Compiling ISSM on Ubuntu 16.04.5

justinquinn

iisola97 Hi Ignacio,
No worries: I'm happy to help and am sorry this process has been so frustrating for you.

You shouldn't need Let's Encrypt: that package is more for creating SSL certificates on the server side.

Can you try this: sudo update-ca-certificates?

iisola97

justinquinn I really appreciate your help. Thanks, Justin.
This is what I got:

$ sudo update-ca-certificates [sudo] password for ignacio: sudo: update-ca-certificates: command not found

justinquinn

iisola97 Okay, another thing occurred to me: I'm guessing that when you uninstalled the manually-installed version of OpenSSL, you removed /usr/local/ssl entirely? Regardless, let's try restoring missing files if possible with sudo apt-get update; sudo apt-get upgrade, then test wget/curl again. Let me know what happens.

iisola97

justinquinn There are still some files under /usr/local/ssl:
/usr/local/ssl$ ls -l total 44 drwxr-xr-x 2 root root 4096 Jun 26 11:03 certs -rw-r--r-- 1 root root 414 Jun 26 11:03 ct_log_list.cnf -rw-r--r-- 1 root root 414 Jun 26 11:03 ct_log_list.cnf.dist drwxr-xr-x 2 root root 4096 Jun 26 11:03 misc -rw-r--r-- 1 root root 10998 Jun 26 11:03 openssl.cnf -rw-r--r-- 1 root root 10998 Jun 26 11:03 openssl.cnf.dist drwxr-xr-x 2 root root 4096 Jun 26 11:03 private

I ran sudo apt-get update; sudo apt-get upgrade, and got a long list of commands being executed and at the end this:

Fetched 186 MB in 10s (17.2 MB/s) E: Failed to fetchhttps://repo.skype.com/deb/pool/main/s/skypeforlinux/skypeforlinux_8.47.0.59_amd64.deb`

E: Unable to fetch some archives, try running apt-get update or apt-get --fix-missing. ignacio@mangala:~$ wget https://www.openssl.org/source/openssl-1.1.1.tar.gz --2019-06-27 19:16:26-- https://www.openssl.org/source/openssl-1.1.1.tar.gz Resolving www.openssl.org (www.openssl.org)... 104.93.192.141, 2600:140a:0:399::c1e, 2600:140a:0:389::c1e Connecting to www.openssl.org (www.openssl.org)|104.93.192.141|:443... connected. ERROR: cannot verify www.openssl.org's certificate, issued by ‘CN=Let's Encrypt Authority X3,O=Let's Encrypt,C=US’: Unable to locally verify the issuer's authority. To connect to www.openssl.org insecurely, use--no-check-certificate'.`

justinquinn

iisola97 Okay, how about sudo apt-get install ca-certificates?

iisola97

justinquinn it worked!!!
Autotools installed perfectly. I will move onto the next external packages and let you know if I come up with any error.
Thanks a lot!!

justinquinn

Nice!!! Making progress 🙂 Yep, keep me posted.

iisola97

I am following the steps provided in $ISSM_DIR/jenkins/linux64_ross.
As I said, autotools ran perfectly. The next external package is cmake, and I got this:

Scanning dependencies of target cmlibarchive [ 45%] Building C object Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/archive_acl.c.o [ 46%] Building C object Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/archive_check_magic.c.o [ 46%] Building C object Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/archive_cmdline.c.o [ 46%] Building C object Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/archive_cryptor.c.o In file included from /home/ignacio/research/mars/ISSM_source/trunk/externalpackages/cmake/install/Utilities/cmlibarchive/libarchive/archive_cryptor.c:32:0: /home/ignacio/research/mars/ISSM_source/trunk/externalpackages/cmake/install/Utilities/cmlibarchive/libarchive/archive_cryptor_private.h:107:17: error: field ‘ctx’ has incomplete type EVP_CIPHER_CTX ctx; ^ Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/build.make:134: recipe for target 'Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/archive_cryptor.c.o' failed make[2]: *** [Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/archive_cryptor.c.o] Error 1 CMakeFiles/Makefile2:1728: recipe for target 'Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/all' failed make[1]: *** [Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/all] Error 2 Makefile:160: recipe for target 'all' failed make: *** [all] Error 2

justinquinn

iisola97 From what I can see, this is an issue with the latest currently available version of OpenSSL on apt. Let's try this: sudo apt-get remove openssl; sudo apt-get install openssl=1.0.2. If the installation fails, check apt-cache madison openssl to see what versions are available that are closest to 1.0.2, modify the second command and rerun it.

