std::1::basic_string_common<true>::__throw_length_error(

larour

When compiling on MacOSX Yosemite, at link time for the matlab wrappers, I get the following error message:

"std::<true>:() const", referenced from:
      std::<char, std::<char>, std::<char> >:() const in BamgMesher.o
  "std:::(std:::&) const", referenced from:
      std::<char, std::<char> >& std::<char, std::<char> >(std::<char, std::<char> >&, char const*, unsigned long) in BamgMesher.o
  "std:::() const", referenced from:
      std::<char, std::<char> >& std::<char, std::<char> >(std::<char, std::<char> >&, char const*, unsigned long) in BamgMesher.o
  "std::<char, std::<char>, std::<char> >:(unsigned long, char)", referenced from:
      std::<char, std::<char> > std::<char, std::<char> >(std::<char, std::<char> >, char const*, char const*, char const*, std::&, char) in BamgMesher.o
  "std::<char, std::<char>, std::<char> >:(unsigned long, char)", referenced from:
      std::<char, std::<char>, std::<char> >:(std::<char, std::<char>, std::<char> > const&) in BamgMesher.o
      std::<char, std::<char>, std::<char> >:(int) in BamgMesher.o
  "std::<char, std::<char>, std::<char> >:(char)", referenced from:
      std::<char, std::<char>, std::<char> >:(int) in BamgMesher.o
  "std::<char, std::<char>, std::<char> >::~basic_string()", referenced from:
      BamgMesherUsage() in BamgMesher.o
      std::<char, std::<char>, std::<char> >::~basic_ostringstream() in BamgMesher.o
      std::<char, std::<char> > std::<char, std::<char> >(std::<char, std::<char> >, char const*, char const*, char const*, std::&, char) in BamgMesher.o
      std::<char, std::<char>, std::<char> >::~basic_ostringstream() in BamgMesher.o
      non-virtual thunk to std::<char, std::<char>, std::<char> >::~basic_ostringstream() in BamgMesher.o
      non-virtual thunk to std::<char, std::<char>, std::<char> >::~basic_ostringstream() in BamgMesher.o
      std::<char, std::<char>, std::<char> >::~basic_stringbuf() in BamgMesher.o
      ...
  "std::<char, std::<char>, std::<char> >:=(std::<char, std::<char>, std::<char> > const&)", referenced from:
      std::<char, std::<char>, std::<char> >:(std::<char, std::<char>, std::<char> > const&) in BamgMesher.o
  "std::<char, std::<char> >::(std::<char, std::<char> >&)", referenced from:
      std::<char, std::<char> >& std::<char, std::<char> >(std::<char, std::<char> >&, char const*, unsigned long) in BamgMesher.o
  "std::<char, std::<char> >:::~sentry()", referenced from:
      std::<char, std::<char> >& std::<char, std::<char> >(std::<char, std::<char> >&, char const*, unsigned long) in BamgMesher.o
  "std::<char, std::<char> >::~basic_ostream()", referenced from:
      construction vtable for std::<char, std::<char> >-in-std::<char, std::<char>, std::<char> > in BamgMesher.o
  "std::<char, std::<char> >::~basic_ostream()", referenced from:
      construction vtable for std::<char, std::<char> >-in-std::<char, std::<char>, std::<char> > in BamgMesher.o
  "std::<char, std::<char> >::~basic_ostream()", referenced from:
      BamgMesherUsage() in BamgMesher.o
      std::<char, std::<char>, std::<char> >::~basic_ostringstream() in BamgMesher.o
      std::<char, std::<char>, std::<char> >::~basic_ostringstream() in BamgMesher.o
      non-virtual thunk to std::<char, std::<char>, std::<char> >::~basic_ostringstream() in BamgMesher.o
      non-virtual thunk to std::<char, std::<char>, std::<char> >::~basic_ostringstream() in BamgMesher.o
  "std::<char, std::<char> >:()", referenced from:
      vtable for std::<char, std::<char>, std::<char> > in BamgMesher.o
  "std::<char, std::<char> >:(std:: const&)", referenced from:
      vtable for std::<char, std::<char>, std::<char> > in BamgMesher.o
  "std::<char, std::<char> >:()", referenced from:
      vtable for std::<char, std::<char>, std::<char> > in BamgMesher.o
  "std::<char, std::<char> >:(char*, long)", referenced from:
      vtable for std::<char, std::<char>, std::<char> > in BamgMesher.o
  "std::<char, std::<char> >:(char*, long)", referenced from:
