source: issm/oecreview/Archive/11569-11580/ISSM-11571-11572.diff@ 11991

Index: /proj/ice/larour/issm-uci-clean/trunk-jpl/cron/nightlyrun.sh
===================================================================
--- /proj/ice/larour/issm-uci-clean/trunk-jpl/cron/nightlyrun.sh        (revision 11571)
+++ /proj/ice/larour/issm-uci-clean/trunk-jpl/cron/nightlyrun.sh        (revision 11572)
@@ -46,6 +46,7 @@
 done
 }
 #}}}
+
 #Get configuration
 #Source config file{{{1
 if [ $# -ne 1 ];
@@ -109,13 +110,13 @@
 #create simpler  cluster.rc file, with only the cluster we are interested in.
 cd $ISSM_TIER/test/NightlyRun/
 if [ "$MACHINE" = "win7" ]; then
-cat << END > $HOST_NAME"_settings.m"
+       cat << END > $HOST_NAME"_settings.m"
 cluster.login='$USER';
 cluster.codepath='`cygpath -m $ISSM_TIER/bin`';
 cluster.executionpath='`cygpath -m $EXECUTION_PATH`';
 END
 else
-cat << END > $HOST_NAME"_settings.m"
+       cat << END > $HOST_NAME"_settings.m"
 cluster.login='$USER';
 cluster.codepath='$ISSM_TIER/bin';
 cluster.executionpath='$EXECUTION_PATH';
@@ -138,14 +139,12 @@
        do
                package=`echo $EXTERNALPACKAGES | cut -d " " -f $i-$i`
                package_config=`echo $EXTERNALPACKAGES_CONFIGS | cut -d " " -f $i-$i`
-               package_numcpus=`echo $EXTERNALPACKAGES_NUMCPUS | cut -d " " -f $i-$i`
 
                cd $package
-               $package_config $package_numcpus
+               $package_config
                cd ..
        done
 
-
 elif [ "$ISSM_EXTERNALPACKAGES" == "copy" ]
 then
 
@@ -177,10 +176,8 @@
        make distclean
        ./scripts/automakererun.sh
        source ./configs/$COMPILE_CONFIG_FILE
+       make install
 
-       make -j $NUMCPUS_INSTALL
-       make -j $NUMCPUS_INSTALL install
-
 elif [ "$ISSM_COMPILATION" == "no" ]
 then
        echo "Skipping ISSM compilation"
@@ -193,11 +190,8 @@
 #Prepare run
 #create softlink to startup {{{1
 cd $ISSM_TIER/test/NightlyRun/
-if [ "$MACHINE" = "win7" ]; then
-       cp $ISSM_TIER/startup.m .
-else
-       ln -s $ISSM_TIER/startup.m .
-fi
+rm startup.m #in case it alreade exists
+cp $ISSM_TIER/startup.m .
 #}}}
 #Create nightlylog directory and info.log {{{1
 #put installation elapsed time in info.log
@@ -230,7 +224,6 @@
 else 
        MATLAB_TIER=$ISSM_TIER
 fi
-
 #}}}
 #Launch all tests on different cpus {{{1
 for (( i=1;i<=$NUMCPUS_RUN;i++ ))
@@ -280,7 +273,7 @@
 #}}}
 #concatenate all reports {{{1
 cd $ISSM_TIER/nightlylog/
-mv matlab_log1.log  matlab_log.log
+cp matlab_log1.log  matlab_log.log
 for (( i=2;i<=$NUMCPUS_RUN;i++ ))
 do
        cat matlab_log.log matlab_log$i.log > matlab_log.log.bak