iisola97

justinquinn I did that and reran it, but I didn't have luck.
I'm pasting this just in case this has something to do with the error I pasted above:

-- Checking support for ARCHIVE_CRYPTO_MD5_LIBC -- Checking support for ARCHIVE_CRYPTO_MD5_LIBC -- not found -- Checking support for ARCHIVE_CRYPTO_RMD160_LIBC -- Checking support for ARCHIVE_CRYPTO_RMD160_LIBC -- not found -- Checking support for ARCHIVE_CRYPTO_SHA1_LIBC -- Checking support for ARCHIVE_CRYPTO_SHA1_LIBC -- not found -- Checking support for ARCHIVE_CRYPTO_SHA256_LIBC -- Checking support for ARCHIVE_CRYPTO_SHA256_LIBC -- not found -- Checking support for ARCHIVE_CRYPTO_SHA384_LIBC -- Checking support for ARCHIVE_CRYPTO_SHA384_LIBC -- not found -- Checking support for ARCHIVE_CRYPTO_SHA512_LIBC -- Checking support for ARCHIVE_CRYPTO_SHA512_LIBC -- not found -- Checking support for ARCHIVE_CRYPTO_SHA256_LIBC2 -- Checking support for ARCHIVE_CRYPTO_SHA256_LIBC2 -- not found -- Checking support for ARCHIVE_CRYPTO_SHA384_LIBC2 -- Checking support for ARCHIVE_CRYPTO_SHA384_LIBC2 -- not found -- Checking support for ARCHIVE_CRYPTO_SHA512_LIBC2 -- Checking support for ARCHIVE_CRYPTO_SHA512_LIBC2 -- not found -- Checking support for ARCHIVE_CRYPTO_SHA256_LIBC3 -- Checking support for ARCHIVE_CRYPTO_SHA256_LIBC3 -- not found -- Checking support for ARCHIVE_CRYPTO_SHA384_LIBC3 -- Checking support for ARCHIVE_CRYPTO_SHA384_LIBC3 -- not found -- Checking support for ARCHIVE_CRYPTO_SHA512_LIBC3 -- Checking support for ARCHIVE_CRYPTO_SHA512_LIBC3 -- not found -- Checking support for ARCHIVE_CRYPTO_MD5_LIBSYSTEM -- Checking support for ARCHIVE_CRYPTO_MD5_LIBSYSTEM -- not found -- Checking support for ARCHIVE_CRYPTO_SHA1_LIBSYSTEM -- Checking support for ARCHIVE_CRYPTO_SHA1_LIBSYSTEM -- not found -- Checking support for ARCHIVE_CRYPTO_SHA256_LIBSYSTEM -- Checking support for ARCHIVE_CRYPTO_SHA256_LIBSYSTEM -- not found -- Checking support for ARCHIVE_CRYPTO_SHA384_LIBSYSTEM -- Checking support for ARCHIVE_CRYPTO_SHA384_LIBSYSTEM -- not found -- Checking support for ARCHIVE_CRYPTO_SHA512_LIBSYSTEM -- Checking support for ARCHIVE_CRYPTO_SHA512_LIBSYSTEM -- not found -- Checking support for ARCHIVE_CRYPTO_MD5_OPENSSL -- Checking support for ARCHIVE_CRYPTO_MD5_OPENSSL -- not found -- Checking support for ARCHIVE_CRYPTO_RMD160_OPENSSL -- Checking support for ARCHIVE_CRYPTO_RMD160_OPENSSL -- not found -- Checking support for ARCHIVE_CRYPTO_SHA1_OPENSSL -- Checking support for ARCHIVE_CRYPTO_SHA1_OPENSSL -- not found -- Checking support for ARCHIVE_CRYPTO_SHA256_OPENSSL -- Checking support for ARCHIVE_CRYPTO_SHA256_OPENSSL -- not found -- Checking support for ARCHIVE_CRYPTO_SHA384_OPENSSL -- Checking support for ARCHIVE_CRYPTO_SHA384_OPENSSL -- not found -- Checking support for ARCHIVE_CRYPTO_SHA512_OPENSSL -- Checking support for ARCHIVE_CRYPTO_SHA512_OPENSSL -- not found -- Checking support for ARCHIVE_CRYPTO_MD5_LIBMD -- Checking support for ARCHIVE_CRYPTO_MD5_LIBMD -- not found -- Checking support for ARCHIVE_CRYPTO_RMD160_LIBMD -- Checking support for ARCHIVE_CRYPTO_RMD160_LIBMD -- not found -- Checking support for ARCHIVE_CRYPTO_SHA1_LIBMD -- Checking support for ARCHIVE_CRYPTO_SHA1_LIBMD -- not found -- Checking support for ARCHIVE_CRYPTO_SHA256_LIBMD -- Checking support for ARCHIVE_CRYPTO_SHA256_LIBMD -- not found -- Checking support for ARCHIVE_CRYPTO_SHA512_LIBMD -- Checking support for ARCHIVE_CRYPTO_SHA512_LIBMD -- not found