      vtable for std::<char, std::<char>, std::<char> > in BamgMesher.o
  "std::<char, std::<char> >:(char const*, long)", referenced from:
      vtable for std::<char, std::<char>, std::<char> > in BamgMesher.o
  "std::<char, std::<char> >:()", referenced from:
      vtable for std::<char, std::<char>, std::<char> > in BamgMesher.o
  "std::<char, std::<char> >:()", referenced from:
      BamgMesherUsage() in BamgMesher.o
  "std::<char, std::<char> >::~basic_streambuf()", referenced from:
      BamgMesherUsage() in BamgMesher.o
      std::<char, std::<char>, std::<char> >::~basic_ostringstream() in BamgMesher.o
      std::<char, std::<char>, std::<char> >::~basic_ostringstream() in BamgMesher.o
      non-virtual thunk to std::<char, std::<char>, std::<char> >::~basic_ostringstream() in BamgMesher.o
      non-virtual thunk to std::<char, std::<char>, std::<char> >::~basic_ostringstream() in BamgMesher.o
      std::<char, std::<char>, std::<char> >::~basic_stringbuf() in BamgMesher.o
      std::<char, std::<char>, std::<char> >::~basic_stringbuf() in BamgMesher.o
      ...
  "std::<char>:", referenced from:
      std::<char, std::<char> >& std::<char, std::<char> >(std::<char, std::<char> >&, char const*, unsigned long) in BamgMesher.o
  "std::::~locale()", referenced from:
      std::<char, std::<char> >& std::<char, std::<char> >(std::<char, std::<char> >&, char const*, unsigned long) in BamgMesher.o
  "std:::()", referenced from:
      std::<char, std::<char> >& std::<char, std::<char> >(std::<char, std::<char> >&, char const*, unsigned long) in BamgMesher.o
  "std:::(void*)", referenced from:
      BamgMesherUsage() in BamgMesher.o
  "std:::(unsigned int)", referenced from:
      std::<char, std::<char> >& std::<char, std::<char> >(std::<char, std::<char> >&, char const*, unsigned long) in BamgMesher.o
  "std::<char, std::<char> >::~basic_ios()", referenced from:
      BamgMesherUsage() in BamgMesher.o
      std::<char, std::<char>, std::<char> >::~basic_ostringstream() in BamgMesher.o
      std::<char, std::<char>, std::<char> >::~basic_ostringstream() in BamgMesher.o
      non-virtual thunk to std::<char, std::<char>, std::<char> >::~basic_ostringstream() in BamgMesher.o
      non-virtual thunk to std::<char, std::<char>, std::<char> >::~basic_ostringstream() in BamgMesher.o
  "typeinfo for std::<char, std::<char> >", referenced from:
      construction vtable for std::<char, std::<char> >-in-std::<char, std::<char>, std::<char> > in BamgMesher.o
      typeinfo for std::<char, std::<char>, std::<char> > in BamgMesher.o
  "typeinfo for std::<char, std::<char> >", referenced from: typeinfo for std::<char, std::<char>, std::<char> > in BamgMesher.o
  "non-virtual thunk to std::<char, std::<char> >::~basic_ostream()", referenced from:
      construction vtable for std::<char, std::<char> >-in-std::<char, std::<char>, std::<char> > in BamgMesher.o
  "non-virtual thunk to std::<char, std::<char> >::~basic_ostream()", referenced from:
      construction vtable for std::<char, std::<char> >-in-std::<char, std::<char>, std::<char> > in BamgMesher.o
ld: symbol(s) not found for architecture x86_64
clang: error: linker command failed with exit code 1 (use -v to see invocation)

larour

This is due to the new location of the SDK in MacOSX version 10.9 and more. Matlab needs to be aware of it.

It can also be due to the fact that Matlab is not registering the proper version of MacOSX it is compiling on. To fix this, edit the mexopt.sh file in the Matlab install directory:

trunk/externalpackages/matlab/install/bin/mexopts.sh

Look for the following:

#SDKROOT='/Developer/SDKs/MacOSX10.6.sdk'


            SDKROOT='/Applications/Xcode.app/Contents/Developer/Platforms/MacOSX.platform/Developer/SDKs/MacOSX10.10.sdk/'

MACOSX_DEPLOYMENT_TARGET='10.10'

Uncomment the old path, and set the new SDKROOT to the right location. Also, update your deployment target.

You then need to reconfigure ISSM (so that the new matlab settings can be picked up), and recompile.

Eric L.