Matlab does not recognize any ISSM command

rae1994418

When I open matlab and initialize a model I get the following error message:

>> md=model;

??? Undefined function or variable 'model'

Then I go to this page http://issm.jpl.nasa.gov/documentation/addpath/. And I tried:

>> addpath c:\JPL-UCI\ISSM\bin

>> addpath C:\JPL-UCI\ISSM\lib

>> md

Undefined function or variable 'md'.

>> issmversion

Undefined function or variable 'issmversion'.

I added the path and It worked. But I still got error message for "md=model" or "issmversion"

mathieumorlighem

Hi,

from matlab, can you do:

ls C:\JPL-UCI\ISSM\lib

ls C:\JPL-UCI\ISSM\bin

and tell us what you get?

Thanks

Mathieu

rae1994418

Thanks for replying so quickly. This is what I get:

>> ls C:\JPL-UCI\ISSM\lib

. KMLOverlay.mexw64

.. Kml2Exp.la

BamgConvertMesh.la Kml2Exp.lib

BamgConvertMesh.lib Kml2Exp.mexw64

BamgConvertMesh.mexw64 Ll2xy.la

BamgMesher.la Ll2xy.lib

BamgMesher.lib Ll2xy.mexw64

BamgMesher.mexw64 M1qn3.la

BamgTriangulate.la M1qn3.lib

BamgTriangulate.lib M1qn3.mexw64

BamgTriangulate.mexw64 MeshPartition.la

Chaco.la MeshPartition.lib

Chaco.lib MeshPartition.mexw64

Chaco.mexw64 MeshProfileIntersection.la

ContourToMesh.la MeshProfileIntersection.lib

ContourToMesh.lib MeshProfileIntersection.mexw64

ContourToMesh.mexw64 NodeConnectivity.la

ContourToNodes.la NodeConnectivity.lib

ContourToNodes.lib NodeConnectivity.mexw64

ContourToNodes.mexw64 PointCloudFindNeighbors.la

ElementConnectivity.la PointCloudFindNeighbors.lib

ElementConnectivity.lib PointCloudFindNeighbors.mexw64

ElementConnectivity.mexw64 PropagateFlagsFromConnectivity.la

EnumToString.la PropagateFlagsFromConnectivity.lib

EnumToString.lib PropagateFlagsFromConnectivity.mexw64

EnumToString.mexw64 Scotch.la

Exp2Kml.la Scotch.lib

Exp2Kml.lib Scotch.mexw64

Exp2Kml.mexw64 Shp2Kml.la

ExpSimplify.la Shp2Kml.lib

ExpSimplify.lib Shp2Kml.mexw64

ExpSimplify.mexw64 ShpRead.la

ExpToLevelSet.la ShpRead.lib

ExpToLevelSet.lib ShpRead.mexw64

ExpToLevelSet.mexw64 StringToEnum.la

InterpFromGridToMesh.la StringToEnum.lib

InterpFromGridToMesh.lib StringToEnum.mexw64

InterpFromGridToMesh.mexw64 TriMesh.la

InterpFromMesh2d.la TriMesh.lib

InterpFromMesh2d.lib TriMesh.mexw64

InterpFromMesh2d.mexw64 TriMeshProcessRifts.la

InterpFromMeshToGrid.la TriMeshProcessRifts.lib

InterpFromMeshToGrid.lib TriMeshProcessRifts.mexw64

InterpFromMeshToGrid.mexw64 TriaSearch.la

InterpFromMeshToMesh2d.la TriaSearch.lib

InterpFromMeshToMesh2d.lib TriaSearch.mexw64

InterpFromMeshToMesh2d.mexw64 Xy2ll.la

InterpFromMeshToMesh3d.la Xy2ll.lib

InterpFromMeshToMesh3d.lib Xy2ll.mexw64

InterpFromMeshToMesh3d.mexw64 libISSMApi.la

IssmConfig.la libISSMApi.lib

IssmConfig.lib libISSMCore.la

IssmConfig.mexw64 libISSMCore.lib

KMLFileRead.la libISSMMatlab.la

KMLFileRead.lib libISSMMatlab.lib

KMLFileRead.mexw64 libISSMModules.la

KMLMeshWrite.la libISSMModules.lib

KMLMeshWrite.lib libISSMOverload.la

KMLMeshWrite.mexw64 libISSMOverload.lib

KMLOverlay.la

KMLOverlay.lib

>> ls C:\JPL-UCI\ISSM\bin

. .. README.rtf issm.exe

mathieumorlighem

OK so it seems like you have a "developer" version (i.e., matlab files are not moved to bin). It is fine, just do the following in matlab:

addpath C:\JPL-UCI\ISSM\src\m\dev

devpath;

That will add all ISSM matlab files to your PATH and you should be good to go

Best

Mathieu

rae1994418

So when I tried to addpath, matlab gave me this warning. And I checked that I really had no src folder inside C:\JPL-UCI\ISSM

>> addpath C:\JPL-UCI\ISSM\src\m\dev

Warning: Name is nonexistent or not a directory: C:\JPL-UCI\ISSM\src\m\dev

> In path (line 109)

In addpath (line 86)

>> devpath;

Undefined function or variable 'devpath'.

mathieumorlighem

So, what do you have in C:\JPL-UCI\ISSM\ ?

rae1994418

I have a bin folder, lib folder, matlabissm.bat, readme.rtf, and startup.m inside C:\JPL-UCI\ISSM\

Do I need to download external packages such as petsc, metis, cccl, and triangle?

The only things I downloaded right now are ISSM64.msi and matlab. And my operating system is Windows 8.

mathieumorlighem

You should send an email to Gilberto Perez about that. I don't understand why the package that you downloaded does not have the matlab files in bin...

sorry

Mathieu

rae1994418

Thank you so much. I will send an email to him.

rae1994418

Hi Mathieu,

Do you know the email address of Gilberto Perez? I couldn't find the email address on the website.

Thanks.

mathieumorlighem

He is at UCI: gilberp AT UCI dot EDU

rae1994418

Thank you!

rae1994418

Hello Mathieu,

I emailed Gilberto Perez but I didn't get any reply yet.

You said that the package ISSM64.msi I downloaded was missing matlab files. I tried to downloaded this package again but the matlab files were still missing, and I found that the package for mac was much bigger than the package for window.

Do you know where I can download all the matlab files? Maybe I can manually put them into the bin folder. Or are there any other package that I can download in order to install ISSM?

Thank you so much.

Rae

glperez

This is definitely an issue with the packager. The Matlab scripts are missing from the MSI.

I'm looking in to it.

-Gil

rae1994418

Thank you. Can I meet you at school? I was trying to compile and install ISSM, but I still couldn't make it work.

glperez

We can meet tomorrow, but I suggest you avoid trying to build on Windows. It is very difficult.

If you'd like you can stop by my office at 11am. My office is DBH 3221.

-Gil

rae1994418

Thank you so much for replying. I'm almost there but I still got some compile errors.

I couldn't go to your office at 11, but can I meet with you at 12 at your office?

Rae

glperez

Alright,

I just downloaded, installed and ran the nightlies using a freshly uploaded MSI. Looks like everything is working again!

-Gil