justinquinn

iisola97 Okay, looks like libarchive is missing. There are two things we can try...

sudo apt-get remove openssl; sudo apt-get install openssl-dev=1.0.2
— OR —
sudo apt-get install libarchive

If the first does not work, you can leave the development copy, and proceed with trying (2).

iisola97

justinquinn Some updates:

I couldn't install openssl-dev=1.0.2 and libarchive. Both errors were: E: Unable to locate package openssl-dev/libarchive.
I've installed openssl=1.0.2g-1ubuntu4.15. However, if I run openssl version in terminal, I get the following: OpenSSL 1.1.1 11 Sep 2018. Is this correct?

iisola97

I was able to install sudo apt-get install libarchive-dev but I still got the same error while installing cmake:

Scanning dependencies of target cmlibarchive [ 45%] Building C object Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/archive_acl.c.o [ 46%] Building C object Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/archive_check_magic.c.o [ 46%] Building C object Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/archive_cmdline.c.o [ 46%] Building C object Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/archive_cryptor.c.o In file included from /home/ignacio/research/mars/ISSM_source/trunk/externalpackages/cmake/install/Utilities/cmlibarchive/libarchive/archive_cryptor.c:32:0: /home/ignacio/research/mars/ISSM_source/trunk/externalpackages/cmake/install/Utilities/cmlibarchive/libarchive/archive_cryptor_private.h:107:17: error: field ‘ctx’ has incomplete type EVP_CIPHER_CTX ctx; ................^ Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/build.make:134: recipe for target 'Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/archive_cryptor.c.o' failed make[2]: *** [Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/archive_cryptor.c.o] Error 1 CMakeFiles/Makefile2:1728: recipe for target 'Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/all' failed make[1]: *** [Utilities/cmlibarchive/libarchive/CMakeFiles/cmlibarchive.dir/all] Error 2 Makefile:160: recipe for target 'all' failed make: *** [all] Error 2

justinquinn

iisola97 Yeah, we need to get the version of OpenSSL right. What does sudo apt-cache madison openssl yield? You’ll need to sudo apt-get remove openssl; sudo apt-get install openssl=VERSION, where VERSION is the version number closest to 1.0.2 that you can see when running sudo apt-cache madison openssl.

iisola97

ignacio@mangala:~$ sudo apt-cache madison openssl [sudo] password for ignacio: openssl | 1.0.2g-1ubuntu4.15 | http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 Packages openssl | 1.0.2g-1ubuntu4.15 | http://security.ubuntu.com/ubuntu xenial-security/main amd64 Packages openssl | 1.0.2g-1ubuntu4 | http://archive.ubuntu.com/ubuntu xenial/main amd64 Packages
I've tried installing both VERSION = 1.0.2g-1ubuntu4.15 and VERSION = 1.0.2g-1ubuntu4, and run cmake installation, but for both it gets stuck at the same instance with the same error.

