[issm-support] ISSM compilation issues

[Jake Walter]

Dear ISSM Support,

I am having trouble with the software on my Linux machine.  I am using a 64
bit installation for all the external packages and the install looks fine.
 However, it crashes frequently in Matlab when running the example model,
with an error message related to PETSC, an example is below.  Is there a
more stable version that I should be using?  I have tried both versions 3.1
and 3.2 of PETSc and running Matlab 2012a.

Thanks so much for your help ahead of time.

Jake Walter


[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Caught signal number 11 SEGV: Segmentation Violation,
probably memory access out of range
[0]PETSC ERROR: Try option -start_in_debugger or -on_error_attach_debugger
[0]PETSC ERROR: or see
http://www.mcs.anl.gov/petsc/petsc-as/documentation/troubleshooting.html#Signal[0]PETSCERROR:
or try
http://valgrind.org on GNU/linux and Apple Mac OS X to find memory
corruption errors
[0]PETSC ERROR: configure using --with-debugging=yes, recompile, link, and
run
[0]PETSC ERROR: to get more information on the crash.
[0]PETSC ERROR: --------------------- Error Message
------------------------------------
[0]PETSC ERROR: Signal received!
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Petsc Release Version 3.1.0, Patch 7, Mon Dec 20 14:26:37
CST 2010
[0]PETSC ERROR: See docs/changes/index.html for recent updates.
[0]PETSC ERROR: See docs/faq.html for hints about trouble shooting.
[0]PETSC ERROR: See docs/index.html for manual pages.
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: Unknown Name on a linux-gnu named love by jwalter Fri Apr
 6 14:13:59 2012
[0]PETSC ERROR: Libraries linked from
/soft/issm/issm/trunk/externalpackages/petsc/install/lib
[0]PETSC ERROR: Configure run at Thu Apr  5 14:20:09 2012
[0]PETSC ERROR: Configure options
--prefix=/soft/issm/issm/trunk/externalpackages/petsc/install
--with-mpi-dir=/soft/issm/issm/trunk/externalpackages/mpich2/install
--PETSC_ARCH=linux-gnu-amd64
--PETSC_DIR=/soft/issm/issm/trunk/externalpackages/petsc/src
--with-debugging=0 --with-shared=0 --download-mumps=yes
--download-scalapack=yes --download-blacs=yes --download-blas=yes
--download-f-blas-lapack=yes --download-parmetis=yes
--FFLAGS=-I/soft/issm/issm/trunk/externalpackages/mpich2/install/include
--download-plapack=yes --COPTFLAGS="-march=opteron -O2"
--FOPTFLAGS="-march=opteron -O2" --CXXOPTFLAGS="-march=opteron -O2"
--with-pic=1
[0]PETSC ERROR:
------------------------------------------------------------------------
[0]PETSC ERROR: User provided function() line 0 in unknown directory
unknown file
application called MPI_Abort(MPI_COMM_WORLD, 59) - process 0


-- 
Jacob Walter
PhD Candidate
Dept. of Earth and Planetary Sciences
University of California, Santa Cruz
jwalter at ucsc.edu
http://es.ucsc.edu/~jwalter
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