| 1 | /*!\file: NewMat.cpp
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| 2 | * \brief create matrix using the Petsc library
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| 3 | */
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| 4 |
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| 5 | #ifdef HAVE_CONFIG_H
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| 6 | #include <config.h>
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| 7 | #else
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| 8 | #error "Cannot compile with HAVE_CONFIG_H symbol! run configure first!"
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| 9 | #endif
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| 10 |
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| 11 | /*Petsc includes: */
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| 12 | #include "petscmat.h"
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| 13 | #include "petscvec.h"
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| 14 | #include "petscksp.h"
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| 15 |
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| 16 | #include "./petscpatches.h"
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| 17 |
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| 18 | #include "../../../shared/shared.h"
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| 19 | #include "../../../include/include.h"
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| 20 |
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| 21 | /*NewMat(int M,int N){{{1*/
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| 22 | Mat NewMat(int M,int N){
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| 23 |
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| 24 | /*output:*/
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| 25 | Mat outmatrix=NULL;
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| 26 |
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| 27 | /*parameters: */
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| 28 | double sparsity=.001; //default
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| 29 | int m,n;
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| 30 | int d_nz,o_nz,nnz;
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| 31 |
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| 32 | /*Determine local sizes: */
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| 33 | m=PetscDetermineLocalSize(M);
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| 34 | n=PetscDetermineLocalSize(N);
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| 35 |
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| 36 | nnz=(int)((double)M*(double)N*sparsity); //number of non zeros.
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| 37 | d_nz=(int)((double)nnz/(double)M/2.0); //number of non zeros per row/2
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| 38 | o_nz=(int)((double)nnz/(double)M/2.0); //number of non zeros per row/2
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| 39 |
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| 40 | MatCreateMPIAIJ(MPI_COMM_WORLD,m,n,M,N,d_nz,NULL,o_nz,NULL,&outmatrix);
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| 41 |
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| 42 | return outmatrix;
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| 43 | }
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| 44 | /*}}}*/
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| 45 | /*NewMat(int M,int N,double sparsity){{{1*/
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| 46 | Mat NewMat(int M,int N,double sparsity){
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| 47 |
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| 48 | /*output:*/
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| 49 | Mat outmatrix=NULL;
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| 50 |
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| 51 | /*parameters: */
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| 52 | int m,n;
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| 53 | int d_nz,o_nz;
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| 54 | int nnz;
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| 55 |
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| 56 | /*Determine local sizes: */
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| 57 | m=PetscDetermineLocalSize(M);
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| 58 | n=PetscDetermineLocalSize(N);
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| 59 |
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| 60 | nnz=(int)((double)M*(double)N*sparsity); //number of non zeros.
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| 61 | d_nz=(int)((double)nnz/(double)M/2.0); //number of non zeros per row/2
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| 62 | o_nz=(int)((double)nnz/(double)M/2.0); //number of non zeros per row/2
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| 63 |
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| 64 | MatCreateMPIAIJ(MPI_COMM_WORLD,m,n,M,N,d_nz,NULL,o_nz,NULL,&outmatrix);
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| 65 |
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| 66 | return outmatrix;
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| 67 | }
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| 68 | /*}}}*/
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| 69 | /*NewMat(int M,int N,int connectivity,int numberofdofspernode){{{1*/
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| 70 | Mat NewMat(int M,int N,int connectivity,int numberofdofspernode){
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| 71 |
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| 72 | /*output:*/
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| 73 | Mat outmatrix=NULL;
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| 74 |
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| 75 | /*parameters: */
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| 76 | int m,n;
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| 77 | int d_nz,o_nz;
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| 78 | int nnz;
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| 79 |
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| 80 | #if _PETSC_MAJOR_ >= 3
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| 81 | const MatType type;
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| 82 | #else
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| 83 | MatType type;
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| 84 | #endif
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| 85 |
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| 86 | /*Determine local sizes: */
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| 87 | m=PetscDetermineLocalSize(M);
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| 88 | n=PetscDetermineLocalSize(N);
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| 89 |
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| 90 | /*Figure out number of non zeros per row: */
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| 91 | d_nz=(int)connectivity*numberofdofspernode/2;
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| 92 | o_nz=(int)connectivity*numberofdofspernode/2;
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| 93 |
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| 94 | MatCreate(MPI_COMM_WORLD,&outmatrix);
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| 95 | MatSetSizes(outmatrix,m,n,M,N);
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| 96 | MatSetFromOptions(outmatrix);
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| 97 |
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| 98 | /*preallocation according to type: */
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| 99 | MatGetType(outmatrix,&type);
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| 100 |
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| 101 | #if _PETSC_MAJOR_ == 2
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| 102 | if((strcmp(type,"mpiaij")==0) || (strcmp(type,"aijmumps")==0)){
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| 103 | MatMPIAIJSetPreallocation(outmatrix,d_nz,NULL,o_nz,NULL);
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| 104 | }
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| 105 | #else
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| 106 | if((strcmp(type,"mpiaij")==0) || (strcmp(type,"mpidense")==0)){
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| 107 | MatMPIAIJSetPreallocation(outmatrix,d_nz,NULL,o_nz,NULL);
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| 108 | }
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| 109 | #endif
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| 110 |
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| 111 | return outmatrix;
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| 112 | }
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| 113 | /*}}}*/
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