justinquinn

iisola97 What do you get from running openssl -v now?

iisola97

justinquinn
ignacio@mangala:~$ openssl -v Invalid command '-v'; type "help" for a list.

ignacio@mangala:~$ dpkg -l openssl Desired=Unknown/Install/Remove/Purge/Hold | Status=Not/Inst/Conf-files/Unpacked/halF-conf/Half-inst/trig-aWait/Trig-pend |/ Err?=(none)/Reinst-required (Status,Err: uppercase=bad) ||/ Name Version Architecture Description +++-==============================================================-====================================-====================================-================================================================================================================================== ii openssl 1.0.2g-1ubuntu4.15 amd64 Secure Sockets Layer toolkit - cryptographic utility

ignacio@mangala:~$ openssl version OpenSSL 1.1.1 11 Sep 2018

justinquinn

iisola97 Oops: yep, openssl version. Okay, well it looks like, despite setting the version, you still have v1.1.1. What does which openssl give? cd to that directory, then ls -la openssl*. What do you get?

iisola97

justinquinn
ignacio@mangala:~$ which openssl /usr/local/bin/openssl ignacio@mangala:~$ cd /usr/local/bin/ ignacio@mangala:/usr/local/bin$ ls -la openssl* -rwxr-xr-x 1 root root 756792 Jun 26 11:03 openssl

justinquinn

iisola97 Interesting. So using the =<version> modifier did not work. I think maybe madison was the wrong repo as well. What do you get from apt-cache policy openssl? sudo apt-get remove openssl; sudo apt-get update; sudo apt-get autoremove then sudo apt-get install openssl=<version> with the version closest to 1.0.2 that you get from apt-cache policy openssl. This should work.

