Hi all,
I encountered the following error executing make install. Does anyone have a clue?
There is a segmentation fault in the middle of the error messages pasted below.
Thanks a lot!
Sai
libtool: install: /usr/bin/install -c .libs/libISSMOverload.lai /public/home/xdsc0190/work/ISSM_src/ISSM_4.21_100p/install/lib/libISSMOverload.la
libtool: install: warning: relinking libISSMModules.la'
libtool: install: (cd /public/home/xdsc0190/work/ISSM_src/ISSM_4.21_100p/src/c; /bin/sh /public/home/xdsc0190/work/ISSM_src/ISSM_4.21_100p/libtool --silent --tag CXX --mode=relink icpc -g -O2 -Ofast -march=core-avx2 -g -O2 -avoid-version -Wl,-rpath=/public/software/compiler/devtoolset-8/root/usr/lib64 -Wl,-rpath=/public/software/compiler/devtoolset-8/root/usr/lib -o libISSMModules.la -rpath /public/home/xdsc0190/work/ISSM_src/ISSM_4.21_100p/install/lib ./shared/Threads/libISSMModules_la-LaunchThread.lo ./shared/Threads/libISSMModules_la-PartitionRange.lo ./shared/Exp/libISSMModules_la-exp.lo ./shared/Triangle/libISSMModules_la-AssociateSegmentToElement.lo ./shared/Triangle/libISSMModules_la-GridInsideHole.lo ./shared/Triangle/libISSMModules_la-OrderSegments.lo ./shared/Triangle/libISSMModules_la-SplitMeshForRifts.lo ./shared/Triangle/libISSMModules_la-TriangleUtils.lo ./modules/Trianglex/libISSMModules_la-Trianglex.lo ./modules/ProcessRiftsx/libISSMModules_la-ProcessRiftsx.lo ./modules/PointCloudFindNeighborsx/libISSMModules_la-PointCloudFindNeighborsx.lo ./modules/PointCloudFindNeighborsx/libISSMModules_la-PointCloudFindNeighborsxt.lo ./modules/InterpFromGridToMeshx/libISSMModules_la-InterpFromGridToMeshx.lo ./modules/InterpFromMesh2dx/libISSMModules_la-InterpFromMesh2dx.lo ./modules/InterpFromMesh2dx/libISSMModules_la-InterpFromMesh2dxt.lo ./modules/InterpFromMeshToMesh3dx/libISSMModules_la-InterpFromMeshToMesh3dx.lo ./modules/InterpFromMeshToGridx/libISSMModules_la-InterpFromMeshToGridx.lo ./modules/MeshProfileIntersectionx/libISSMModules_la-MeshProfileIntersectionx.lo ./modules/ContourToMeshx/libISSMModules_la-ContourToMeshx.lo ./modules/ContourToMeshx/libISSMModules_la-ContourToMeshxt.lo ./modules/ExpToLevelSetx/libISSMModules_la-ExpToLevelSetx.lo ./modules/ExpToLevelSetx/libISSMModules_la-ExpToLevelSetxt.lo ./modules/ContourToNodesx/libISSMModules_la-ContourToNodesx.lo ./modules/DistanceToMaskBoundaryx/libISSMModules_la-DistanceToMaskBoundaryx.lo ./modules/DistanceToMaskBoundaryx/libISSMModules_la-DistanceToMaskBoundaryxt.lo ./modules/NodeConnectivityx/libISSMModules_la-NodeConnectivityx.lo ./modules/ElementConnectivityx/libISSMModules_la-ElementConnectivityx.lo ./modules/PropagateFlagsFromConnectivityx/libISSMModules_la-PropagateFlagsFromConnectivityx.lo ./modules/Krigingx/libISSMModules_la-Krigingx.lo ./modules/Krigingx/libISSMModules_la-pKrigingx.lo ./libISSMCore.la -L/public/home/xdsc0190/work/ISSM_src/ISSM_4.21_100p/externalpackages/triangle/install/lib -ltriangle -L/public/home/xdsc0190/work/ISSM_src/ISSM_4.21_100p/externalpackages/petsc/install/lib -lflapack -lfblas )
