[issm-svn] r23932 - issm/trunk/packagers/ubuntu-dakota

[jdquinn at issm.ess.uci.edu]

Author: jdquinn
Date: 2019-05-23 20:49:23 -0700 (Thu, 23 May 2019)
New Revision: 23932

Added:
   issm/trunk/packagers/ubuntu-dakota/package.sh
Log:
CHG: Modified permissions and extended attributes

Added: issm/trunk/packagers/ubuntu-dakota/package.sh
===================================================================
--- issm/trunk/packagers/ubuntu-dakota/package.sh	                        (rev 0)
+++ issm/trunk/packagers/ubuntu-dakota/package.sh	2019-05-24 03:49:23 UTC (rev 23932)
@@ -0,0 +1,76 @@
+#!/bin/bash
+
+MATLAB_PATH="/usr/local/MATLAB/R2015a"
+PACKAGE="ISSM" # Name of directory to copy distributable files to
+TARBALL_NAME="issm-ubuntu-dakota"
+TARBALL=$TARBALL_NAME.tar.gz
+
+# Clean up from previous packaging
+echo "Cleaning up existing assets"
+cd $ISSM_DIR
+rm -rf $PACKAGE
+mkdir $PACKAGE
+
+# Add/modify required binaries
+cd $ISSM_DIR/bin
+
+echo "Modify generic"
+cat generic_static.m | sed -e "s/generic_static/generic/g" > generic.m
+
+echo "Moving mpiexec to bin"
+if [ -f ../externalpackages/mpich/install/bin/mpiexec ]; then
+	cp ../externalpackages/mpich/install/bin/mpiexec .
+	cp ../externalpackages/mpich/install/bin/hydra_pmi_proxy .
+else
+	echo "mpich not found"
+fi
+
+echo "Moving gmsh to bin"
+if [ -f ../externalpackages/gmsh/install/gmsh ]; then
+	cp ../externalpackages/gmsh/install/gmsh .
+else
+	echo "gmsh not found"
+fi
+
+# Check that test101 runs
+cd $ISSM_DIR/test/NightlyRun
+rm matlab.log
+$MATLAB_PATH/bin/matlab -nojvm -nosplash -r "try, addpath $ISSM_DIR/bin $ISSM_DIR/lib; runme('id',101);exit; catch me,fprintf('%s',getReport(me)); exit; end" -logfile matlab.log
+
+if [[ $(cat matlab.log | grep -c SUCCESS) -lt 10 ]]; then
+	echo "test101 FAILED"
+	exit 1;
+else
+	echo "test101 PASSED"
+fi
+
+echo "Creating tarball: ${TARBALL_NAME}"
+cd $ISSM_DIR
+rm -f $TARBALL
+cp -rf bin lib test examples scripts $PACKAGE/
+tar -czf $TARBALL $PACKAGE
+ls -lah $TARBALL
+
+echo "Shipping binaries to website"
+
+# We're using public key authentication method to upload the tarball The
+# following lines check to see if the SSH Agent is running. If not, then it is
+# started and relevant information is forwarded to a script.
+pgrep "ssh-agent" > /dev/null
+if [ $? -ne 0 ]; then
+	echo "SSH Agent is not running. Starting it..."
+	ssh-agent > ~/.ssh/agent.sh
+else
+	echo "SSH Agent is running..."
+fi
+
+source ~/.ssh/agent.sh
+ssh-add ~/.ssh/ubuntu-bins_jenkins-to-ross
+
+scp $TARBALL ross.ics.uci.edu:/var/www/html/$TARBALL
+
+if [ $? -ne 0 ]; then
+	echo "The upload failed."
+	echo "Perhaps the SSH Agent was started by some other means."
+	echo "Try killing the agent and running again."
+fi