undefined reference to `mxMalloc'

henningakesson

Hello,

I'm trying to compile ISSM on Linux. I have installed the external packages petsc 3.2, mpich 1.4, autotools, metis, triangle and matlab without problems.

For the compilation, following the instructions, copying config-linux64-astrid.sh into my ../issm/trunk folder and running ./configure.sh without problem.

When doing

$ make

I get the following warnings/errors, when in ../issm/trunk/src/wrappers/matlab

========================================================

make: Entering directory `/net/ukl-felles.uib.no/export/skdusers/gbskn/issm/trunk/src/wrappers'

Making all in matlab

make: Entering directory `/net/ukl-felles.uib.no/export/skdusers/gbskn/issm/trunk/src/wrappers/matlab'

CXXLD AverageFilter.la

*** Warning: Linking the shared library AverageFilter.la against the

*** static library ./libISSMMatlab.a is not portable!

*** Warning: Linking the shared library AverageFilter.la against the

*** static library ../../c/libISSMModules.a is not portable!

*** Warning: Linking the shared library AverageFilter.la against the

*** static library ../../c/libISSMCore.a is not portable!

========================================================================

followed by multiple lines of the type

====================================

./libISSMMatlab.a(libISSMMatlab_a-WriteMatlabData.o): In function `WriteData(mxArray_tag**, double*, int, int)':

/Data/skd/users/gbskn/issm/trunk/src/wrappers/matlab/./io/WriteMatlabData.cpp: undefined reference to `mxMalloc'

=====================================

An more extensive log can be viewed at https://www.dropbox.com/s/cciu6ypy0bmczpk/issm-makelog-wrappers-matlab.txt

Thanks for any advice on this issue.

Henning

mathieumorlighem

This issue was resolved offline through Skype. You can ignore the warnings, and the problem with mxMalloc was due to matlab that was not properly installed in externalpackages/matlab.