/public/home/xdsc0190/work/ISSM_src/ISSM_4.21_100p/libtool: line 8979: 42275 Segmentation fault icpc -shared ./shared/Threads/.libs/libISSMModules_la-LaunchThread.o ./shared/Threads/.libs/libISSMModules_la-PartitionRange.o ./shared/Exp/.libs/libISSMModules_la-exp.o ./shared/Triangle/.libs/libISSMModules_la-AssociateSegmentToElement.o ./shared/Triangle/.libs/libISSMModules_la-GridInsideHole.o ./shared/Triangle/.libs/libISSMModules_la-OrderSegments.o ./shared/Triangle/.libs/libISSMModules_la-SplitMeshForRifts.o ./shared/Triangle/.libs/libISSMModules_la-TriangleUtils.o ./modules/Trianglex/.libs/libISSMModules_la-Trianglex.o ./modules/ProcessRiftsx/.libs/libISSMModules_la-ProcessRiftsx.o ./modules/PointCloudFindNeighborsx/.libs/libISSMModules_la-PointCloudFindNeighborsx.o ./modules/PointCloudFindNeighborsx/.libs/libISSMModules_la-PointCloudFindNeighborsxt.o ./modules/InterpFromGridToMeshx/.libs/libISSMModules_la-InterpFromGridToMeshx.o ./modules/InterpFromMesh2dx/.libs/libISSMModules_la-InterpFromMesh2dx.o ./modules/InterpFromMesh2dx/.libs/libISSMModules_la-InterpFromMesh2dxt.o ./modules/InterpFromMeshToMesh3dx/.libs/libISSMModules_la-InterpFromMeshToMesh3dx.o ./modules/InterpFromMeshToGridx/.libs/libISSMModules_la-InterpFromMeshToGridx.o ./modules/MeshProfileIntersectionx/.libs/libISSMModules_la-MeshProfileIntersectionx.o ./modules/ContourToMeshx/.libs/libISSMModules_la-ContourToMeshx.o ./modules/ContourToMeshx/.libs/libISSMModules_la-ContourToMeshxt.o ./modules/ExpToLevelSetx/.libs/libISSMModules_la-ExpToLevelSetx.o ./modules/ExpToLevelSetx/.libs/libISSMModules_la-ExpToLevelSetxt.o ./modules/ContourToNodesx/.libs/libISSMModules_la-ContourToNodesx.o ./modules/DistanceToMaskBoundaryx/.libs/libISSMModules_la-DistanceToMaskBoundaryx.o ./modules/DistanceToMaskBoundaryx/.libs/libISSMModules_la-DistanceToMaskBoundaryxt.o ./modules/NodeConnectivityx/.libs/libISSMModules_la-NodeConnectivityx.o ./modules/ElementConnectivityx/.libs/libISSMModules_la-ElementConnectivityx.o ./modules/PropagateFlagsFromConnectivityx/.libs/libISSMModules_la-PropagateFlagsFromConnectivityx.o ./modules/Krigingx/.libs/libISSMModules_la-Krigingx.o ./modules/Krigingx/.libs/libISSMModules_la-pKrigingx.o -Wl,-rpath,/public/home/xdsc0190/work/ISSM_src/ISSM_4.21_100p/install/lib -Wl,-rpath,/public/home/xdsc0190/work/ISSM_src/ISSM_4.21_100p/externalpackages/triangle/install/lib -L/public/home/xdsc0190/work/ISSM_src/ISSM_4.21_100p/install/lib -lISSMCore -L/public/home/xdsc0190/work/ISSM_src/ISSM_4.21_100p/externalpackages/semic/install/lib -L=/public/software/compiler/intel/intel-compiler-2019.4.243/mpi/intel64/lib -L/public/software/compiler/intel/intel-compiler-2019.4.243/mpi/intel64/lib/release -lpetsc -ldmumps -lcmumps -lmumps_common -lpord -lparmetis -lzmumps -lmkl_scalapack_lp64 -lmkl_intel_lp64 -lmkl_blacs_intelmpi_lp64 -lmetis -lsurface_physics -lutils -lmkl_scalapack_ilp64 -lmkl_cdft_core -lmkl_intel_ilp64 -lmkl_intel_thread -lmkl_core -lmkl_blacs_intelmpi_ilp64 -liomp5 -lifcore -lmpi -lmpicxx -lmpifort -lpthread -lrt -L/public/home/xdsc0190/work/ISSM_src/ISSM_4.21_100p/externalpackages/triangle/install/lib -ltriangle -L/public/home/xdsc0190/work/ISSM_src/ISSM_4.21_100p/externalpackages/petsc/install/lib -lflapack -lfblas -L/public/software/compiler/intel/intel-compiler-2019.4.243/mpi/intel64/libfabric/lib -L/public/software/compiler/intel/intel-compiler-2019.4.243//daal/../tbb/lib/intel64_lin/gcc4.8 -L/public/software/compiler/intel/intel-compiler-2019.4.243//daal/lib/intel64_lin -L/public/software/compiler/intel/intel-compiler-2019.4.243//tbb/lib/intel64/gcc4.8 -L/public/software/compiler/intel/intel-compiler-2019.4.243//mkl/lib/intel64_lin -L/public/software/compiler/intel/intel-compiler-2019.4.243//compiler/lib/intel64_lin -L/public/software/compiler/intel/intel-compiler-2019.4.243//ipp/lib/intel64 -L/public/software/compiler/intel/intel-compiler-2019.4.243/compiler/lib/intel64 -L/public/software/compiler/intel/intel-compiler-2019.4.243/mkl/lib/intel64 -L/public/software/compiler/intel/intel-compiler-2019.4.243/tbb/lib/intel64 -L/public/home/xdsc0190/work/ISSM_src/ISSM_4.21_100p/externalpackages/lapack/install/lib -L/public/software/compiler/intel/intel-compiler-2019.4.243/compiler/lib/intel64_lin -L/public/software/compiler/devtoolset-8/root/usr/bin/../lib/gcc/x86_64-redhat-linux/8/ -L/public/software/compiler/devtoolset-8/root/usr/bin/../lib/gcc/ -L/public/software/compiler/devtoolset-8/root/usr/bin/../lib/gcc/x86_64-redhat-linux/8/../../../../lib64 -L/public/software/compiler/devtoolset-8/root/usr/bin/../lib/gcc/x86_64-redhat-linux/8/../../../../lib64/ -L/lib/../lib64 -L/lib/../lib64/ -L/usr/lib/../lib64 -L/usr/lib/../lib64/ -L/public/home/xdsc0190/work/ISSM_src/ISSM_4.21_100p/externalpackages/petsc/install/lib/ -L/public/software/compiler/intel/intel-compiler-2019.4.243/mpi/intel64/libfabric/lib/ -L/public/software/compiler/intel/intel-compiler-2019.4.243//daal/lib/intel64_lin/ -L/public/software/compiler/intel/intel-compiler-2019.4.243//mkl/lib/intel64_lin/ -L/public/software/compiler/intel/intel-compiler-2019.4.243//compiler/lib/intel64_lin/ -L/public/software/compiler/intel/intel-compiler-2019.4.243//ipp/lib/intel64/ -L/public/software/compiler/intel/intel-compiler-2019.4.243/compiler/lib/intel64/ -L/public/software/compiler/intel/intel-compiler-2019.4.243/mkl/lib/intel64/ -L/public/software/compiler/intel/intel-compiler-2019.4.243/tbb/lib/intel64/ -L/public/home/xdsc0190/work/ISSM_src/ISSM_4.21_100p/externalpackages/lapack/install/lib/ -L/public/software/compiler/devtoolset-8/root/usr/bin/../lib/gcc/x86_64-redhat-linux/8/../../../ -L/lib64 -L/lib/ -L/usr/lib64 -L/usr/lib -limf -lirng -lm -lipgo -ldecimal -lcilkrts -lstdc++ -lintlc -lsvml -lgcc -lgcc_s -lirc_s -ldl -lc -O2 -Ofast -march=core-avx2 -O2 -Wl,-rpath=/public/software/compiler/devtoolset-8/root/usr/lib64 -Wl,-rpath=/public/software/compiler/devtoolset-8/root/usr/lib -Wl,-soname -Wl,libISSMModules.so -o .libs/libISSMModules.so
libtool: install: error: relinklibISSMModules.la' with the above command before installing it
make[3]: *** [Makefile:2853: install-libLTLIBRARIES] Error 1
make[3]: Leaving directory '/work1/xdsc0571/sub/xdsc0190/ISSM_src/ISSM_4.21_100p/src/c'
make[2]: *** [Makefile:9524: install-am] Error 2
make[2]: Leaving directory '/work1/xdsc0571/sub/xdsc0190/ISSM_src/ISSM_4.21_100p/src/c'
make[1]: *** [Makefile:468: install-recursive] Error 1
make[1]: Leaving directory '/work1/xdsc0571/sub/xdsc0190/ISSM_src/ISSM_4.21_100p/src'
make: *** [Makefile:590: install-recursive] Error 1
