadsBalancethickness.cpp516 balanced_psources = ./solutions/balancethickness_core.cpp517 #}}}518 #Responses sources {{{1519 responses_sources = ./modules/MinVelx/MinVelx.h\520 ./modules/MinVelx/MinVelx.cpp\521 ./modules/MaxVelx/MaxVelx.h\522 ./modules/MaxVelx/MaxVelx.cpp\523 ./modules/MaxAbsVxx/MaxAbsVxx.h\524 ./modules/MaxAbsVxx/MaxAbsVxx.cpp\525 ./modules/MaxAbsVyx/MaxAbsVyx.h\526 ./modules/MaxAbsVyx/MaxAbsVyx.cpp\527 ./modules/MaxAbsVzx/MaxAbsVzx.h\528 ./modules/MaxAbsVzx/MaxAbsVzx.cpp\529 ./modules/MaxVxx/MaxVxx.h\530 ./modules/MaxVxx/MaxVxx.cpp\531 ./modules/MaxVyx/MaxVyx.h\532 ./modules/MaxVyx/MaxVyx.cpp\533 ./modules/MaxVzx/MaxVzx.h\534 ./modules/MaxVzx/MaxVzx.cpp\535 ./modules/MinVxx/MinVxx.h\536 ./modules/MinVxx/MinVxx.cpp\537 ./modules/MinVyx/MinVyx.h\538 ./modules/MinVyx/MinVyx.cpp\539 ./modules/MinVzx/MinVzx.h\540 ./modules/MinVzx/MinVzx.cpp\541 ./modules/IceVolumex/IceVolumex.h\542 ./modules/IceVolumex/IceVolumex.cpp\543 ./modules/ElementResponsex/ElementResponsex.h\544 ./modules/ElementResponsex/ElementResponsex.cpp\545 ./modules/MassFluxx/MassFluxx.cpp\546 ./modules/MassFluxx/MassFluxx.h547 #}}}548 #Slope sources {{{1549 slope_sources = ./modules/ModelProcessorx/BedSlope/UpdateElementsBedSlope.cpp\550 ./modules/ModelProcessorx/BedSlope/CreateNodesBedSlope.cpp \551 ./modules/ModelProcessorx/BedSlope/CreateConstraintsBedSlope.cpp\552 ./modules/ModelProcessorx/BedSlope/CreateLoadsBedSlope.cpp\553 ./modules/ModelProcessorx/SurfaceSlope/UpdateElementsSurfaceSlope.cpp\554 ./modules/ModelProcessorx/SurfaceSlope/CreateNodesSurfaceSlope.cpp \555 ./modules/ModelProcessorx/SurfaceSlope/CreateConstraintsSurfaceSlope.cpp\556 ./modules/ModelProcessorx/SurfaceSlope/CreateLoadsSurfaceSlope.cpp557 slope_psources = ./solutions/surfaceslope_core.cpp\558 ./solutions/bedslope_core.cpp559 #}}}560 #Groundingline sources {{{1561 groundingline_sources= ./modules/GroundinglineMigrationx/GroundinglineMigrationx.cpp\562 ./modules/GroundinglineMigrationx/GroundinglineMigrationx.h563 #}}}564 #Rifts sources {{{1565 rifts_sources = ./objects/Loads/Riftfront.cpp\566 ./objects/Loads/Riftfront.h\567 ./modules/ConstraintsStatex/RiftConstraintsState.cpp568 #}}}569 #3D sources {{{1570 threed_sources = ./objects/Gauss/GaussPenta.h\571 ./objects/Gauss/GaussPenta.cpp\572 ./objects/ElementResults/PentaP1ElementResult.h\573 ./objects/ElementResults/PentaP1ElementResult.cpp\574 ./objects/Inputs/PentaP1Input.h\575 ./objects/Inputs/PentaP1Input.cpp\576 ./objects/Elements/Penta.h\577 ./objects/Elements/Penta.cpp\578 ./objects/Elements/PentaHook.h\579 ./objects/Elements/PentaHook.cpp\580 ./objects/Elements/PentaRef.h\581 ./objects/Elements/PentaRef.cpp582 #}}}583 #Bamg sources {{{1584 bamg_sources = ./objects/Bamg/BamgGeom.h\585 ./objects/Bamg/BamgGeom.cpp\586 ./objects/Bamg/BamgMesh.h\587 ./objects/Bamg/BamgMesh.cpp\588 ./objects/Bamg/BamgOpts.h\589 ./objects/Bamg/BamgOpts.cpp\590 ./objects/Bamg/CrackedEdge.h\591 ./objects/Bamg/CrackedEdge.cpp\592 ./objects/Bamg/Curve.h\593 ./objects/Bamg/Curve.cpp\594 ./objects/Bamg/Direction.h\595 ./objects/Bamg/Direction.cpp\596 ./objects/Bamg/DoubleAndInt.h\597 ./objects/Bamg/Edge.h\598 ./objects/Bamg/Edge.cpp\599 ./objects/Bamg/GeomEdge.h\600 ./objects/Bamg/GeomEdge.cpp\601 ./objects/Bamg/GeomSubDomain.h\602 ./objects/Bamg/GeomSubDomain.cpp\603 ./objects/Bamg/GeomVertex.h\604 ./objects/Bamg/GeomVertex.cpp\605 ./objects/Bamg/Geometry.cpp\606 ./objects/Bamg/Geometry.h\607 ./objects/Bamg/ListofIntersectionTriangles.cpp\608 ./objects/Bamg/ListofIntersectionTriangles.h\609 ./objects/Bamg/EigenMetric.cpp\610 ./objects/Bamg/Metric.cpp\611 ./objects/Bamg/Metric.h\612 ./objects/Bamg/QuadTree.cpp\613 ./objects/Bamg/QuadTree.h\614 ./objects/Bamg/R2.h\615 ./objects/Bamg/SetOfE4.cpp\616 ./objects/Bamg/SetOfE4.h\617 ./objects/Bamg/SubDomain.h\618 ./objects/Bamg/SubDomain.cpp\619 ./objects/Bamg/AdjacentTriangle.h\620 ./objects/Bamg/AdjacentTriangle.cpp\621 ./objects/Bamg/Triangle.cpp\622 ./objects/Bamg/Triangle.h\623 ./objects/Bamg/BamgVertex.cpp\624 ./objects/Bamg/BamgVertex.h\625 ./objects/Bamg/VertexOnEdge.h\626 ./objects/Bamg/VertexOnEdge.cpp\627 ./objects/Bamg/VertexOnGeom.h\628 ./objects/Bamg/VertexOnGeom.cpp\629 ./objects/Bamg/VertexOnVertex.h\630 ./objects/Bamg/VertexOnVertex.cpp\631 ./objects/Bamg/Mesh.cpp\632 ./objects/Bamg/Mesh.h\633 ./shared/Bamg/Abs.h \634 ./shared/Bamg/BigPrimeNumber.h\635 ./shared/Bamg/BigPrimeNumber.cpp\636 ./shared/Bamg/BinaryRand.h \637 ./shared/Bamg/det.h \638 ./shared/Bamg/Exchange.h \639 ./shared/Bamg/extrema.h \640 ./shared/Bamg/HeapSort.h \641 ./shared/Bamg/OppositeAngle.h \642 ./modules/Bamgx/Bamgx.cpp\643 ./modules/Bamgx/Bamgx.h\644 ./modules/BamgConvertMeshx/BamgConvertMeshx.cpp\645 ./modules/BamgConvertMeshx/BamgConvertMeshx.h\646 ./modules/BamgTriangulatex/BamgTriangulatex.cpp\647 ./modules/BamgTriangulatex/BamgTriangulatex.h648 #}}}649 #Kml sources {{{1650 kml_sources = ./modules/Exp2Kmlx/Exp2Kmlx.h\651 ./modules/Exp2Kmlx/Exp2Kmlx.cpp\652 ./modules/Kml2Expx/Kml2Expx.h\653 ./modules/Kml2Expx/Kml2Expx.cpp\654 ./modules/Shp2Kmlx/Shp2Kmlx.h\655 ./modules/Shp2Kmlx/Shp2Kmlx.cpp\656 ./modules/KMLFileReadx/KMLFileReadx.h\657 ./modules/KMLFileReadx/KMLFileReadx.cpp\658 ./modules/KMLMeshWritex/KMLMeshWritex.h\659 ./modules/KMLMeshWritex/KMLMeshWritex.cpp\660 ./modules/KMLOverlayx/KMLOverlayx.h\661 ./modules/KMLOverlayx/KMLOverlayx.cpp\662 ./objects/KML/KML_Attribute.cpp\663 ./objects/KML/KML_Attribute.h\664 ./objects/KML/KML_Comment.cpp\665 ./objects/KML/KML_Comment.h\666 ./objects/KML/KML_ColorStyle.cpp\667 ./objects/KML/KML_ColorStyle.h\668 ./objects/KML/KML_Container.cpp\669 ./objects/KML/KML_Container.h\670 ./objects/KML/KML_Document.cpp\671 ./objects/KML/KML_Document.h\672 ./objects/KML/KML_Feature.cpp\673 ./objects/KML/KML_Feature.h\674 ./objects/KML/KML_File.cpp\675 ./objects/KML/KML_File.h\676 ./objects/KML/KML_Folder.cpp\677 ./objects/KML/KML_Folder.h\678 ./objects/KML/KML_Geometry.cpp\679 ./objects/KML/KML_Geometry.h\680 ./objects/KML/KML_GroundOverlay.cpp\681 ./objects/KML/KML_GroundOverlay.h\682 ./objects/KML/KML_Icon.cpp\683 ./objects/KML/KML_Icon.h\684 ./objects/KML/KML_LatLonBox.cpp\685 ./objects/KML/KML_LatLonBox.h\686 ./objects/KML/KML_LinearRing.cpp\687 ./objects/KML/KML_LinearRing.h\688 ./objects/KML/KML_LineString.cpp\689 ./objects/KML/KML_LineString.h\690 ./objects/KML/KML_LineStyle.cpp\691 ./objects/KML/KML_LineStyle.h\692 ./objects/KML/KML_MultiGeometry.cpp\693 ./objects/KML/KML_MultiGeometry.h\694 ./objects/KML/KML_Object.cpp\695 ./objects/KML/KML_Object.h\696 ./objects/KML/KML_Overlay.cpp\697 ./objects/KML/KML_Overlay.h\698 ./objects/KML/KML_Point.cpp\699 ./objects/KML/KML_Point.h\700 ./objects/KML/KML_Placemark.cpp\701 ./objects/KML/KML_Placemark.h\702 ./objects/KML/KML_Polygon.cpp\703 ./objects/KML/KML_Polygon.h\704 ./objects/KML/KML_PolyStyle.cpp\705 ./objects/KML/KML_PolyStyle.h\706 ./objects/KML/KML_Style.cpp\707 ./objects/KML/KML_Style.h\708 ./objects/KML/KML_StyleSelector.cpp\709 ./objects/KML/KML_StyleSelector.h\710 ./objects/KML/KML_SubStyle.cpp\711 ./objects/KML/KML_SubStyle.h\712 ./objects/KML/KML_Unknown.cpp\713 ./objects/KML/KML_Unknown.h\714 ./objects/KML/KMLFileReadUtils.cpp\715 ./objects/KML/KMLFileReadUtils.h716 #}}}717 #Matlab sources {{{1718 matlab_sources= ./shared/Matlab/matlabshared.h\719 ./shared/Matlab/ModuleBoot.cpp\720 ./shared/Matlab/ModuleEnd.cpp\721 ./shared/Matlab/mxGetAssignedField.cpp\722 ./shared/Matlab/mxGetField.cpp\723 ./shared/Matlab/CheckNumMatlabArguments.cpp\724 ./toolkits/matlab/matlabincludes.h\725 ./toolkits/matlab/MatlabNArrayToNArray.cpp\726 ./io/Matlab/matlabio.h\727 ./io/Matlab/WriteMatlabData.cpp\728 ./io/Matlab/FetchMatlabData.cpp\729 ./io/Matlab/OptionParse.cpp730 #}}}731 #Serialsources {{{1732 serial_sources= ./objects/Options/Option.cpp\733 ./objects/Options/Option.h\734 ./objects/Options/OptionDouble.cpp\735 ./objects/Options/OptionDouble.h\736 ./objects/Options/OptionLogical.cpp\737 ./objects/Options/OptionLogical.h\738 ./objects/Options/OptionChar.cpp\739 ./objects/Options/OptionChar.h\740 ./objects/Options/OptionStruct.cpp\741 ./objects/Options/OptionStruct.h\742 ./objects/Options/OptionCell.cpp\743 ./objects/Options/OptionCell.h\744 ./objects/Options/OptionUtilities.cpp\745 ./objects/Options/OptionUtilities.h\746 ./shared/Threads/issm_threads.h\747 ./shared/Threads/LaunchThread.cpp\748 ./shared/Threads/PartitionRange.cpp\749 ./shared/Exp/exp.h\750 ./shared/Exp/IsInPoly.cpp\751 ./shared/Exp/IsInPolySerial.cpp\752 ./shared/Exp/DomainOutlineRead.cpp\753 ./shared/Exp/DomainOutlineWrite.cpp\754 ./shared/TriMesh/trimesh.h\755 ./shared/TriMesh/AssociateSegmentToElement.cpp\756 ./shared/TriMesh/GridInsideHole.cpp\757 ./shared/TriMesh/OrderSegments.cpp\758 ./shared/TriMesh/SplitMeshForRifts.cpp\759 ./shared/TriMesh/TriMeshUtils.cpp\760 ./modules/AddExternalResultx/AddExternalResultx.h\761 ./modules/AddExternalResultx/AddExternalResultx.cpp\762 ./modules/Chacox/Chacox.h\763 ./modules/Chacox/Chacox.cpp\764 ./modules/Chacox/input_parse.cpp\765 ./modules/Chacox/chaco_seconds.cpp\766 ./modules/Chacox/user_params.cpp\767 ./modules/Dakotax/SpawnCoreSerial.cpp\768 ./modules/TriaSearchx/TriaSearchx.h\769 ./modules/TriaSearchx/TriaSearchx.cpp\770 ./modules/PointCloudFindNeighborsx/PointCloudFindNeighborsx.h\771 ./modules/PointCloudFindNeighborsx/PointCloudFindNeighborsx.cpp\772 ./modules/PointCloudFindNeighborsx/PointCloudFindNeighborsxt.cpp\773 ./modules/Xy2llx/Xy2llx.h\774 ./modules/Xy2llx/Xy2llx.cpp\775 ./modules/Ll2xyx/Ll2xyx.h\776 ./modules/Ll2xyx/Ll2xyx.cpp\777 ./modules/InterpFromGridToMeshx/InterpFromGridToMeshx.cpp\778 ./modules/InterpFromGridToMeshx/InterpFromGridToMeshx.h\779 ./modules/InterpFromMesh2dx/InterpFromMesh2dx.cpp\780 ./modules/InterpFromMesh2dx/InterpFromMesh2dxt.cpp\781 ./modules/InterpFromMesh2dx/InterpFromMesh2dx.h\782 ./modules/InterpFromMeshToMesh2dx/InterpFromMeshToMesh2dx.cpp\783 ./modules/InterpFromMeshToMesh2dx/InterpFromMeshToMesh2dx.h\784 ./modules/InterpFromMeshToMesh3dx/InterpFromMeshToMesh3dx.cpp\785 ./modules/InterpFromMeshToMesh3dx/InterpFromMeshToMesh3dx.h\786 ./modules/InterpFromMeshToGridx/InterpFromMeshToGridx.cpp\787 ./modules/InterpFromMeshToGridx/InterpFromMeshToGridx.h\788 ./modules/HoleFillerx/HoleFillerx.cpp\789 ./modules/HoleFillerx/HoleFillerx.h\790 ./modules/AverageFilterx/AverageFilterx.cpp\791 ./modules/AverageFilterx/AverageFilterx.h\792 ./modules/MeshProfileIntersectionx/MeshProfileIntersectionx.cpp\793 ./modules/MeshProfileIntersectionx/MeshProfileIntersectionx.h\794 ./modules/MeshProfileIntersectionx/MeshSegmentsIntersection.cpp\795 ./modules/MeshProfileIntersectionx/ElementSegmentsIntersection.cpp\796 ./modules/MeshProfileIntersectionx/ElementSegment.cpp\797 ./modules/MeshProfileIntersectionx/SegmentIntersect.cpp\798 ./modules/MeshProfileIntersectionx/NodeInElement.cpp\799 ./modules/ContourToMeshx/ContourToMeshx.cpp\800 ./modules/ContourToMeshx/ContourToMeshxt.cpp\801 ./modules/ContourToMeshx/ContourToMeshx.h\802 ./modules/ContourToNodesx/ContourToNodesx.cpp\803 ./modules/ContourToNodesx/ContourToNodesx.h\804 ./modules/Reducevectorgtosx/Reducevectorgtosx.cpp\805 ./modules/Reducevectorgtosx/Reducevectorgtosx.h\806 ./modules/NodeConnectivityx/NodeConnectivityx.cpp\807 ./modules/NodeConnectivityx/NodeConnectivityx.h\808 ./modules/ElementConnectivityx/ElementConnectivityx.cpp\809 ./modules/ElementConnectivityx/ElementConnectivityx.h\810 ./modules/Scotchx/Scotchx.cpp\811 ./modules/Scotchx/Scotchx.h\812 ./modules/PropagateFlagsFromConnectivityx/PropagateFlagsFromConnectivityx.cpp\813 ./modules/PropagateFlagsFromConnectivityx/PropagateFlagsFromConnectivityx.h814 #}}}815 816 #ISSM sources are a combination of core sources and sources related to specific capabilities (which can817 #be activated by autotools conditionals818 #{{{1819 820 #First the core821 issm_sources = $(core_sources)822 issm_psources =823 824 #Now the optional source825 if DAKOTA826 issm_sources += $(dakota_sources)827 issm_psources += $(dakota_psources)828 endif829 830 if TRANSIENT831 issm_sources += $(transient_sources)832 issm_psources += $(transient_psources)833 endif834 835 if STEADYSTATE836 issm_sources += $(steadystate_sources)837 issm_psources += $(steadystate_psources)838 endif839 840 if PROGNOSTIC841 issm_sources += $(prognostic_sources)842 issm_psources += $(prognostic_psources)843 endif844 845 if THERMAL846 issm_sources += $(thermal_sources)847 issm_psources += $(thermal_psources)848 endif849 850 if CONTROL851 issm_sources += $(control_sources)852 issm_psources += $(control_psources)853 endif854 855 if HYDROLOGY856 issm_sources += $(hydrology_sources)857 issm_psources += $(hydrology_psources)858 endif859 860 if DIAGNOSTIC861 issm_sources += $(diagnostic_sources)862 issm_psources += $(diagnostic_psources)863 endif864 865 if BALANCED866 issm_sources += $(balanced_sources)867 issm_psources += $(balanced_psources)868 endif869 870 if RESPONSES871 issm_sources += $(responses_sources)872 endif873 874 if SLOPE875 issm_sources += $(slope_sources)876 issm_psources += $(slope_psources)877 endif878 879 if GROUNDINGLINE880 issm_sources += $(groundingline_sources)881 endif882 883 if RIFTS884 issm_sources += $(rifts_sources)885 endif886 887 if THREED888 issm_sources += $(threed_sources)889 endif890 #}}}891 892 #ISSM serial library {{{1893 libISSM_a_SOURCES = $(issm_sources)894 libISSM_a_SOURCES += $(serial_sources)895 libISSM_a_SOURCES += $(bamg_sources)896 libISSM_a_SOURCES += $(kml_sources)897 libISSM_a_SOURCES += $(matlab_sources)898 899 libISSM_a_CXXFLAGS = -fPIC -DMATLAB -D_SERIAL_ -D_GNU_SOURCE -fno-omit-frame-pointer -pthread -D_CPP_ $(CXXFLAGS) $(CXXOPTFLAGS)900 if LARGEARRAYS901 libISSM_a_CXXFLAGS += -D__GCC4BUILD__902 else903 libISSM_a_CXXFLAGS += -DMX_COMPAT_32904 endif905 #}}}906 #ISSM parallel library {{{1907 libpISSM_a_SOURCES = $(issm_sources)908 libpISSM_a_SOURCES += $(issm_psources)909 libpISSM_a_CXXFLAGS = -fPIC -D_PARALLEL_ -D_C_ $(CXXFLAGS) $(CXXOPTFLAGS)910 #}}}911 #Overload library, to overload any non-standard symbols. {{{1912 libOverload_a_SOURCES = ./shared/String/stricmp.c913 libOverload_a_CFLAGS = -fPIC -D_PARALLEL_ -D_C_ $(COPTFLAGS) $(CFLAGS)914 #}}}915 916 #Executable {{{1917 if NOPARALLEL918 bin_PROGRAMS =919 else920 bin_PROGRAMS = issm921 endif922 923 #Standard libraries924 LDADD = ./libpISSM.a ./libOverload.a925 926 #External packages927 LDADD += $(PETSCLIB) $(TAOLIB) $(FLIBS) $(PLAPACKLIB) $(MUMPSLIB) $(SCALAPACKLIB) $(BLACSLIB) $(HYPRELIB) $(MLLIB) $(DAKOTALIB) $(METISLIB) $(CHACOLIB) $(SCOTCHLIB) $(BLASLAPACKLIB) $(MKLLIB) $(MPILIB) $(MATHLIB) $(FORTRANLIB) $(GRAPHICSLIB) $(MULTITHREADINGLIB) $(OSLIBS)928 929 issm_SOURCES = solutions/issm.cpp930 issm_CXXFLAGS= -fPIC -D_PARALLEL_ $(CXXFLAGS) $(CXXOPTFLAGS) $(COPTFLAGS)931 #}}}932 933 #Automatic differentiation: append this fold to the end of the src/c/Makefile.am to get this Makefile.am {{{934 if ADIC2935 lib_LIBRARIES += libAD.a libpISSMRose.a936 937 #ADIC2 library, for automatic differentiation938 #libAD_a_SOURCES = ./mini1.ad.c939 libAD_a_SOURCES =940 libAD_a_CFLAGS = -fPIC -D_PARALLEL_ -D_C_ $(COPTFLAGS)941 942 943 944 #test rose preprocessing945 %.r2cpp.cpp : %.cpp946 testTranslator -rose:o $@ -rose:skipfinalCompileStep -DHAVE_CONFIG_H -D_PARALLEL_ -D_C_ -I. -I../.. $(INCLUDES) $<947 libpISSMRose_a_SOURCES = $(libpISSM_a_SOURCES:.cpp=.r2cpp.cpp)948 libpISSMRose_a_CXXFLAGS= -fPIC -D_PARALLEL_ -D_C_ $(CXXOPTFLAGS)949 950 951 952 #Automatic differentiation rules:953 %.ad.c: %.c954 adic2 -mforward $< --nary955 956 957 958 #Executable959 bin_PROGRAMS += issmRose.exe960 issmRose_exe_LDADD = ./libpISSMRose.a $(LDADD)961 issmRose_exe_SOURCES = solutions/issm.cpp962 issmRose_exe_CXXFLAGS= -fPIC -D_PARALLEL_ $(CXXOPTFLAGS) $(COPTFLAGS)963 LDADD += $(ADIC2LIB)964 965 endif #}}} -
proj/ice/larour/issm-uci-clean/trunk-jpl/src/ad/eraselinks.sh
1 #/bin/bash2 #This script soflinks all files in trunk/src/c/ directory necessary for compilation3 #of trunk/src/ad/4 rm include5 rm objects6 rm Container7 rm shared8 rm toolkits9 rm io10 rm EnumDefinitions11 rm modules12 rm solutions13 rm solvers14 rm issm.h -
proj/ice/larour/issm-uci-clean/trunk-jpl/src/Makefile.am
1 1 EXTRA_DIST = perl pro 2 2 SUBDIRS = c mex m 3 4 if ADIC25 SUBDIRS += ad6 endif7 8
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