iisola97

justinquinn
ignacio@mangala:~$ apt-cache policy openssl openssl: Installed: 1.0.2g-1ubuntu4.15 Candidate: 1.0.2g-1ubuntu4.15 Version table: *** 1.0.2g-1ubuntu4.15 500 500 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 Packages 500 http://security.ubuntu.com/ubuntu xenial-security/main amd64 Packages 100 /var/lib/dpkg/status 1.0.2g-1ubuntu4 500 500 http://archive.ubuntu.com/ubuntu xenial/main amd64 Packages ignacio@mangala:~$ sudo apt-get remove openssl; sudo apt-get update; sudo apt-get autoremove [sudo] password for ignacio: Reading package lists... Done Building dependency tree Reading state information... Done The following packages will be REMOVED: ca-certificates openssl 0 upgraded, 0 newly installed, 2 to remove and 96 not upgraded. After this operation, 1,393 kB disk space will be freed. Do you want to continue? [Y/n] Y (Reading database ... 219196 files and directories currently installed.) Removing ca-certificates (20170717~16.04.2) ... Removing dangling symlinks from /etc/ssl/certs... done. Removing openssl (1.0.2g-1ubuntu4.15) ... Processing triggers for man-db (2.7.5-1) ... Hit:1 http://ppa.launchpad.net/maarten-baert/simplescreenrecorder/ubuntu xenial InRelease Hit:2 http://archive.ubuntu.com/ubuntu xenial InRelease Hit:3 http://archive.canonical.com/ubuntu xenial InRelease Get:4 http://security.ubuntu.com/ubuntu xenial-security InRelease [109 kB] Hit:5 https://repo.skype.com/deb stable InRelease Ign:6 http://dell.archive.canonical.com/updates xenial-dell-matira-5-7 InRelease Get:7 http://archive.ubuntu.com/ubuntu xenial-updates InRelease [109 kB] Ign:8 http://dell.archive.canonical.com/updates xenial-dell-service InRelease Ign:9 http://dell.archive.canonical.com/updates xenial-dell InRelease Hit:10 http://dell.archive.canonical.com/updates xenial-dell-matira-5-7 Release Hit:11 http://dell.archive.canonical.com/updates xenial-dell-service Release Get:12 http://archive.ubuntu.com/ubuntu xenial-backports InRelease [107 kB] Hit:13 http://dell.archive.canonical.com/updates xenial-dell Release Get:14 http://security.ubuntu.com/ubuntu xenial-security/main amd64 DEP-11 Metadata [73.8 kB] Get:16 http://security.ubuntu.com/ubuntu xenial-security/main DEP-11 64x64 Icons [73.2 kB] Get:17 http://security.ubuntu.com/ubuntu xenial-security/universe amd64 DEP-11 Metadata [121 kB] Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 DEP-11 Metadata [325 kB] Get:19 http://security.ubuntu.com/ubuntu xenial-security/universe DEP-11 64x64 Icons [179 kB] Get:21 http://security.ubuntu.com/ubuntu xenial-security/multiverse amd64 DEP-11 Metadata [2,464 B] Get:23 http://archive.ubuntu.com/ubuntu xenial-updates/main DEP-11 64x64 Icons [238 kB] Get:24 http://archive.ubuntu.com/ubuntu xenial-updates/universe amd64 DEP-11 Metadata [271 kB] Get:25 http://archive.ubuntu.com/ubuntu xenial-updates/universe DEP-11 64x64 Icons [398 kB] Get:26 http://archive.ubuntu.com/ubuntu xenial-updates/multiverse amd64 DEP-11 Metadata [5,976 B] Get:27 http://archive.ubuntu.com/ubuntu xenial-updates/multiverse DEP-11 64x64 Icons [14.3 kB] Get:28 http://archive.ubuntu.com/ubuntu xenial-backports/main amd64 DEP-11 Metadata [3,328 B] Get:29 http://archive.ubuntu.com/ubuntu xenial-backports/universe amd64 DEP-11 Metadata [5,104 B] Fetched 2,036 kB in 1s (1,249 kB/s) Reading package lists... Done Reading package lists... Done Building dependency tree Reading state information... Done 0 upgraded, 0 newly installed, 0 to remove and 96 not upgraded. ignacio@mangala:~$ sudo apt-get install openssl=1.0.2g-1ubuntu4.15 Reading package lists... Done Building dependency tree Reading state information... Done Suggested packages: ca-certificates The following NEW packages will be installed: openssl 0 upgraded, 1 newly installed, 0 to remove and 96 not upgraded. Need to get 0 B/492 kB of archives. After this operation, 956 kB of additional disk space will be used. Selecting previously unselected package openssl. (Reading database ... 218929 files and directories currently installed.) Preparing to unpack .../openssl_1.0.2g-1ubuntu4.15_amd64.deb ... Unpacking openssl (1.0.2g-1ubuntu4.15) ... Processing triggers for man-db (2.7.5-1) ... Setting up openssl (1.0.2g-1ubuntu4.15) ... ignacio@mangala:~$ sudo apt-get install ca-certificates Reading package lists... Done Building dependency tree Reading state information... Done The following NEW packages will be installed: ca-certificates 0 upgraded, 1 newly installed, 0 to remove and 96 not upgraded. Need to get 0 B/167 kB of archives. After this operation, 436 kB of additional disk space will be used. Preconfiguring packages ... Selecting previously unselected package ca-certificates. (Reading database ... 219021 files and directories currently installed.) Preparing to unpack .../ca-certificates_20170717~16.04.2_all.deb ... Unpacking ca-certificates (20170717~16.04.2) ... Processing triggers for man-db (2.7.5-1) ... Setting up ca-certificates (20170717~16.04.2) ... Processing triggers for ca-certificates (20170717~16.04.2) ... Updating certificates in /etc/ssl/certs... 148 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done.
But still:
ignacio@mangala:~$ openssl version OpenSSL 1.1.1 11 Sep 2018 ignacio@mangala:~$ dpkg -l openssl Desired=Unknown/Install/Remove/Purge/Hold | Status=Not/Inst/Conf-files/Unpacked/halF-conf/Half-inst/trig-aWait/Trig-pend |/ Err?=(none)/Reinst-required (Status,Err: uppercase=bad) ||/ Name Version Architecture Description +++-============================-===================-===================-============================================================= ii openssl 1.0.2g-1ubuntu4.15 amd64 Secure Sockets Layer toolkit - cryptographic utility
And cmake installation still gets stuck at same instance.

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